Wall clock time and date at job start Mon Mar 30 2020 01:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.32965 * 2 1 4 4 C 1.54474 * 110.37512 * 237.62644 * 2 1 3 5 5 C 1.54506 * 104.06254 * 217.19145 * 4 2 1 6 6 C 1.54479 * 104.06648 * 0.02562 * 5 4 2 7 7 H 1.09001 * 110.46432 * 265.10484 * 6 5 4 8 8 C 1.52994 * 110.37363 * 142.81086 * 6 5 4 9 9 O 1.45202 * 109.46919 * 178.17112 * 8 6 5 10 10 C 1.34230 * 116.99836 * 180.02562 * 9 8 6 11 11 O 1.20833 * 119.99930 * 359.97438 * 10 9 8 12 12 C 1.50697 * 120.00262 * 180.27336 * 10 9 8 13 13 C 1.52996 * 109.47491 * 179.72204 * 12 10 9 14 14 C 1.53003 * 109.47301 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47298 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.47156 * 180.02562 * 15 14 13 17 17 H 1.07991 * 119.99776 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99589 * 180.02562 * 16 15 14 19 19 N 1.31518 * 119.99813 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00498 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47152 * 90.00133 * 20 18 16 22 22 H 1.48502 * 109.47002 * 210.00075 * 20 18 16 23 23 H 1.48504 * 109.47004 * 329.99977 * 20 18 16 24 24 O 1.44423 * 110.37044 * 122.24412 * 2 1 3 25 25 H 1.08999 * 109.47620 * 299.20314 * 1 2 3 26 26 H 1.08998 * 109.46718 * 59.20585 * 1 2 3 27 27 H 1.09007 * 109.47181 * 179.20163 * 1 2 3 28 28 H 1.08998 * 110.51433 * 335.83819 * 4 2 1 29 29 H 1.08999 * 110.50970 * 98.54596 * 4 2 1 30 30 H 1.09005 * 110.51070 * 241.35802 * 5 4 2 31 31 H 1.08997 * 110.50987 * 118.64787 * 5 4 2 32 32 H 1.08998 * 109.47242 * 58.16541 * 8 6 5 33 33 H 1.09004 * 109.46797 * 298.16357 * 8 6 5 34 34 H 1.09004 * 109.46801 * 299.72165 * 12 10 9 35 35 H 1.09000 * 109.47461 * 59.71633 * 12 10 9 36 36 H 1.09004 * 109.47066 * 299.99799 * 13 12 10 37 37 H 1.08994 * 109.47405 * 59.99969 * 13 12 10 38 38 H 1.08996 * 109.47187 * 300.00268 * 14 13 12 39 39 H 1.09008 * 109.46785 * 59.99617 * 14 13 12 40 40 H 1.09004 * 109.47392 * 300.00171 * 15 14 13 41 41 H 1.09008 * 109.46760 * 59.99946 * 15 14 13 42 42 H 0.96998 * 120.00580 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0678 -0.7754 -1.2230 5 6 3.3178 -1.5064 -0.6841 6 6 3.3870 -1.0868 0.8010 7 1 4.0522 -0.2323 0.9250 8 6 3.8597 -2.2583 1.6640 9 8 3.9591 -1.8306 3.0481 10 6 4.3643 -2.7468 3.9414 11 8 4.6269 -3.8692 3.5789 12 6 4.4854 -2.3777 5.3974 13 6 4.9557 -3.5956 6.1951 14 6 5.0792 -3.2206 7.6733 15 6 5.5489 -4.4387 8.4710 16 6 5.6699 -4.0694 9.9271 17 1 5.4357 -3.0662 10.2509 18 6 6.0806 -5.0122 10.8454 19 7 6.1868 -4.6898 12.1160 20 14 6.4878 -6.7469 10.2849 21 1 7.9275 -6.8274 9.9300 22 1 6.1943 -7.7034 11.3822 23 1 5.6653 -7.0891 9.0967 24 8 2.0327 -0.7223 1.1451 25 1 -0.3634 0.5014 0.8970 26 1 -0.3633 0.5261 -0.8828 27 1 -0.3634 -1.0276 -0.0143 28 1 1.3277 -1.4936 -1.5756 29 1 2.3430 -0.0861 -2.0213 30 1 4.2110 -1.1785 -1.2160 31 1 3.1955 -2.5860 -0.7702 32 1 4.8366 -2.5946 1.3166 33 1 3.1449 -3.0776 1.5874 34 1 5.2083 -1.5694 5.5084 35 1 3.5150 -2.0510 5.7714 36 1 4.2327 -4.4038 6.0841 37 1 5.9260 -3.9222 5.8212 38 1 5.8022 -2.4125 7.7839 39 1 4.1089 -2.8936 8.0474 40 1 4.8254 -5.2465 8.3603 41 1 6.5190 -4.7659 8.0968 42 1 6.4754 -5.3531 12.7623 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805697708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:11 Heat of formation + Delta-G solvation = -184.798409 kcal Electronic energy + Delta-G solvation = -20050.481984 eV Core-core repulsion = 16800.734704 eV Total energy + Delta-G solvation = -3249.747281 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.166 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.62405 -40.48431 -37.80678 -36.65503 -34.65140 -33.39914 -33.22553 -32.02397 -29.51817 -27.79751 -25.13675 -23.91321 -22.52854 -22.01546 -21.78830 -21.40479 -18.91432 -18.60266 -17.98288 -17.63643 -17.23320 -16.80156 -16.32312 -16.04021 -15.81990 -14.81314 -14.75539 -14.60530 -14.35411 -13.86636 -13.80697 -13.67434 -13.48340 -13.20254 -12.87359 -12.81472 -12.69022 -12.38380 -12.32009 -12.13413 -11.92778 -11.75709 -11.70332 -11.65657 -11.56459 -11.37338 -11.31216 -11.21918 -10.76789 -10.75295 -8.28789 -6.32088 1.15832 1.35660 1.37328 1.49992 1.60807 2.36684 2.75233 3.06514 3.45875 3.58146 3.81308 3.90204 3.94767 4.00144 4.05000 4.09071 4.27831 4.32224 4.36203 4.50027 4.52105 4.59905 4.66714 4.73565 4.80671 4.82833 4.91927 5.00768 5.06227 5.09469 5.17043 5.17741 5.20542 5.26495 5.38545 5.59360 5.64835 5.68841 5.91355 6.30257 6.70760 6.76204 7.32584 8.87818 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.046710 B = 0.002460 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.294882 B =11379.254379 C =11683.295629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.057 3.943 3 H 0.078 0.922 4 C -0.145 4.145 5 C -0.145 4.145 6 C 0.075 3.925 7 H 0.088 0.912 8 C 0.066 3.934 9 O -0.356 6.356 10 C 0.466 3.534 11 O -0.541 6.541 12 C -0.106 4.106 13 C -0.101 4.101 14 C -0.095 4.095 15 C -0.017 4.017 16 C -0.531 4.531 17 H 0.036 0.964 18 C 0.001 3.999 19 N -0.951 5.951 20 Si 0.949 3.051 21 H -0.266 1.266 22 H -0.283 1.283 23 H -0.251 1.251 24 O -0.393 6.393 25 H 0.055 0.945 26 H 0.092 0.908 27 H 0.056 0.944 28 H 0.081 0.919 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.067 0.933 34 H 0.128 0.872 35 H 0.123 0.877 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.015 0.985 41 H 0.016 0.984 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.153 10.072 -32.087 34.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.000 4.000 3 H 0.096 0.904 4 C -0.183 4.183 5 C -0.183 4.183 6 C 0.018 3.982 7 H 0.106 0.894 8 C -0.008 4.008 9 O -0.273 6.273 10 C 0.311 3.689 11 O -0.432 6.432 12 C -0.143 4.143 13 C -0.139 4.139 14 C -0.132 4.132 15 C -0.054 4.054 16 C -0.569 4.569 17 H 0.055 0.945 18 C -0.195 4.195 19 N -0.592 5.592 20 Si 0.773 3.227 21 H -0.192 1.192 22 H -0.209 1.209 23 H -0.174 1.174 24 O -0.314 6.314 25 H 0.074 0.926 26 H 0.111 0.889 27 H 0.075 0.925 28 H 0.099 0.901 29 H 0.118 0.882 30 H 0.122 0.878 31 H 0.098 0.902 32 H 0.114 0.886 33 H 0.085 0.915 34 H 0.146 0.854 35 H 0.141 0.859 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.167 9.640 -31.882 34.294 hybrid contribution 0.357 -0.878 0.344 1.008 sum -7.809 8.762 -31.539 33.652 Atomic orbital electron populations 1.21832 0.92611 1.02736 1.03181 1.23255 0.96063 0.95902 0.84790 0.90442 1.23014 0.97096 1.00055 0.98121 1.22943 1.00440 1.02201 0.92682 1.23118 0.85216 0.96147 0.93747 0.89436 1.23336 1.02484 0.97440 0.77497 1.86552 1.78205 1.42906 1.19625 1.24296 0.71772 0.82676 0.90182 1.90650 1.47642 1.23311 1.81552 1.21500 1.06725 1.01201 0.84909 1.21386 1.01690 0.96549 0.94232 1.21332 1.01072 0.98097 0.92720 1.19577 0.96188 0.96040 0.93633 1.21545 1.44505 0.97822 0.92996 0.94545 1.26027 0.95006 1.03680 0.94791 1.70066 1.49579 1.36545 1.03024 0.85665 0.79515 0.78909 0.78610 1.19155 1.20874 1.17428 1.89219 1.27088 1.75127 1.39927 0.92625 0.88917 0.92499 0.90073 0.88190 0.87753 0.90191 0.88637 0.91457 0.85426 0.85938 0.92394 0.91996 0.92126 0.92378 0.96626 0.96579 0.92539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.52 71.98 0.69 -0.98 16 2 C 0.06 0.74 3.92 31.10 0.12 0.87 16 3 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 4 C -0.15 -1.26 6.63 31.61 0.21 -1.05 16 5 C -0.15 -1.44 6.63 31.61 0.21 -1.23 16 6 C 0.08 1.21 3.58 31.09 0.11 1.32 16 7 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 8 C 0.07 1.34 5.07 71.98 0.37 1.71 16 9 O -0.36 -8.95 10.22 -49.83 -0.51 -9.46 16 10 C 0.47 12.89 7.96 71.23 0.57 13.45 16 11 O -0.54 -18.13 15.73 21.94 0.35 -17.78 16 12 C -0.11 -2.62 5.81 29.85 0.17 -2.45 16 13 C -0.10 -3.20 4.50 30.59 0.14 -3.06 16 14 C -0.09 -3.61 5.15 30.59 0.16 -3.45 16 15 C -0.02 -0.82 4.04 29.85 0.12 -0.70 16 16 C -0.53 -31.28 9.66 25.60 0.25 -31.03 16 17 H 0.04 2.33 7.99 -2.91 -0.02 2.30 16 18 C 0.00 0.09 5.47 84.65 0.46 0.55 16 19 N -0.95 -60.79 13.96 21.45 0.30 -60.49 16 20 Si 0.95 45.80 27.47 68.60 1.88 47.68 16 21 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 22 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 23 H -0.25 -11.42 6.54 99.48 0.65 -10.77 16 24 O -0.39 -8.14 11.03 -148.51 -1.64 -9.77 16 25 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.06 0.72 8.12 -2.38 -0.02 0.70 16 28 H 0.08 0.67 7.86 -2.39 -0.02 0.65 16 29 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.08 0.81 7.87 -2.39 -0.02 0.79 16 32 H 0.10 1.68 8.13 -2.39 -0.02 1.66 16 33 H 0.07 1.49 8.13 -2.38 -0.02 1.47 16 34 H 0.13 2.60 8.14 -2.38 -0.02 2.58 16 35 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.06 1.93 8.10 -2.38 -0.02 1.91 16 37 H 0.06 2.02 8.10 -2.39 -0.02 2.00 16 38 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 40 H 0.02 0.74 7.20 -2.38 -0.02 0.73 16 41 H 0.02 0.75 7.57 -2.38 -0.02 0.73 16 42 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 Total: -1.00 -73.73 345.93 4.86 -68.87 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: 0.91 Total: 6.99 kcal Atomic # 6 Polarization: -29.61 SS G_CDS: 3.57 Total: -26.04 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: 0.30 Total: -60.49 kcal Atomic # 8 Polarization: -35.21 SS G_CDS: -1.80 Total: -37.01 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.88 Total: 47.68 kcal Total: -73.73 4.86 -68.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805697708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.931 kcal (2) G-P(sol) polarization free energy of solvation -73.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds