Wall clock time and date at job start Mon Mar 30 2020 00:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47207 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46852 * 179.97438 * 10 9 7 12 12 N 1.46503 * 109.46798 * 179.97438 * 11 10 9 13 13 C 1.34774 * 120.00078 * 179.97438 * 12 11 10 14 14 O 1.21582 * 119.99937 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99899 * 179.97438 * 13 12 11 16 16 C 1.46506 * 119.99518 * 179.97438 * 15 13 12 17 17 H 1.08997 * 109.53919 * 325.17042 * 16 15 13 18 18 C 1.54203 * 109.53394 * 205.00142 * 16 15 13 19 19 C 1.46289 * 111.98354 * 162.61117 * 18 16 15 20 20 C 1.54108 * 112.20585 * 61.41220 * 19 18 16 21 21 O 1.40324 * 108.70569 * 280.43799 * 20 19 18 22 22 C 1.43993 * 116.57407 * 95.04265 * 21 20 19 23 23 C 1.50620 * 109.53485 * 85.41808 * 16 15 13 24 24 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46894 * 300.00433 * 9 7 2 26 26 H 1.08998 * 109.47107 * 60.00164 * 9 7 2 27 27 H 1.08993 * 109.47110 * 300.00135 * 10 9 7 28 28 H 1.09006 * 109.46692 * 60.00091 * 10 9 7 29 29 H 1.08999 * 109.47147 * 299.99896 * 11 10 9 30 30 H 1.08998 * 109.47134 * 60.00300 * 11 10 9 31 31 H 0.97009 * 119.99709 * 0.02562 * 12 11 10 32 32 H 0.96995 * 120.00416 * 0.02562 * 15 13 12 33 33 H 1.09000 * 108.97863 * 283.24996 * 18 16 15 34 34 H 1.08992 * 108.97923 * 42.04576 * 18 16 15 35 35 H 1.09003 * 108.93179 * 182.11793 * 19 18 16 36 36 H 1.09001 * 108.93622 * 300.79769 * 19 18 16 37 37 H 1.09000 * 109.59927 * 40.20521 * 20 19 18 38 38 H 1.08996 * 109.59913 * 160.51655 * 20 19 18 39 39 H 1.08997 * 108.69482 * 78.91267 * 22 21 20 40 40 H 1.09002 * 108.68741 * 197.00753 * 22 21 20 41 41 H 1.09004 * 108.88429 * 330.97022 * 23 16 15 42 42 H 1.09000 * 108.88713 * 89.42725 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9871 0.0001 12 7 2.4324 -6.1006 -0.0005 13 6 1.9832 -7.3713 0.0004 14 8 0.7879 -7.5935 0.0013 15 7 2.8591 -8.3956 -0.0007 16 6 2.3708 -9.7769 0.0009 17 1 1.4554 -9.8392 0.5893 18 6 3.4418 -10.7017 0.6136 19 6 2.8844 -11.9925 1.0179 20 6 2.2958 -12.7718 -0.1742 21 8 1.0246 -12.2545 -0.4665 22 6 0.9590 -11.2502 -1.4964 23 6 2.0934 -10.2146 -1.4133 24 1 -0.4850 -0.8401 0.0004 25 1 0.6247 -2.5570 0.8897 26 1 0.6242 -2.5567 -0.8903 27 1 2.8720 -3.6043 -0.8904 28 1 2.8720 -3.6042 0.8895 29 1 0.8540 -5.0445 0.8903 30 1 0.8535 -5.0451 -0.8896 31 1 3.3862 -5.9232 -0.0008 32 1 3.8127 -8.2184 -0.0017 33 1 4.2279 -10.8701 -0.1224 34 1 3.8734 -10.2140 1.4875 35 1 3.6722 -12.5898 1.4768 36 1 2.0965 -11.8232 1.7519 37 1 2.9453 -12.6578 -1.0421 38 1 2.2128 -13.8274 0.0842 39 1 1.0056 -11.7424 -2.4678 40 1 0.0054 -10.7285 -1.4152 41 1 1.8182 -9.3417 -2.0053 42 1 3.0004 -10.6506 -1.8320 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183559708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:15 Heat of formation + Delta-G solvation = -103.783825 kcal Electronic energy + Delta-G solvation = -20616.516967 eV Core-core repulsion = 17402.575494 eV Total energy + Delta-G solvation = -3213.941474 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.42766 -39.18364 -36.23815 -35.26940 -33.65301 -33.46848 -31.96590 -30.69277 -27.12373 -26.34547 -25.26927 -22.94699 -21.46608 -20.99456 -20.87600 -20.41497 -18.08252 -17.16199 -17.10900 -16.71995 -15.83184 -15.45830 -15.26419 -14.52525 -14.35358 -14.15306 -13.99567 -13.74728 -13.59624 -13.35817 -12.90241 -12.71141 -11.93735 -11.85537 -11.63603 -11.59241 -11.17141 -11.01705 -10.85689 -10.78985 -10.76651 -10.22619 -10.13293 -10.00320 -9.84938 -9.77958 -9.23549 -8.67648 -8.57274 -8.33054 -6.36856 -4.06566 2.73174 3.31167 3.43026 3.47428 3.54856 3.60112 4.22058 4.29418 4.40476 4.54000 4.59799 4.73119 4.81454 4.99877 5.11107 5.16149 5.27475 5.39689 5.40409 5.55641 5.59862 5.60195 5.71187 5.75160 5.81350 5.83727 5.96632 6.07114 6.42975 6.45694 6.49956 6.71829 6.87877 7.01865 7.08866 7.36830 7.49156 8.10455 8.18942 8.45671 8.71114 8.87639 9.66154 11.04096 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.055727 B = 0.002597 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.328784 B =10778.514232 C =11031.832969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.013 3.987 3 Si 1.075 2.925 4 H -0.290 1.290 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.603 4.603 8 H 0.049 0.951 9 C 0.010 3.990 10 C -0.113 4.113 11 C 0.135 3.865 12 N -0.742 5.742 13 C 0.700 3.300 14 O -0.591 6.591 15 N -0.748 5.748 16 C 0.167 3.833 17 H 0.095 0.905 18 C -0.125 4.125 19 C -0.149 4.149 20 C 0.065 3.935 21 O -0.384 6.384 22 C 0.068 3.932 23 C -0.165 4.165 24 H 0.270 0.730 25 H 0.010 0.990 26 H 0.010 0.990 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.394 0.606 32 H 0.393 0.607 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.051 0.949 38 H 0.084 0.916 39 H 0.052 0.948 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.769 -25.419 -1.089 27.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.190 4.190 3 Si 0.904 3.096 4 H -0.216 1.216 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.641 4.641 8 H 0.068 0.932 9 C -0.027 4.027 10 C -0.151 4.151 11 C 0.011 3.989 12 N -0.397 5.397 13 C 0.399 3.601 14 O -0.469 6.469 15 N -0.404 5.404 16 C 0.062 3.938 17 H 0.113 0.887 18 C -0.163 4.163 19 C -0.188 4.188 20 C -0.013 4.013 21 O -0.303 6.303 22 C -0.009 4.009 23 C -0.204 4.204 24 H 0.081 0.919 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.227 0.773 32 H 0.227 0.773 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.070 0.930 38 H 0.102 0.898 39 H 0.070 0.930 40 H 0.111 0.889 41 H 0.101 0.899 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.281 -24.007 -0.996 25.415 hybrid contribution 1.480 -1.331 -0.197 2.000 sum 9.761 -25.338 -1.193 27.180 Atomic orbital electron populations 1.70714 1.06903 1.30783 1.46555 1.25870 0.96578 1.02798 0.93794 0.83463 0.74358 0.74825 0.76991 1.21581 1.21321 1.21333 1.22068 0.94284 0.91906 1.55885 0.93235 1.19165 0.94519 0.92656 0.96405 1.21747 0.99483 0.92832 1.01039 1.21497 0.91341 0.84244 1.01780 1.45370 1.10387 1.04471 1.79427 1.16028 0.85386 0.80748 0.77895 1.90921 1.14083 1.84072 1.57786 1.45251 1.08830 1.05059 1.81253 1.20448 0.98274 0.79218 0.95876 0.88690 1.20873 0.97955 0.95970 1.01495 1.21070 1.01556 0.96326 0.99801 1.22354 0.85339 0.97215 0.96361 1.87496 1.28998 1.55904 1.57881 1.22900 0.99531 0.88376 0.90078 1.22405 0.99329 1.00214 0.98420 0.91923 0.97143 0.97150 0.92621 0.92611 0.92023 0.92054 0.77320 0.77340 0.91697 0.91025 0.90770 0.90647 0.93021 0.89789 0.93012 0.88873 0.89895 0.91815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.28 13.65 55.43 0.76 -27.53 16 2 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 3 Si 1.08 25.41 29.90 -169.99 -5.08 20.33 16 4 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.60 -17.16 9.11 -34.44 -0.31 -17.47 16 8 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 9 C 0.01 0.26 4.28 -27.88 -0.12 0.14 16 10 C -0.11 -2.24 5.27 -26.73 -0.14 -2.38 16 11 C 0.13 2.42 5.67 -4.04 -0.02 2.40 16 12 N -0.74 -10.79 5.56 -65.22 -0.36 -11.15 16 13 C 0.70 10.66 8.38 -86.92 -0.73 9.93 16 14 O -0.59 -11.55 16.00 5.29 0.08 -11.46 16 15 N -0.75 -8.03 5.00 -59.23 -0.30 -8.33 16 16 C 0.17 1.69 2.15 -68.49 -0.15 1.54 16 17 H 0.10 1.25 7.26 -51.93 -0.38 0.88 16 18 C -0.12 -0.88 4.83 -29.29 -0.14 -1.02 16 19 C -0.15 -1.02 5.47 -29.34 -0.16 -1.18 16 20 C 0.06 0.46 6.38 37.74 0.24 0.70 16 21 O -0.38 -3.91 10.17 -33.69 -0.34 -4.25 16 22 C 0.07 0.64 6.67 37.58 0.25 0.89 16 23 C -0.16 -1.54 5.01 -27.50 -0.14 -1.68 16 24 H 0.27 8.35 7.22 -40.82 -0.29 8.05 16 25 H 0.01 0.28 8.01 -51.93 -0.42 -0.14 16 26 H 0.01 0.27 8.01 -51.93 -0.42 -0.14 16 27 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.39 4.54 8.49 -40.82 -0.35 4.19 16 32 H 0.39 3.05 8.62 -40.82 -0.35 2.70 16 33 H 0.06 0.37 7.60 -51.93 -0.39 -0.02 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 37 H 0.05 0.32 6.98 -51.93 -0.36 -0.05 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.08 0.93 7.83 -51.93 -0.41 0.52 16 42 H 0.06 0.48 6.84 -51.93 -0.35 0.12 16 LS Contribution 336.28 15.07 5.07 5.07 Total: -1.00 -34.13 336.28 -8.84 -42.98 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -7.15 Total: 2.19 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -1.52 Total: -7.84 kcal Atomic # 7 Polarization: -47.11 SS G_CDS: 0.10 Total: -47.01 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.26 Total: -15.71 kcal Atomic # 14 Polarization: 25.41 SS G_CDS: -5.08 Total: 20.33 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.13 -8.84 -42.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183559708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.808 kcal (2) G-P(sol) polarization free energy of solvation -34.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds