Wall clock time and date at job start Mon Mar 30 2020 01:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.46941 * 2 1 4 4 C 1.53006 * 109.47258 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.53883 * 304.88870 * 4 3 2 6 6 C 1.53093 * 109.50745 * 184.78285 * 4 3 2 7 7 N 1.47015 * 109.26056 * 183.21593 * 6 4 3 8 8 C 1.46901 * 111.00294 * 182.39421 * 7 6 4 9 9 C 1.50699 * 109.47100 * 170.31730 * 8 7 6 10 10 O 1.21283 * 119.99845 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99783 * 179.97438 * 9 8 7 12 12 C 1.46496 * 119.99599 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.46955 * 180.02562 * 12 11 9 14 14 H 1.08002 * 119.99728 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00435 * 179.97438 * 13 12 11 16 16 N 1.31522 * 119.99766 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00338 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.46997 * 60.00662 * 17 15 13 19 19 H 1.48501 * 109.47228 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46982 * 300.00265 * 17 15 13 21 21 C 1.47015 * 110.75017 * 58.61185 * 7 6 4 22 22 C 1.53094 * 109.26042 * 301.38578 * 21 7 6 23 23 O 1.43015 * 109.50666 * 64.99818 * 4 3 2 24 24 H 1.08999 * 109.46954 * 60.00812 * 1 2 3 25 25 H 1.09007 * 109.46729 * 180.02562 * 1 2 3 26 26 H 1.08991 * 109.47391 * 300.00046 * 1 2 3 27 27 H 1.09001 * 109.47391 * 239.99991 * 2 1 3 28 28 H 1.09004 * 109.47511 * 119.99652 * 2 1 3 29 29 H 1.09001 * 109.47610 * 59.99826 * 3 2 1 30 30 H 1.09000 * 109.47318 * 299.99693 * 3 2 1 31 31 H 1.09004 * 109.50414 * 303.14842 * 6 4 3 32 32 H 1.08999 * 109.51106 * 63.27454 * 6 4 3 33 33 H 1.09000 * 109.46487 * 290.31544 * 8 7 6 34 34 H 1.08994 * 109.47256 * 50.31098 * 8 7 6 35 35 H 0.97001 * 119.99878 * 0.02562 * 11 9 8 36 36 H 1.09000 * 109.47424 * 300.00012 * 12 11 9 37 37 H 1.08994 * 109.47641 * 60.00376 * 12 11 9 38 38 H 0.96998 * 120.00009 * 179.97438 * 16 15 13 39 39 H 1.09003 * 109.50470 * 181.44930 * 21 7 6 40 40 H 1.09000 * 109.50644 * 61.32257 * 21 7 6 41 41 H 1.09004 * 109.50690 * 296.91866 * 22 21 7 42 42 H 1.08993 * 109.51048 * 176.78374 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9350 0.8549 0.8418 6 6 4.0812 2.8806 0.1197 7 7 5.5493 2.8816 0.0410 8 6 6.0846 4.2392 0.2094 9 6 7.5825 4.1732 0.3612 10 8 8.1483 3.1008 0.3325 11 7 8.2933 5.3059 0.5290 12 6 9.7494 5.2417 0.6771 13 6 10.2986 6.6344 0.8498 14 1 9.6299 7.4824 0.8496 15 6 11.6547 6.8259 1.0090 16 7 12.4690 5.7931 1.0097 17 14 12.3355 8.5522 1.2223 18 1 11.7411 9.1726 2.4335 19 1 13.8115 8.4872 1.3726 20 1 11.9954 9.3693 0.0299 21 6 6.0034 2.2894 -1.2257 22 6 5.4729 0.8573 -1.3325 23 8 4.0471 0.8730 -1.2227 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 3.6728 3.4812 -0.6931 32 1 3.7676 3.2996 1.0758 33 1 5.8341 4.8395 -0.6652 34 1 5.6489 4.6938 1.0990 35 1 7.8407 6.1635 0.5524 36 1 9.9995 4.6418 1.5522 37 1 10.1854 4.7865 -0.2121 38 1 13.4231 5.9278 1.1213 39 1 7.0930 2.2769 -1.2515 40 1 5.6257 2.8806 -2.0599 41 1 5.8932 0.2526 -0.5288 42 1 5.7591 0.4339 -2.2952 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759423549.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:50 Heat of formation + Delta-G solvation = -117.304368 kcal Electronic energy + Delta-G solvation = -20820.124450 eV Core-core repulsion = 17605.596682 eV Total energy + Delta-G solvation = -3214.527768 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.14088 -40.02286 -36.82728 -36.00633 -35.75774 -34.35150 -32.20394 -30.81988 -29.15092 -27.78758 -25.71216 -24.49046 -23.79381 -21.93100 -21.42410 -21.28251 -18.96072 -17.71813 -17.48247 -17.38258 -16.85273 -16.66593 -16.14128 -15.93557 -15.62903 -15.40142 -15.36583 -14.71282 -14.37877 -14.19455 -13.98918 -13.81876 -13.66833 -13.06742 -12.94850 -12.87359 -12.71399 -12.50114 -12.33539 -12.22812 -11.98724 -11.87299 -11.52015 -11.51186 -11.32282 -10.89066 -10.79315 -10.42585 -9.81752 -9.38028 -8.29445 -6.46276 1.42745 1.46846 1.55031 1.77459 2.22720 2.42498 2.78158 2.96944 3.05226 3.69544 3.87787 3.96404 4.10505 4.14236 4.15985 4.27056 4.28748 4.34050 4.40976 4.52616 4.62033 4.70723 4.78219 4.84553 4.87609 4.97941 5.01838 5.10664 5.12505 5.24048 5.31088 5.40488 5.48406 5.52330 5.68095 5.80667 5.85297 5.95912 6.22256 6.64764 6.93732 7.23298 7.51867 8.82461 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.055401 B = 0.002895 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.283079 B = 9670.464935 C = 9974.884438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.103 4.103 4 C 0.089 3.911 5 H 0.057 0.943 6 C 0.026 3.974 7 N -0.540 5.540 8 C 0.049 3.951 9 C 0.494 3.506 10 O -0.584 6.584 11 N -0.709 5.709 12 C 0.269 3.731 13 C -0.557 4.557 14 H 0.084 0.916 15 C 0.002 3.998 16 N -0.931 5.931 17 Si 0.985 3.015 18 H -0.261 1.261 19 H -0.286 1.286 20 H -0.262 1.262 21 C 0.016 3.984 22 C 0.073 3.927 23 O -0.391 6.391 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.096 0.904 30 H 0.071 0.929 31 H 0.051 0.949 32 H 0.106 0.894 33 H 0.085 0.915 34 H 0.132 0.868 35 H 0.408 0.592 36 H -0.014 1.014 37 H -0.014 1.014 38 H 0.269 0.731 39 H 0.075 0.925 40 H 0.043 0.957 41 H 0.048 0.952 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.673 -4.688 -2.597 24.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.141 4.141 4 C 0.031 3.969 5 H 0.075 0.925 6 C -0.101 4.101 7 N -0.266 5.266 8 C -0.081 4.081 9 C 0.281 3.719 10 O -0.465 6.465 11 N -0.360 5.360 12 C 0.146 3.854 13 C -0.594 4.594 14 H 0.102 0.898 15 C -0.197 4.197 16 N -0.570 5.570 17 Si 0.808 3.192 18 H -0.186 1.186 19 H -0.212 1.212 20 H -0.186 1.186 21 C -0.112 4.112 22 C -0.004 4.004 23 O -0.310 6.310 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.115 0.885 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.124 0.876 33 H 0.103 0.897 34 H 0.149 0.851 35 H 0.244 0.756 36 H 0.003 0.997 37 H 0.004 0.996 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -23.028 -5.854 -2.361 23.878 hybrid contribution 0.935 1.354 -0.352 1.683 sum -22.093 -4.501 -2.713 22.709 Atomic orbital electron populations 1.21754 0.94767 1.01967 1.02167 1.21446 0.96490 0.96208 1.01794 1.21612 0.90509 0.98246 1.03728 1.22348 0.95651 0.92091 0.86770 0.92519 1.22922 0.85649 0.98162 1.03359 1.61788 1.09866 1.19569 1.35328 1.21966 0.89929 0.91158 1.05072 1.21310 0.90851 0.83652 0.76068 1.90608 1.73419 1.30367 1.52091 1.46186 1.08688 1.09154 1.71989 1.18491 0.76381 0.96756 0.93758 1.21599 0.93474 0.92538 1.51828 0.89759 1.26088 0.97186 1.02400 0.94057 1.70137 1.04420 1.32865 1.49557 0.85199 0.76785 0.77720 0.79467 1.18595 1.21178 1.18645 1.22850 1.01655 0.96955 0.89736 1.22575 0.80560 0.94558 1.02740 1.87939 1.20984 1.82285 1.39768 0.92617 0.92534 0.91968 0.92758 0.92267 0.88526 0.91048 0.93073 0.87614 0.89745 0.85056 0.75609 0.99651 0.99614 0.92267 0.90670 0.93928 0.93363 0.86984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.91 71.98 0.71 -1.02 16 2 C -0.12 -1.82 5.83 30.59 0.18 -1.64 16 3 C -0.10 -1.52 4.93 30.59 0.15 -1.37 16 4 C 0.09 1.82 2.81 30.63 0.09 1.91 16 5 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 6 C 0.03 0.53 4.93 86.31 0.43 0.96 16 7 N -0.54 -15.00 4.47 -899.79 -4.02 -19.02 16 8 C 0.05 1.32 5.45 85.56 0.47 1.79 16 9 C 0.49 19.61 7.54 87.66 0.66 20.27 16 10 O -0.58 -28.84 14.32 -3.04 -0.04 -28.88 16 11 N -0.71 -29.64 5.55 -466.80 -2.59 -32.23 16 12 C 0.27 14.79 5.43 85.63 0.46 15.25 16 13 C -0.56 -30.19 9.28 25.60 0.24 -29.95 16 14 H 0.08 4.09 7.60 -2.91 -0.02 4.07 16 15 C 0.00 0.13 5.46 84.65 0.46 0.59 16 16 N -0.93 -56.37 13.29 21.45 0.28 -56.09 16 17 Si 0.99 42.16 29.54 68.60 2.03 44.19 16 18 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 19 H -0.29 -12.20 7.11 99.48 0.71 -11.49 16 20 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 21 C 0.02 0.47 5.29 86.31 0.46 0.93 16 22 C 0.07 1.86 7.01 72.01 0.50 2.37 16 23 O -0.39 -9.56 10.01 -148.98 -1.49 -11.06 16 24 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 26 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.05 0.98 7.82 -2.39 -0.02 0.96 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.11 1.68 8.09 -2.39 -0.02 1.66 16 33 H 0.08 1.88 8.12 -2.39 -0.02 1.86 16 34 H 0.13 2.72 8.04 -2.39 -0.02 2.70 16 35 H 0.41 13.82 8.32 -92.71 -0.77 13.05 16 36 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 37 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 38 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 39 H 0.07 2.73 5.85 -2.39 -0.01 2.72 16 40 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 42 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -71.99 340.34 -0.81 -72.80 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: 0.21 Total: 20.22 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: 4.81 Total: 10.07 kcal Atomic # 7 Polarization: -101.01 SS G_CDS: -6.32 Total: -107.33 kcal Atomic # 8 Polarization: -38.40 SS G_CDS: -1.53 Total: -39.94 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -71.99 -0.81 -72.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759423549.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.508 kcal (2) G-P(sol) polarization free energy of solvation -71.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds