Wall clock time and date at job start Mon Mar 30 2020 01:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47048 * 2 1 4 4 C 1.53002 * 109.47142 * 119.99863 * 2 1 3 5 5 N 1.46505 * 109.46978 * 175.00254 * 4 2 1 6 6 C 1.46495 * 120.00186 * 89.99552 * 5 4 2 7 7 C 1.36934 * 119.99707 * 270.00316 * 5 4 2 8 8 H 1.07999 * 120.00278 * 22.00553 * 7 5 4 9 9 C 1.38817 * 120.00058 * 202.01148 * 7 5 4 10 10 N 1.31624 * 119.99809 * 14.21778 * 9 7 5 11 11 Si 1.86798 * 120.00472 * 194.21772 * 9 7 5 12 12 H 1.48505 * 109.46842 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47154 * 119.99702 * 11 9 7 14 14 H 1.48495 * 109.46968 * 239.99938 * 11 9 7 15 15 N 1.46497 * 109.47002 * 239.99760 * 2 1 3 16 16 C 1.34779 * 119.99766 * 85.00118 * 15 2 1 17 17 O 1.21283 * 120.00317 * 359.97438 * 16 15 2 18 18 C 1.50702 * 120.00103 * 179.97438 * 16 15 2 19 19 H 1.09001 * 110.49348 * 317.30401 * 18 16 15 20 20 C 1.54111 * 110.54616 * 80.00019 * 18 16 15 21 21 N 1.47050 * 103.86525 * 118.59607 * 20 18 16 22 22 C 1.33947 * 109.17845 * 359.97438 * 21 20 18 23 23 O 1.21582 * 123.04478 * 179.97438 * 22 21 20 24 24 N 1.33950 * 113.91467 * 0.02562 * 22 21 20 25 25 H 1.09003 * 109.46664 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47510 * 60.00280 * 1 2 3 27 27 H 1.09006 * 109.47025 * 299.99526 * 1 2 3 28 28 H 1.08996 * 109.46909 * 294.99509 * 4 2 1 29 29 H 1.08995 * 109.47458 * 55.00128 * 4 2 1 30 30 H 1.09000 * 109.47198 * 95.14422 * 6 5 4 31 31 H 1.09002 * 109.47451 * 215.14303 * 6 5 4 32 32 H 1.09001 * 109.47568 * 335.14480 * 6 5 4 33 33 H 0.96993 * 120.00482 * 180.02562 * 10 9 7 34 34 H 0.96994 * 120.00231 * 264.99307 * 15 2 1 35 35 H 1.09000 * 110.54531 * 237.19400 * 20 18 16 36 36 H 1.09005 * 110.54829 * 359.97438 * 20 18 16 37 37 H 0.96992 * 125.40964 * 180.02562 * 21 20 18 38 38 H 0.97001 * 125.40777 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8263 1.1906 6 6 4.3343 0.2342 1.7612 7 6 4.0850 -1.9157 0.6023 8 1 3.5312 -2.5055 -0.1132 9 6 5.3898 -2.2622 0.9255 10 7 5.9684 -1.7333 1.9828 11 14 6.3244 -3.4790 -0.1399 12 1 5.4567 -3.9250 -1.2595 13 1 7.5413 -2.8262 -0.6859 14 1 6.7179 -4.6536 0.6790 15 7 2.0183 -0.6907 -1.1961 16 6 2.1470 -0.0183 -2.3571 17 8 1.8581 1.1584 -2.4117 18 6 2.6498 -0.7285 -3.5875 19 1 3.4892 -1.3774 -3.3373 20 6 1.5164 -1.5397 -4.2449 21 7 1.3830 -0.9400 -5.5809 22 6 2.2727 0.0532 -5.7083 23 8 2.3801 0.7217 -6.7181 24 7 3.0343 0.2424 -4.6227 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 0.5138 0.8901 28 1 1.7517 -0.1582 2.1369 29 1 1.6054 -1.7197 1.2953 30 1 4.6182 -0.0347 2.7786 31 1 5.2313 0.3571 1.1542 32 1 3.7743 1.1692 1.7753 33 1 6.8802 -1.9750 2.2086 34 1 2.2491 -1.6317 -1.1525 35 1 1.7940 -2.5908 -4.3234 36 1 0.5900 -1.4291 -3.6812 37 1 0.7506 -1.2187 -6.2615 38 1 3.7293 0.9132 -4.5337 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754324336.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:50 Heat of formation + Delta-G solvation = -26.697530 kcal Electronic energy + Delta-G solvation = -21680.887640 eV Core-core repulsion = 18366.748535 eV Total energy + Delta-G solvation = -3314.139104 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.148 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.24575 -39.11590 -36.66108 -36.00638 -34.17165 -33.00317 -31.66824 -30.47401 -28.75407 -26.28215 -25.71995 -24.13020 -21.99841 -21.76970 -20.61627 -19.97782 -17.97485 -17.56704 -16.65168 -16.33957 -15.77428 -15.46080 -15.14280 -14.62748 -14.48370 -13.95541 -13.83480 -13.57616 -13.17266 -13.08593 -12.92247 -12.57229 -12.14090 -11.92882 -11.72672 -11.17003 -10.96993 -10.92654 -10.50290 -10.41772 -10.32411 -10.12615 -9.99344 -9.92907 -9.43389 -8.81945 -8.68881 -8.59393 -6.86582 -5.84598 -3.31366 2.61831 2.89342 3.07288 3.26685 3.29654 3.36380 3.47263 4.01108 4.24715 4.35816 4.76138 4.89534 5.13884 5.22439 5.35969 5.39019 5.51643 5.57027 5.70900 5.83958 6.05088 6.09948 6.34427 6.37632 6.67376 6.73161 6.92155 6.94944 7.12307 7.29009 7.32931 7.56303 7.67945 7.91486 8.25111 8.51923 8.61345 9.09338 9.73735 10.24023 11.19614 Molecular weight = 270.15amu Principal moments of inertia in cm(-1) A = 0.017224 B = 0.006381 C = 0.005194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.295436 B = 4386.751894 C = 5389.280055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.117 3.883 3 H 0.077 0.923 4 C 0.141 3.859 5 N -0.599 5.599 6 C 0.163 3.837 7 C -0.255 4.255 8 H 0.066 0.934 9 C 0.004 3.996 10 N -0.901 5.901 11 Si 0.900 3.100 12 H -0.278 1.278 13 H -0.290 1.290 14 H -0.290 1.290 15 N -0.688 5.688 16 C 0.502 3.498 17 O -0.540 6.540 18 C 0.099 3.901 19 H 0.120 0.880 20 C 0.105 3.895 21 N -0.740 5.740 22 C 0.706 3.294 23 O -0.591 6.591 24 N -0.711 5.711 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.031 0.969 31 H 0.040 0.960 32 H -0.002 1.002 33 H 0.253 0.747 34 H 0.404 0.596 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.430 0.570 38 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.504 -2.370 -6.649 11.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.010 3.990 3 H 0.096 0.904 4 C 0.013 3.987 5 N -0.321 5.321 6 C 0.018 3.982 7 C -0.385 4.385 8 H 0.084 0.916 9 C -0.195 4.195 10 N -0.545 5.545 11 Si 0.730 3.270 12 H -0.203 1.203 13 H -0.216 1.216 14 H -0.217 1.217 15 N -0.340 5.340 16 C 0.285 3.715 17 O -0.418 6.418 18 C -0.011 4.011 19 H 0.137 0.863 20 C -0.020 4.020 21 N -0.404 5.404 22 C 0.405 3.595 23 O -0.470 6.470 24 N -0.372 5.372 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.016 0.984 33 H 0.063 0.937 34 H 0.241 0.759 35 H 0.113 0.887 36 H 0.104 0.896 37 H 0.271 0.729 38 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -9.449 -1.219 -7.069 11.864 hybrid contribution 0.851 -1.021 -0.465 1.408 sum -8.598 -2.240 -7.535 11.650 Atomic orbital electron populations 1.22123 0.96395 1.01497 1.01750 1.21929 0.92267 0.98359 0.86479 0.90435 1.21059 0.86158 0.98301 0.93221 1.43842 0.98849 1.21094 1.68337 1.20779 0.92851 0.86265 0.98299 1.19012 0.96775 1.05190 1.17499 0.91639 1.25013 0.98862 0.98871 0.96768 1.70075 1.13677 1.46060 1.24702 0.86286 0.80200 0.80701 0.79840 1.20288 1.21639 1.21721 1.45945 1.64982 1.14436 1.08603 1.20507 0.78652 0.87640 0.84686 1.90698 1.50321 1.15724 1.85010 1.21923 0.99068 0.91215 0.88909 0.86275 1.22259 0.98248 0.97845 0.83696 1.45025 1.40649 1.37386 1.17297 1.15852 0.79473 0.80692 0.83478 1.90977 1.73211 1.51910 1.30869 1.44799 1.40345 1.38762 1.13329 0.92757 0.92969 0.91990 0.92942 0.92879 0.95095 0.94153 0.98368 0.93671 0.75896 0.88707 0.89598 0.72851 0.72321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.48 37.16 0.35 -1.69 16 2 C 0.12 1.85 2.88 -67.93 -0.20 1.66 16 3 H 0.08 1.44 7.58 -51.93 -0.39 1.04 16 4 C 0.14 2.48 5.30 -4.04 -0.02 2.46 16 5 N -0.60 -13.33 2.82 -181.12 -0.51 -13.84 16 6 C 0.16 3.79 8.98 59.84 0.54 4.33 16 7 C -0.26 -6.03 8.85 -15.06 -0.13 -6.16 16 8 H 0.07 1.41 6.23 -52.49 -0.33 1.08 16 9 C 0.00 0.10 5.08 -17.43 -0.09 0.01 16 10 N -0.90 -24.70 10.72 55.49 0.59 -24.10 16 11 Si 0.90 19.81 29.58 -169.99 -5.03 14.79 16 12 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 13 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 14 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 15 N -0.69 -10.30 4.49 -53.80 -0.24 -10.54 16 16 C 0.50 7.75 6.92 -10.98 -0.08 7.68 16 17 O -0.54 -10.39 16.22 5.55 0.09 -10.30 16 18 C 0.10 1.22 4.17 -68.20 -0.28 0.94 16 19 H 0.12 1.31 8.14 -51.93 -0.42 0.89 16 20 C 0.11 0.97 7.70 -3.16 -0.02 0.95 16 21 N -0.74 -8.14 6.37 -64.70 -0.41 -8.55 16 22 C 0.71 10.73 8.92 -88.40 -0.79 9.94 16 23 O -0.59 -11.26 18.05 5.29 0.10 -11.17 16 24 N -0.71 -9.98 5.60 -59.33 -0.33 -10.31 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.88 8.07 -51.93 -0.42 0.46 16 29 H 0.05 0.90 8.04 -51.93 -0.42 0.48 16 30 H 0.03 0.78 7.36 -51.93 -0.38 0.40 16 31 H 0.04 1.02 7.31 -51.93 -0.38 0.64 16 32 H 0.00 -0.05 8.03 -51.93 -0.42 -0.46 16 33 H 0.25 6.78 8.31 -40.82 -0.34 6.45 16 34 H 0.40 5.71 6.51 -40.82 -0.27 5.44 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.09 0.74 7.72 -51.93 -0.40 0.34 16 37 H 0.43 3.71 8.96 -40.82 -0.37 3.34 16 38 H 0.43 5.99 8.96 -40.82 -0.37 5.62 16 LS Contribution 317.23 15.07 4.78 4.78 Total: -1.00 -33.02 317.23 -7.07 -40.09 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -5.38 Total: 9.05 kcal Atomic # 6 Polarization: 20.83 SS G_CDS: -0.72 Total: 20.11 kcal Atomic # 7 Polarization: -66.44 SS G_CDS: -0.90 Total: -67.35 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: 0.19 Total: -21.47 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.03 Total: 14.79 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.02 -7.07 -40.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754324336.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.389 kcal (2) G-P(sol) polarization free energy of solvation -33.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds