Wall clock time and date at job start Mon Mar 30 2020 01:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46809 * 2 1 4 4 C 1.53002 * 109.47065 * 120.00026 * 2 1 3 5 5 N 1.46506 * 109.46795 * 175.00100 * 4 2 1 6 6 C 1.46498 * 120.00024 * 89.99990 * 5 4 2 7 7 C 1.36938 * 119.99606 * 270.00060 * 5 4 2 8 8 H 1.07995 * 120.00594 * 22.00717 * 7 5 4 9 9 C 1.38820 * 119.99743 * 202.01145 * 7 5 4 10 10 N 1.31615 * 119.99730 * 14.21576 * 9 7 5 11 11 Si 1.86800 * 120.00061 * 194.21460 * 9 7 5 12 12 H 1.48500 * 109.46989 * 89.99635 * 11 9 7 13 13 H 1.48495 * 109.47245 * 209.99974 * 11 9 7 14 14 H 1.48497 * 109.47136 * 330.00046 * 11 9 7 15 15 N 1.46498 * 109.47070 * 240.00029 * 2 1 3 16 16 C 1.34771 * 120.00301 * 84.99674 * 15 2 1 17 17 O 1.21286 * 120.00068 * 0.02562 * 16 15 2 18 18 C 1.50697 * 120.00635 * 180.27584 * 16 15 2 19 19 H 1.09009 * 110.48859 * 40.42620 * 18 16 15 20 20 C 1.54109 * 110.55081 * 277.72839 * 18 16 15 21 21 N 1.47049 * 103.86063 * 241.40292 * 20 18 16 22 22 C 1.33944 * 109.18039 * 359.97438 * 21 20 18 23 23 O 1.21592 * 123.03972 * 180.02562 * 22 21 20 24 24 N 1.34256 * 113.96499 * 359.92091 * 22 21 20 25 25 H 1.09007 * 109.47129 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46813 * 299.99708 * 1 2 3 27 27 H 1.08995 * 109.47740 * 59.99796 * 1 2 3 28 28 H 1.09001 * 109.47280 * 294.99508 * 4 2 1 29 29 H 1.08996 * 109.47196 * 55.00583 * 4 2 1 30 30 H 1.08995 * 109.47032 * 95.14448 * 6 5 4 31 31 H 1.09004 * 109.46883 * 215.13715 * 6 5 4 32 32 H 1.08997 * 109.47421 * 335.13986 * 6 5 4 33 33 H 0.96998 * 119.99906 * 180.02562 * 10 9 7 34 34 H 0.97004 * 120.00007 * 264.99787 * 15 2 1 35 35 H 1.09005 * 110.54400 * 359.97438 * 20 18 16 36 36 H 1.08996 * 110.54812 * 122.80388 * 20 18 16 37 37 H 0.97006 * 125.40354 * 179.97438 * 21 20 18 38 38 H 0.97002 * 125.58793 * 180.08194 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5001 -0.8263 1.1905 6 6 4.3343 0.2341 1.7612 7 6 4.0849 -1.9158 0.6022 8 1 3.5312 -2.5056 -0.1132 9 6 5.3898 -2.2623 0.9254 10 7 5.9684 -1.7333 1.9826 11 14 6.3243 -3.4792 -0.1400 12 1 7.0472 -2.7467 -1.2105 13 1 7.3000 -4.2226 0.6970 14 1 5.3685 -4.4359 -0.7535 15 7 2.0183 -0.6906 -1.1962 16 6 2.1470 -0.0183 -2.3571 17 8 1.8589 1.1586 -2.4116 18 6 2.6434 -0.7302 -3.5891 19 1 2.2082 -1.7275 -3.6549 20 6 4.1823 -0.8107 -3.5842 21 7 4.5779 -0.0661 -4.7890 22 6 3.4790 0.3824 -5.4097 23 8 3.5163 1.0318 -6.4370 24 7 2.3320 0.0488 -4.7969 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.7517 -0.1583 2.1370 29 1 1.6055 -1.7198 1.2951 30 1 4.6182 -0.0349 2.7786 31 1 5.2313 0.3570 1.1542 32 1 3.7743 1.1691 1.7754 33 1 6.8802 -1.9751 2.2083 34 1 2.2490 -1.6318 -1.1526 35 1 4.5874 -0.3354 -2.6908 36 1 4.5113 -1.8478 -3.6501 37 1 5.4899 0.0774 -5.0868 38 1 1.4410 0.2838 -5.1000 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754324338.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:53 Heat of formation + Delta-G solvation = -27.185661 kcal Electronic energy + Delta-G solvation = -21872.788538 eV Core-core repulsion = 18558.628267 eV Total energy + Delta-G solvation = -3314.160271 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.148 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.15624 -39.09266 -36.63964 -35.95225 -34.16710 -32.93295 -31.66547 -30.47410 -28.64960 -26.29133 -25.72726 -24.05987 -21.94105 -21.71420 -20.60442 -19.99033 -17.90520 -17.53882 -16.62344 -16.27415 -15.78562 -15.32719 -15.13799 -14.73360 -14.21549 -13.98908 -13.76329 -13.64139 -13.15910 -13.05785 -12.81726 -12.34613 -12.15185 -12.01105 -11.71449 -11.16997 -10.97063 -10.95870 -10.51469 -10.42979 -10.26880 -10.13690 -10.00526 -9.92398 -9.32624 -8.75920 -8.69897 -8.59372 -6.87823 -5.85765 -3.32625 2.66430 2.89728 3.16557 3.23324 3.27447 3.34146 3.49987 4.08762 4.33880 4.37326 4.84224 4.86394 5.21542 5.35254 5.39144 5.48085 5.55932 5.70052 5.75254 5.84256 6.05257 6.10355 6.34764 6.37932 6.67128 6.72934 6.95212 7.00075 7.18033 7.27895 7.38919 7.55114 7.67012 7.91796 8.23911 8.52964 8.67074 9.08163 9.72452 10.23237 11.18417 Molecular weight = 270.15amu Principal moments of inertia in cm(-1) A = 0.015446 B = 0.007517 C = 0.005562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.330024 B = 3724.231244 C = 5032.888626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.117 3.883 3 H 0.077 0.923 4 C 0.141 3.859 5 N -0.599 5.599 6 C 0.163 3.837 7 C -0.256 4.256 8 H 0.066 0.934 9 C 0.005 3.995 10 N -0.901 5.901 11 Si 0.897 3.103 12 H -0.287 1.287 13 H -0.291 1.291 14 H -0.278 1.278 15 N -0.689 5.689 16 C 0.501 3.499 17 O -0.540 6.540 18 C 0.104 3.896 19 H 0.112 0.888 20 C 0.103 3.897 21 N -0.737 5.737 22 C 0.707 3.293 23 O -0.593 6.593 24 N -0.715 5.715 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.031 0.969 31 H 0.040 0.960 32 H -0.002 1.002 33 H 0.253 0.747 34 H 0.404 0.596 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.431 0.569 38 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.006 -1.719 -5.979 9.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.010 3.990 3 H 0.096 0.904 4 C 0.012 3.988 5 N -0.321 5.321 6 C 0.018 3.982 7 C -0.385 4.385 8 H 0.084 0.916 9 C -0.194 4.194 10 N -0.545 5.545 11 Si 0.727 3.273 12 H -0.214 1.214 13 H -0.218 1.218 14 H -0.203 1.203 15 N -0.340 5.340 16 C 0.284 3.716 17 O -0.417 6.417 18 C -0.007 4.007 19 H 0.129 0.871 20 C -0.023 4.023 21 N -0.400 5.400 22 C 0.406 3.594 23 O -0.472 6.472 24 N -0.377 5.377 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.016 0.984 33 H 0.064 0.936 34 H 0.241 0.759 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.273 0.727 38 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -6.997 -0.592 -6.403 9.503 hybrid contribution 0.795 -1.043 -0.461 1.390 sum -6.202 -1.634 -6.864 9.394 Atomic orbital electron populations 1.22119 0.96383 1.01506 1.01736 1.21920 0.92285 0.98340 0.86479 0.90444 1.21062 0.86166 0.98305 0.93225 1.43837 0.98827 1.21091 1.68334 1.20780 0.92836 0.86275 0.98304 1.18991 0.96748 1.05228 1.17563 0.91631 1.25009 0.98877 0.98820 0.96738 1.70064 1.13712 1.46082 1.24616 0.86390 0.80135 0.80830 0.79990 1.21374 1.21760 1.20324 1.45954 1.64880 1.14419 1.08737 1.20548 0.78629 0.87612 0.84817 1.90700 1.50408 1.15605 1.85032 1.21853 0.96617 0.96431 0.85796 0.87055 1.22321 0.91092 0.98865 0.90028 1.45050 1.08325 1.59067 1.27514 1.15919 0.81493 0.79180 0.82852 1.90969 1.86236 1.45004 1.24948 1.44839 1.08290 1.59241 1.25339 0.92775 0.92007 0.92946 0.92956 0.92886 0.95106 0.94141 0.98389 0.93616 0.75908 0.88414 0.88681 0.72706 0.72670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.48 37.16 0.35 -1.71 16 2 C 0.12 1.85 2.88 -67.93 -0.20 1.66 16 3 H 0.08 1.43 7.58 -51.93 -0.39 1.04 16 4 C 0.14 2.46 5.30 -4.04 -0.02 2.44 16 5 N -0.60 -13.08 2.82 -181.12 -0.51 -13.59 16 6 C 0.16 3.74 8.98 59.85 0.54 4.27 16 7 C -0.26 -5.89 8.85 -15.06 -0.13 -6.02 16 8 H 0.07 1.37 6.23 -52.49 -0.33 1.05 16 9 C 0.00 0.12 5.08 -17.43 -0.09 0.03 16 10 N -0.90 -24.27 10.72 55.49 0.59 -23.68 16 11 Si 0.90 19.16 29.58 -169.99 -5.03 14.13 16 12 H -0.29 -6.06 7.11 56.52 0.40 -5.66 16 13 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 14 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 15 N -0.69 -10.28 4.49 -53.81 -0.24 -10.52 16 16 C 0.50 7.73 6.91 -10.99 -0.08 7.65 16 17 O -0.54 -10.40 16.24 5.55 0.09 -10.31 16 18 C 0.10 1.27 4.16 -68.20 -0.28 0.99 16 19 H 0.11 1.00 8.14 -51.92 -0.42 0.57 16 20 C 0.10 1.27 7.70 -3.16 -0.02 1.25 16 21 N -0.74 -9.77 6.37 -64.62 -0.41 -10.18 16 22 C 0.71 11.27 8.92 -88.13 -0.79 10.49 16 23 O -0.59 -11.61 18.05 5.28 0.10 -11.51 16 24 N -0.72 -9.69 5.64 -59.24 -0.33 -10.03 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.88 8.07 -51.93 -0.42 0.46 16 29 H 0.05 0.89 8.04 -51.93 -0.42 0.48 16 30 H 0.03 0.77 7.36 -51.93 -0.38 0.39 16 31 H 0.04 1.01 7.31 -51.93 -0.38 0.63 16 32 H 0.00 -0.05 8.03 -51.93 -0.42 -0.47 16 33 H 0.25 6.71 8.31 -40.82 -0.34 6.38 16 34 H 0.40 5.68 6.51 -40.82 -0.27 5.42 16 35 H 0.10 1.41 7.72 -51.93 -0.40 1.01 16 36 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.43 4.90 8.96 -40.82 -0.37 4.53 16 38 H 0.43 5.28 8.96 -40.82 -0.37 4.92 16 LS Contribution 317.27 15.07 4.78 4.78 Total: -1.00 -32.07 317.27 -7.07 -39.14 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -5.38 Total: 10.71 kcal Atomic # 6 Polarization: 21.77 SS G_CDS: -0.72 Total: 21.05 kcal Atomic # 7 Polarization: -67.09 SS G_CDS: -0.90 Total: -68.00 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: 0.19 Total: -21.82 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.07 -7.07 -39.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754324338.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.955 kcal (2) G-P(sol) polarization free energy of solvation -32.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds