Wall clock time and date at job start Mon Mar 30 2020 01:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47429 * 2 1 4 4 N 1.46503 * 109.47215 * 239.99809 * 2 1 3 5 5 C 1.34773 * 120.00059 * 84.99931 * 4 2 1 6 6 N 1.34773 * 120.00448 * 179.97438 * 5 4 2 7 7 O 1.21591 * 119.99723 * 0.02562 * 5 4 2 8 8 C 1.50699 * 109.46909 * 120.00096 * 2 1 3 9 9 O 1.21288 * 120.00098 * 120.00002 * 8 2 1 10 10 N 1.34775 * 120.00209 * 299.99664 * 8 2 1 11 11 C 1.46496 * 120.00509 * 180.02562 * 10 8 2 12 12 C 1.53000 * 109.47194 * 174.42698 * 11 10 8 13 13 N 1.46493 * 115.55025 * 324.36095 * 12 11 10 14 14 C 1.36939 * 120.00007 * 295.00418 * 13 12 11 15 15 H 1.08001 * 120.00336 * 356.88756 * 14 13 12 16 16 C 1.38814 * 120.00249 * 176.88709 * 14 13 12 17 17 N 1.31621 * 119.99789 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00157 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47262 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47566 * 119.99844 * 18 16 14 21 21 H 1.48500 * 109.47272 * 239.99768 * 18 16 14 22 22 C 1.53000 * 117.50110 * 110.03395 * 12 11 10 23 23 C 1.52999 * 117.49598 * 178.69479 * 12 11 10 24 24 H 1.09005 * 109.46925 * 60.00116 * 1 2 3 25 25 H 1.09000 * 109.47055 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46967 * 300.00656 * 1 2 3 27 27 H 0.96998 * 119.99812 * 265.00485 * 4 2 1 28 28 H 0.97003 * 119.99780 * 0.02562 * 6 5 4 29 29 H 0.97005 * 120.00726 * 179.97438 * 6 5 4 30 30 H 0.97005 * 119.99432 * 0.02562 * 10 8 2 31 31 H 1.08992 * 109.47087 * 54.41918 * 11 10 8 32 32 H 1.09007 * 109.46554 * 294.42380 * 11 10 8 33 33 H 0.96998 * 119.99963 * 115.28088 * 13 12 11 34 34 H 0.96997 * 120.00046 * 179.97438 * 17 16 14 35 35 H 1.08993 * 117.50048 * 214.99848 * 22 12 11 36 36 H 1.08996 * 117.49730 * 0.02562 * 22 12 11 37 37 H 1.09005 * 117.50138 * 359.97071 * 23 12 11 38 38 H 1.09006 * 117.49698 * 144.96933 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1962 5 6 2.1471 -0.0184 -2.3571 6 7 2.5968 -0.6535 -3.4574 7 8 1.8583 1.1615 -2.4116 8 6 2.0323 -0.7104 1.2305 9 8 2.7296 -1.6966 1.1192 10 7 1.7068 -0.2500 2.4546 11 6 2.1954 -0.9402 3.6507 12 6 1.8029 -0.1426 4.8960 13 7 1.8243 1.3145 4.7457 14 6 3.0083 1.9614 4.5118 15 1 3.9329 1.4037 4.4880 16 6 3.0203 3.3340 4.3051 17 7 1.8935 4.0136 4.3335 18 14 4.6354 4.2163 3.9852 19 1 5.7484 3.2334 4.0033 20 1 4.5824 4.8803 2.6580 21 1 4.8595 5.2367 5.0406 22 6 0.7341 -0.7428 5.8116 23 6 2.1983 -0.7183 6.2573 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 2.2490 -1.6318 -1.1526 28 1 2.8276 -1.5947 -3.4139 29 1 2.6892 -0.1698 -4.2932 30 1 1.1488 0.5385 2.5435 31 1 3.2808 -1.0272 3.6021 32 1 1.7531 -1.9352 3.7022 33 1 1.0003 1.8214 4.8160 34 1 1.9019 4.9728 4.1895 35 1 0.0469 -0.0536 6.3021 36 1 0.3109 -1.7061 5.5270 37 1 2.7377 -1.6655 6.2658 38 1 2.4747 -0.0128 7.0410 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670772238.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:54 Heat of formation + Delta-G solvation = -59.214856 kcal Electronic energy + Delta-G solvation = -21136.881368 eV Core-core repulsion = 17821.332207 eV Total energy + Delta-G solvation = -3315.549161 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.148 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.45849 -40.34347 -38.97061 -36.00750 -35.20881 -35.00565 -34.66251 -31.62336 -31.26095 -27.94937 -25.93197 -25.24280 -23.19198 -22.22637 -21.22742 -20.70948 -19.63640 -19.11175 -18.60826 -17.49192 -17.33450 -16.73732 -16.42997 -16.00939 -15.88304 -15.62941 -15.40852 -15.00852 -14.88445 -14.41426 -14.14465 -13.60660 -13.43194 -13.32879 -12.96391 -12.85139 -12.63025 -12.23703 -12.15470 -11.91416 -11.73198 -11.53339 -11.03746 -10.89994 -10.74318 -10.61847 -10.12710 -9.90210 -9.02960 -7.96043 -5.23802 1.42776 1.46687 1.52679 1.53920 1.66483 2.12594 2.38901 2.53297 3.06816 3.40750 3.54912 3.65071 3.72807 3.91530 4.05535 4.14369 4.20884 4.44086 4.64598 4.75329 4.80472 4.88873 4.89383 5.06525 5.16201 5.18028 5.32602 5.42921 5.50633 5.59551 5.84553 6.01760 6.27144 6.57481 7.03251 7.16935 7.34691 7.61347 8.06068 8.30264 9.25867 Molecular weight = 270.15amu Principal moments of inertia in cm(-1) A = 0.014627 B = 0.006049 C = 0.004784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.759319 B = 4627.470714 C = 5851.760179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.146 3.854 3 H 0.092 0.908 4 N -0.719 5.719 5 C 0.702 3.298 6 N -0.843 5.843 7 O -0.642 6.642 8 C 0.512 3.488 9 O -0.577 6.577 10 N -0.691 5.691 11 C 0.159 3.841 12 C 0.098 3.902 13 N -0.695 5.695 14 C -0.219 4.219 15 H 0.065 0.935 16 C -0.060 4.060 17 N -0.958 5.958 18 Si 0.951 3.049 19 H -0.274 1.274 20 H -0.299 1.299 21 H -0.293 1.293 22 C -0.155 4.155 23 C -0.189 4.189 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.413 0.587 28 H 0.414 0.586 29 H 0.423 0.577 30 H 0.410 0.590 31 H 0.045 0.955 32 H 0.085 0.915 33 H 0.380 0.620 34 H 0.250 0.750 35 H 0.089 0.911 36 H 0.121 0.879 37 H 0.107 0.893 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.408 -14.543 -8.538 17.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.036 3.964 3 H 0.109 0.891 4 N -0.377 5.377 5 C 0.400 3.600 6 N -0.412 5.412 7 O -0.523 6.523 8 C 0.298 3.702 9 O -0.458 6.458 10 N -0.340 5.340 11 C 0.033 3.967 12 C 0.005 3.995 13 N -0.334 5.334 14 C -0.350 4.350 15 H 0.083 0.917 16 C -0.253 4.253 17 N -0.609 5.609 18 Si 0.782 3.218 19 H -0.199 1.199 20 H -0.226 1.226 21 H -0.221 1.221 22 C -0.193 4.193 23 C -0.229 4.229 24 H 0.086 0.914 25 H 0.096 0.904 26 H 0.098 0.902 27 H 0.251 0.749 28 H 0.245 0.755 29 H 0.256 0.744 30 H 0.247 0.753 31 H 0.064 0.936 32 H 0.103 0.897 33 H 0.213 0.787 34 H 0.059 0.941 35 H 0.107 0.893 36 H 0.139 0.861 37 H 0.125 0.875 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.008 -14.222 -8.508 16.843 hybrid contribution 0.831 1.009 -0.201 1.322 sum -2.177 -13.213 -8.709 15.974 Atomic orbital electron populations 1.22058 0.91121 1.03699 1.03763 1.20480 0.96837 0.96619 0.82471 0.89060 1.44638 1.71090 1.14522 1.07415 1.16109 0.78033 0.84381 0.81498 1.42690 1.71918 1.15729 1.10893 1.90964 1.59446 1.16468 1.85462 1.20635 0.79956 0.84341 0.85315 1.90616 1.39886 1.28126 1.87182 1.45731 1.51951 1.31708 1.04651 1.21051 0.98194 0.94489 0.82997 1.20466 1.04884 0.84153 0.89950 1.41802 1.06808 0.99760 1.85021 1.19282 0.87291 0.90104 1.38365 0.91740 1.25250 0.98859 0.97414 1.03824 1.69745 1.25779 1.06952 1.58401 0.85400 0.80930 0.78743 0.76683 1.19920 1.22628 1.22061 1.23276 0.91613 1.02486 1.01891 1.23373 0.98254 1.02527 0.98729 0.91402 0.90352 0.90236 0.74877 0.75474 0.74383 0.75302 0.93627 0.89716 0.78652 0.94054 0.89285 0.86076 0.87486 0.90521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.38 71.98 0.68 -2.93 16 2 C 0.15 4.33 2.98 44.24 0.13 4.46 16 3 H 0.09 3.24 7.58 -2.39 -0.02 3.22 16 4 N -0.72 -18.44 4.96 -461.41 -2.29 -20.72 16 5 C 0.70 19.06 8.80 179.06 1.58 20.64 16 6 N -0.84 -13.48 8.88 -184.75 -1.64 -15.12 16 7 O -0.64 -23.83 16.84 -4.00 -0.07 -23.89 16 8 C 0.51 16.77 7.22 87.66 0.63 17.40 16 9 O -0.58 -20.76 15.83 -3.05 -0.05 -20.81 16 10 N -0.69 -23.05 5.29 -463.07 -2.45 -25.50 16 11 C 0.16 5.23 5.69 86.38 0.49 5.72 16 12 C 0.10 3.39 2.46 3.60 0.01 3.40 16 13 N -0.69 -31.03 4.49 -303.36 -1.36 -32.40 16 14 C -0.22 -11.30 9.81 84.03 0.82 -10.48 16 15 H 0.06 3.39 7.83 -2.91 -0.02 3.37 16 16 C -0.06 -3.31 5.50 84.86 0.47 -2.84 16 17 N -0.96 -55.36 13.06 21.65 0.28 -55.08 16 18 Si 0.95 46.02 29.55 68.60 2.03 48.04 16 19 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 20 H -0.30 -14.77 7.11 99.48 0.71 -14.07 16 21 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 22 C -0.16 -4.25 10.11 30.62 0.31 -3.94 16 23 C -0.19 -5.80 10.18 30.62 0.31 -5.49 16 24 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 25 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.08 1.88 7.56 -2.39 -0.02 1.86 16 27 H 0.41 9.04 7.80 -92.71 -0.72 8.31 16 28 H 0.41 3.85 8.84 -92.71 -0.82 3.03 16 29 H 0.42 5.66 8.93 -92.70 -0.83 4.83 16 30 H 0.41 14.30 7.20 -92.70 -0.67 13.64 16 31 H 0.05 1.69 8.13 -2.39 -0.02 1.67 16 32 H 0.08 2.36 7.91 -2.38 -0.02 2.34 16 33 H 0.38 18.23 8.03 -92.71 -0.74 17.48 16 34 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 35 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.12 2.56 8.06 -2.39 -0.02 2.54 16 37 H 0.11 2.77 8.14 -2.38 -0.02 2.75 16 38 H 0.08 2.66 8.14 -2.38 -0.02 2.64 16 Total: -1.00 -69.39 329.25 -2.76 -72.15 By element: Atomic # 1 Polarization: 50.03 SS G_CDS: -2.65 Total: 47.38 kcal Atomic # 6 Polarization: 20.52 SS G_CDS: 5.43 Total: 25.95 kcal Atomic # 7 Polarization: -141.37 SS G_CDS: -7.45 Total: -148.82 kcal Atomic # 8 Polarization: -44.58 SS G_CDS: -0.12 Total: -44.70 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.04 kcal Total: -69.39 -2.76 -72.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670772238.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.935 kcal (2) G-P(sol) polarization free energy of solvation -69.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds