Wall clock time and date at job start Mon Mar 30 2020 01:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46981 * 2 1 4 4 O 1.42896 * 109.47044 * 120.00033 * 2 1 3 5 5 C 1.53003 * 109.46878 * 239.99904 * 2 1 3 6 6 C 1.50692 * 109.47151 * 179.48450 * 5 2 1 7 7 O 1.21285 * 119.99824 * 5.64946 * 6 5 2 8 8 N 1.34776 * 120.00424 * 185.65262 * 6 5 2 9 9 C 1.47084 * 120.87583 * 359.71789 * 8 6 5 10 10 C 1.53701 * 108.27312 * 128.76147 * 9 8 6 11 11 N 1.46896 * 109.25941 * 54.07686 * 10 9 8 12 12 C 1.46902 * 111.00105 * 172.60820 * 11 10 9 13 13 C 1.50701 * 109.46946 * 294.30392 * 12 11 10 14 14 H 1.07995 * 120.00140 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99655 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99911 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 120.00064 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47198 * 89.99659 * 17 15 13 19 19 H 1.48502 * 109.46990 * 209.99499 * 17 15 13 20 20 H 1.48495 * 109.46987 * 329.99572 * 17 15 13 21 21 C 1.46898 * 111.27313 * 296.76192 * 11 10 9 22 22 C 1.47075 * 120.88300 * 180.02562 * 8 6 5 23 23 H 1.09003 * 109.46677 * 304.92896 * 1 2 3 24 24 H 1.08996 * 109.47410 * 64.92915 * 1 2 3 25 25 H 1.09003 * 109.47058 * 184.93578 * 1 2 3 26 26 H 1.08998 * 109.47064 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.46905 * 300.00480 * 3 2 1 28 28 H 1.09001 * 109.47075 * 60.00057 * 3 2 1 29 29 H 0.96699 * 113.99509 * 179.97438 * 4 2 1 30 30 H 1.08995 * 109.47096 * 299.48938 * 5 2 1 31 31 H 1.09004 * 109.46662 * 59.48459 * 5 2 1 32 32 H 1.08997 * 109.62796 * 248.52336 * 9 8 6 33 33 H 1.08996 * 109.62808 * 9.10966 * 9 8 6 34 34 H 1.09007 * 109.64192 * 294.08014 * 10 9 8 35 35 H 1.08992 * 109.42298 * 173.94756 * 10 9 8 36 36 H 1.08999 * 109.47028 * 54.30531 * 12 11 10 37 37 H 1.09002 * 109.46922 * 174.30681 * 12 11 10 38 38 H 0.96993 * 120.00188 * 180.02562 * 16 15 13 39 39 H 1.08996 * 109.48845 * 303.13993 * 21 11 10 40 40 H 1.09001 * 109.49349 * 183.06424 * 21 11 10 41 41 H 1.08999 * 109.63308 * 350.89211 * 22 8 6 42 42 H 1.09002 * 109.62911 * 111.47430 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.0400 -0.7213 -1.2493 6 6 3.5469 -0.7103 -1.2557 7 8 4.1542 -0.2699 -0.3027 8 7 4.2198 -1.1897 -2.3205 9 6 3.5030 -1.7339 -3.4839 10 6 4.0515 -1.0546 -4.7489 11 7 5.5114 -1.2129 -4.7896 12 6 6.0576 -0.7327 -6.0660 13 6 5.5629 -1.6110 -7.1862 14 1 4.9079 -2.4424 -6.9715 15 6 5.9457 -1.3525 -8.4853 16 7 5.5136 -2.1186 -9.4630 17 14 7.0780 0.0860 -8.8566 18 1 8.4908 -0.3668 -8.7931 19 1 6.7861 0.6077 -10.2160 20 1 6.8573 1.1608 -7.8560 21 6 6.1527 -0.5360 -3.6545 22 6 5.6903 -1.1888 -2.3471 23 1 -0.3633 0.5884 0.8426 24 1 -0.3634 0.4354 -0.9308 25 1 -0.3633 -1.0239 0.0884 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 2.9703 -0.7121 1.2326 30 1 1.6842 -1.7515 -1.2447 31 1 1.6691 -0.2128 -2.1392 32 1 3.6649 -2.8101 -3.5431 33 1 2.4375 -1.5257 -3.3876 34 1 3.8010 0.0062 -4.7331 35 1 3.6105 -1.5198 -5.6303 36 1 5.7318 0.2932 -6.2376 37 1 7.1465 -0.7672 -6.0311 38 1 5.7831 -1.9370 -10.3769 39 1 5.8730 0.5175 -3.6541 40 1 7.2355 -0.6251 -3.7425 41 1 6.0716 -0.6202 -1.4990 42 1 6.0580 -2.2139 -2.2994 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602205376.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:08 Heat of formation + Delta-G solvation = -103.383061 kcal Electronic energy + Delta-G solvation = -21743.670122 eV Core-core repulsion = 18529.746027 eV Total energy + Delta-G solvation = -3213.924095 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.58081 -39.58729 -38.05509 -35.99392 -34.47795 -33.68190 -32.28933 -30.64868 -29.30888 -28.19306 -27.03770 -24.71227 -23.54196 -22.26826 -21.26791 -19.93040 -18.94674 -18.34961 -17.58514 -16.90546 -16.74268 -16.53836 -16.05983 -15.82556 -15.53707 -15.32316 -15.17669 -14.68357 -14.45433 -14.13897 -13.68890 -13.44237 -13.24569 -13.05764 -13.02761 -12.89492 -12.78147 -12.54404 -12.46587 -12.36074 -12.21438 -11.98415 -11.84777 -11.74904 -11.42297 -10.91687 -10.77834 -10.69625 -9.78894 -9.07358 -8.28129 -6.31204 1.35118 1.36268 1.45732 1.51506 1.92475 2.33863 3.04405 3.13974 3.34798 3.42027 3.71055 3.94341 4.01287 4.07504 4.16995 4.23754 4.27432 4.39018 4.49569 4.56908 4.62673 4.71769 4.76682 4.79741 4.84935 4.92079 4.92164 5.03008 5.04475 5.06976 5.11942 5.27165 5.38966 5.45163 5.52236 5.91832 6.27728 6.36706 6.59275 6.75199 6.76036 7.11693 7.32639 8.87787 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.034881 B = 0.003959 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.548020 B = 7070.015255 C = 7297.207830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.138 3.862 3 C -0.186 4.186 4 O -0.583 6.583 5 C -0.167 4.167 6 C 0.516 3.484 7 O -0.575 6.575 8 N -0.608 5.608 9 C 0.118 3.882 10 C 0.049 3.951 11 N -0.540 5.540 12 C 0.171 3.829 13 C -0.514 4.514 14 H 0.046 0.954 15 C 0.013 3.987 16 N -0.945 5.945 17 Si 0.942 3.058 18 H -0.267 1.267 19 H -0.283 1.283 20 H -0.255 1.255 21 C 0.042 3.958 22 C 0.123 3.877 23 H 0.062 0.938 24 H 0.091 0.909 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.383 0.617 30 H 0.118 0.882 31 H 0.123 0.877 32 H 0.080 0.920 33 H 0.119 0.881 34 H 0.026 0.974 35 H 0.078 0.922 36 H -0.015 1.015 37 H 0.028 0.972 38 H 0.267 0.733 39 H 0.024 0.976 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.660 5.253 16.638 19.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.097 3.903 3 C -0.243 4.243 4 O -0.394 6.394 5 C -0.207 4.207 6 C 0.307 3.693 7 O -0.458 6.458 8 N -0.340 5.340 9 C -0.004 4.004 10 C -0.080 4.080 11 N -0.265 5.265 12 C 0.044 3.956 13 C -0.552 4.552 14 H 0.064 0.936 15 C -0.185 4.185 16 N -0.585 5.585 17 Si 0.766 3.234 18 H -0.192 1.192 19 H -0.209 1.209 20 H -0.179 1.179 21 C -0.087 4.087 22 C 0.000 4.000 23 H 0.081 0.919 24 H 0.110 0.890 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.236 0.764 30 H 0.136 0.864 31 H 0.141 0.859 32 H 0.099 0.901 33 H 0.137 0.863 34 H 0.044 0.956 35 H 0.096 0.904 36 H 0.003 0.997 37 H 0.046 0.954 38 H 0.076 0.924 39 H 0.042 0.958 40 H 0.107 0.893 41 H 0.113 0.887 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.853 4.893 17.083 19.428 hybrid contribution 1.197 1.256 -1.095 2.052 sum -6.656 6.149 15.988 18.377 Atomic orbital electron populations 1.21805 0.90771 1.03317 1.03600 1.21066 0.95409 0.90594 0.83184 1.22632 1.02581 0.96451 1.02647 1.86380 1.28975 1.79495 1.44587 1.22578 0.90382 1.05516 1.02187 1.21124 0.91104 0.75720 0.81317 1.90493 1.71079 1.48660 1.35527 1.48333 1.07314 1.60515 1.17858 1.22111 0.97281 0.98710 0.82330 1.22445 0.88521 0.98289 0.98715 1.61803 1.04859 1.57437 1.02359 1.19938 0.95251 0.92998 0.87372 1.21219 1.29631 1.13502 0.90865 0.93553 1.25751 0.97664 0.99057 0.96054 1.70026 1.47050 1.40870 1.00569 0.85800 0.79648 0.80127 0.77846 1.19174 1.20879 1.17904 1.22502 1.00158 0.95201 0.90868 1.21653 0.79563 1.01905 0.96882 0.91853 0.89017 0.91498 0.92161 0.90989 0.92102 0.76386 0.86378 0.85915 0.90149 0.86297 0.95584 0.90356 0.99732 0.95351 0.92439 0.95788 0.89309 0.88745 0.90409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 8.84 71.98 0.64 -1.38 16 2 C 0.14 2.68 1.11 -10.79 -0.01 2.67 16 3 C -0.19 -3.74 8.49 71.98 0.61 -3.13 16 4 O -0.58 -14.43 12.95 -130.60 -1.69 -16.12 16 5 C -0.17 -2.92 3.44 29.85 0.10 -2.82 16 6 C 0.52 12.41 7.17 87.65 0.63 13.04 16 7 O -0.58 -16.43 11.21 15.34 0.17 -16.25 16 8 N -0.61 -15.24 3.00 -816.98 -2.45 -17.70 16 9 C 0.12 2.84 6.54 86.50 0.57 3.40 16 10 C 0.05 1.62 5.47 86.54 0.47 2.10 16 11 N -0.54 -20.46 4.62 -898.80 -4.15 -24.61 16 12 C 0.17 7.79 3.79 85.56 0.32 8.11 16 13 C -0.51 -28.11 8.96 25.60 0.23 -27.88 16 14 H 0.05 2.79 7.37 -2.91 -0.02 2.77 16 15 C 0.01 0.70 5.47 84.65 0.46 1.16 16 16 N -0.94 -56.95 13.96 21.45 0.30 -56.65 16 17 Si 0.94 42.63 27.47 68.60 1.88 44.52 16 18 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 20 H -0.26 -10.88 6.54 99.48 0.65 -10.23 16 21 C 0.04 1.28 5.62 86.40 0.49 1.77 16 22 C 0.12 3.28 6.60 86.36 0.57 3.85 16 23 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.06 1.50 5.68 -2.39 -0.01 1.49 16 27 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.38 9.82 6.39 -74.06 -0.47 9.35 16 30 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.12 1.65 7.38 -2.39 -0.02 1.63 16 32 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.12 2.00 5.95 -2.39 -0.01 1.98 16 34 H 0.03 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.08 2.99 6.67 -2.39 -0.02 2.97 16 36 H -0.01 -0.69 7.18 -2.39 -0.02 -0.71 16 37 H 0.03 1.28 7.40 -2.39 -0.02 1.26 16 38 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 39 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.09 2.60 7.99 -2.39 -0.02 2.58 16 41 H 0.09 2.46 7.06 -2.39 -0.02 2.45 16 42 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -66.15 324.27 -0.39 -66.54 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 0.47 Total: 19.39 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: 5.08 Total: 0.89 kcal Atomic # 7 Polarization: -92.65 SS G_CDS: -6.31 Total: -98.96 kcal Atomic # 8 Polarization: -30.85 SS G_CDS: -1.52 Total: -32.37 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 1.88 Total: 44.52 kcal Total: -66.15 -0.39 -66.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602205376.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.846 kcal (2) G-P(sol) polarization free energy of solvation -66.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds