Wall clock time and date at job start Mon Mar 30 2020 01:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.46941 * 2 1 4 4 C 1.53006 * 109.47258 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.53883 * 304.88870 * 4 3 2 6 6 C 1.53093 * 109.50745 * 184.78285 * 4 3 2 7 7 N 1.47015 * 109.26056 * 183.21593 * 6 4 3 8 8 C 1.46901 * 111.00294 * 182.39421 * 7 6 4 9 9 C 1.50699 * 109.47100 * 170.31730 * 8 7 6 10 10 O 1.21283 * 119.99845 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99783 * 179.97438 * 9 8 7 12 12 C 1.46496 * 119.99599 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.46955 * 180.02562 * 12 11 9 14 14 H 1.08002 * 119.99728 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00435 * 179.97438 * 13 12 11 16 16 N 1.31522 * 119.99766 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00338 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.46997 * 60.00662 * 17 15 13 19 19 H 1.48501 * 109.47228 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46982 * 300.00265 * 17 15 13 21 21 C 1.47015 * 110.75017 * 58.61185 * 7 6 4 22 22 C 1.53094 * 109.26042 * 301.38578 * 21 7 6 23 23 O 1.43015 * 109.50666 * 64.99818 * 4 3 2 24 24 H 1.08999 * 109.46954 * 60.00812 * 1 2 3 25 25 H 1.09007 * 109.46729 * 180.02562 * 1 2 3 26 26 H 1.08991 * 109.47391 * 300.00046 * 1 2 3 27 27 H 1.09001 * 109.47391 * 239.99991 * 2 1 3 28 28 H 1.09004 * 109.47511 * 119.99652 * 2 1 3 29 29 H 1.09001 * 109.47610 * 59.99826 * 3 2 1 30 30 H 1.09000 * 109.47318 * 299.99693 * 3 2 1 31 31 H 1.09004 * 109.50414 * 303.14842 * 6 4 3 32 32 H 1.08999 * 109.51106 * 63.27454 * 6 4 3 33 33 H 1.09000 * 109.46487 * 290.31544 * 8 7 6 34 34 H 1.08994 * 109.47256 * 50.31098 * 8 7 6 35 35 H 0.97001 * 119.99878 * 0.02562 * 11 9 8 36 36 H 1.09000 * 109.47424 * 300.00012 * 12 11 9 37 37 H 1.08994 * 109.47641 * 60.00376 * 12 11 9 38 38 H 0.96998 * 120.00009 * 179.97438 * 16 15 13 39 39 H 1.09003 * 109.50470 * 181.44930 * 21 7 6 40 40 H 1.09000 * 109.50644 * 61.32257 * 21 7 6 41 41 H 1.09004 * 109.50690 * 296.91866 * 22 21 7 42 42 H 1.08993 * 109.51048 * 176.78374 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9350 0.8549 0.8418 6 6 4.0812 2.8806 0.1197 7 7 5.5493 2.8816 0.0410 8 6 6.0846 4.2392 0.2094 9 6 7.5825 4.1732 0.3612 10 8 8.1483 3.1008 0.3325 11 7 8.2933 5.3059 0.5290 12 6 9.7494 5.2417 0.6771 13 6 10.2986 6.6344 0.8498 14 1 9.6299 7.4824 0.8496 15 6 11.6547 6.8259 1.0090 16 7 12.4690 5.7931 1.0097 17 14 12.3355 8.5522 1.2223 18 1 11.7411 9.1726 2.4335 19 1 13.8115 8.4872 1.3726 20 1 11.9954 9.3693 0.0299 21 6 6.0034 2.2894 -1.2257 22 6 5.4729 0.8573 -1.3325 23 8 4.0471 0.8730 -1.2227 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 3.6728 3.4812 -0.6931 32 1 3.7676 3.2996 1.0758 33 1 5.8341 4.8395 -0.6652 34 1 5.6489 4.6938 1.0990 35 1 7.8407 6.1635 0.5524 36 1 9.9995 4.6418 1.5522 37 1 10.1854 4.7865 -0.2121 38 1 13.4231 5.9278 1.1213 39 1 7.0930 2.2769 -1.2515 40 1 5.6257 2.8806 -2.0599 41 1 5.8932 0.2526 -0.5288 42 1 5.7591 0.4339 -2.2952 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759423549.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:50 Heat of formation + Delta-G solvation = -93.510875 kcal Electronic energy + Delta-G solvation = -20819.092687 eV Core-core repulsion = 17605.596682 eV Total energy + Delta-G solvation = -3213.496005 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.96300 -38.58191 -35.71170 -34.95854 -34.11718 -32.34736 -31.36025 -29.46216 -27.62474 -26.60483 -24.47191 -23.21966 -22.28222 -21.18320 -20.38297 -19.65989 -17.19900 -16.62055 -16.33082 -15.77510 -15.42676 -15.16106 -15.02229 -14.69987 -14.49459 -14.22554 -14.02652 -13.53527 -13.30275 -12.95033 -12.60982 -12.34480 -12.24316 -11.96266 -11.82158 -11.57115 -11.27925 -11.14256 -11.08600 -10.99896 -10.87534 -10.83616 -10.41816 -10.32223 -9.72267 -9.42578 -8.97521 -8.74105 -8.29047 -7.87653 -6.17802 -4.24981 3.24097 3.28871 3.30284 3.35163 3.54404 3.71716 4.21890 4.39884 4.52126 4.77968 4.85681 4.99837 5.03115 5.09247 5.17903 5.19439 5.27312 5.34839 5.43723 5.47824 5.52584 5.54574 5.57016 5.60636 5.65926 5.78123 5.90657 5.93431 6.03493 6.11468 6.15171 6.87634 6.97346 7.18539 7.30539 7.43185 7.50639 7.65783 7.95890 8.61592 8.77276 9.10149 9.41731 10.92311 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.055401 B = 0.002895 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.283079 B = 9670.464935 C = 9974.884438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.110 4.110 4 C 0.094 3.906 5 H 0.067 0.933 6 C 0.023 3.977 7 N -0.518 5.518 8 C 0.035 3.965 9 C 0.499 3.501 10 O -0.540 6.540 11 N -0.714 5.714 12 C 0.252 3.748 13 C -0.544 4.544 14 H 0.062 0.938 15 C 0.063 3.937 16 N -0.885 5.885 17 Si 0.904 3.096 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.275 1.275 21 C 0.013 3.987 22 C 0.068 3.932 23 O -0.384 6.384 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.041 0.959 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.099 0.901 35 H 0.390 0.610 36 H 0.027 0.973 37 H 0.026 0.974 38 H 0.267 0.733 39 H 0.110 0.890 40 H 0.034 0.966 41 H 0.061 0.939 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.242 -6.783 -2.813 22.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.148 4.148 4 C 0.036 3.964 5 H 0.085 0.915 6 C -0.105 4.105 7 N -0.243 5.243 8 C -0.096 4.096 9 C 0.283 3.717 10 O -0.418 6.418 11 N -0.364 5.364 12 C 0.131 3.869 13 C -0.583 4.583 14 H 0.080 0.920 15 C -0.140 4.140 16 N -0.523 5.523 17 Si 0.731 3.269 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.201 1.201 21 C -0.115 4.115 22 C -0.009 4.009 23 O -0.303 6.303 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.059 0.941 32 H 0.102 0.898 33 H 0.076 0.924 34 H 0.118 0.882 35 H 0.222 0.778 36 H 0.045 0.955 37 H 0.044 0.956 38 H 0.076 0.924 39 H 0.128 0.872 40 H 0.053 0.947 41 H 0.079 0.921 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -20.530 -7.968 -2.573 22.172 hybrid contribution 0.210 2.107 -0.287 2.137 sum -20.320 -5.861 -2.859 21.341 Atomic orbital electron populations 1.21780 0.96030 1.01519 1.01624 1.21463 0.95404 0.96449 1.02613 1.21616 0.92600 0.97926 1.02684 1.22161 0.94039 0.92407 0.87763 0.91480 1.22832 0.88039 0.97809 1.01809 1.61836 1.07642 1.19475 1.35305 1.22032 0.94721 0.90351 1.02499 1.20265 0.88440 0.84986 0.78002 1.90619 1.71871 1.28683 1.50592 1.46460 1.10836 1.07500 1.71554 1.19080 0.73005 0.97404 0.97417 1.21190 0.92743 0.92070 1.52262 0.91979 1.24958 0.96743 0.97562 0.94779 1.69967 1.03997 1.29909 1.48389 0.86466 0.77908 0.83740 0.78742 1.20057 1.21058 1.20087 1.22985 1.03731 0.95658 0.89129 1.22632 0.80268 0.95693 1.02304 1.87935 1.21516 1.82049 1.38844 0.92818 0.92845 0.92897 0.91184 0.92118 0.90561 0.91237 0.94118 0.89771 0.92368 0.88243 0.77809 0.95525 0.95618 0.92375 0.87189 0.94740 0.92058 0.88553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.16 0.37 -0.68 16 2 C -0.12 -1.01 5.83 -26.73 -0.16 -1.16 16 3 C -0.11 -0.95 4.93 -26.73 -0.13 -1.08 16 4 C 0.09 1.05 2.81 -26.68 -0.07 0.97 16 5 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 6 C 0.02 0.27 4.93 -3.71 -0.02 0.25 16 7 N -0.52 -7.56 4.47 -235.75 -1.05 -8.61 16 8 C 0.04 0.51 5.45 -4.98 -0.03 0.48 16 9 C 0.50 9.86 7.54 -10.99 -0.08 9.77 16 10 O -0.54 -12.75 14.32 5.55 0.08 -12.67 16 11 N -0.71 -14.88 5.55 -61.48 -0.34 -15.22 16 12 C 0.25 6.64 5.43 -5.19 -0.03 6.62 16 13 C -0.54 -14.71 9.28 -34.44 -0.32 -15.03 16 14 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 15 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 16 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 17 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 18 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 19 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 21 C 0.01 0.19 5.29 -3.71 -0.02 0.17 16 22 C 0.07 0.87 7.01 37.21 0.26 1.13 16 23 O -0.38 -4.90 10.01 -35.23 -0.35 -5.25 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.66 7.82 -51.93 -0.41 0.25 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.83 8.09 -51.93 -0.42 0.41 16 33 H 0.06 0.75 8.12 -51.93 -0.42 0.33 16 34 H 0.10 1.22 8.04 -51.93 -0.42 0.81 16 35 H 0.39 6.89 8.32 -40.82 -0.34 6.55 16 36 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.11 1.91 5.85 -51.93 -0.30 1.61 16 40 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 340.34 15.07 5.13 5.13 Total: -1.00 -31.84 340.34 -8.49 -40.32 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -7.34 Total: 2.77 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -0.33 Total: 3.10 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: -0.66 Total: -49.16 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.27 Total: -17.93 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.84 -8.49 -40.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759423549.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.187 kcal (2) G-P(sol) polarization free energy of solvation -31.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds