Wall clock time and date at job start Mon Mar 30 2020 01:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47100 * 2 1 4 4 C 1.53007 * 109.46816 * 60.00326 * 3 2 1 5 5 C 1.52998 * 109.47194 * 300.00496 * 3 2 1 6 6 C 1.50702 * 109.46983 * 179.97438 * 3 2 1 7 7 O 1.21280 * 120.00276 * 0.02562 * 6 3 2 8 8 N 1.34775 * 119.99630 * 179.97438 * 6 3 2 9 9 C 1.46500 * 119.99838 * 180.02562 * 8 6 3 10 10 H 1.09002 * 110.88469 * 31.12619 * 9 8 6 11 11 C 1.55134 * 111.19437 * 267.19223 * 9 8 6 12 12 N 1.47425 * 104.72157 * 279.19206 * 11 9 8 13 13 C 1.36933 * 125.64812 * 155.81472 * 12 11 9 14 14 H 1.08000 * 120.00253 * 349.39183 * 13 12 11 15 15 C 1.38813 * 119.99762 * 169.39090 * 13 12 11 16 16 N 1.31622 * 119.99962 * 152.99773 * 15 13 12 17 17 Si 1.86797 * 120.00318 * 332.99342 * 15 13 12 18 18 H 1.48512 * 109.46853 * 85.20366 * 17 15 13 19 19 H 1.48500 * 109.47114 * 325.21006 * 17 15 13 20 20 H 1.48500 * 109.47381 * 205.20213 * 17 15 13 21 21 C 1.47024 * 108.70346 * 335.55181 * 12 11 9 22 22 C 1.54322 * 107.27070 * 1.28801 * 21 12 11 23 23 H 1.08998 * 110.72271 * 263.65456 * 22 21 12 24 24 O 1.42901 * 110.72187 * 140.55797 * 22 21 12 25 25 H 1.09000 * 109.47063 * 59.99887 * 1 2 3 26 26 H 1.08997 * 109.47014 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46789 * 299.99491 * 1 2 3 28 28 H 1.09003 * 109.47314 * 240.00498 * 2 1 3 29 29 H 1.09000 * 109.47063 * 120.00113 * 2 1 3 30 30 H 1.08997 * 109.46898 * 180.02562 * 4 3 2 31 31 H 1.08999 * 109.46991 * 299.99484 * 4 3 2 32 32 H 1.09000 * 109.46961 * 59.99709 * 4 3 2 33 33 H 1.08999 * 109.46581 * 299.99633 * 5 3 2 34 34 H 1.09000 * 109.47198 * 59.99759 * 5 3 2 35 35 H 1.08997 * 109.47198 * 179.97438 * 5 3 2 36 36 H 0.97005 * 120.00053 * 0.02562 * 8 6 3 37 37 H 1.08998 * 110.49537 * 160.35225 * 11 9 8 38 38 H 1.09000 * 110.33823 * 37.95299 * 11 9 8 39 39 H 0.97002 * 120.00152 * 5.05294 * 16 15 13 40 40 H 1.09007 * 109.88407 * 120.70344 * 21 12 11 41 41 H 1.09002 * 109.88260 * 241.86932 * 21 12 11 42 42 H 0.96695 * 114.00057 * 61.45129 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2494 5 6 1.5299 2.1638 -1.2492 6 6 3.5470 1.4425 0.0006 7 8 4.1535 0.3922 0.0006 8 7 4.2209 2.6097 0.0002 9 6 5.6859 2.6097 0.0003 10 1 6.0745 1.7378 -0.5258 11 6 6.2467 2.6811 1.4449 12 7 6.1697 4.1083 1.8066 13 6 6.1018 4.6062 3.0803 14 1 5.9295 3.9395 3.9123 15 6 6.2545 5.9680 3.3022 16 7 5.6936 6.5307 4.3516 17 14 7.2560 7.0018 2.1116 18 1 6.3928 7.4316 0.9821 19 1 8.3897 6.1971 1.5898 20 1 7.7814 8.1988 2.8163 21 6 6.1844 4.9086 0.5733 22 6 6.2420 3.9224 -0.6122 23 1 7.2688 3.7876 -0.9522 24 8 5.4112 4.3717 -1.6845 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.8930 3.1915 1.2491 31 1 0.4400 2.1638 1.2493 32 1 1.8934 1.6498 2.1393 33 1 1.8933 1.6500 -2.1391 34 1 0.4399 2.1638 -1.2491 35 1 1.8929 3.1916 -1.2489 36 1 3.7358 3.4498 -0.0001 37 1 7.2812 2.3387 1.4701 38 1 5.6322 2.0851 2.1197 39 1 5.2358 5.9835 5.0087 40 1 5.2776 5.5104 0.5111 41 1 7.0622 5.5547 0.5611 42 1 5.6710 5.2278 -2.0513 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220249656.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:05 Heat of formation + Delta-G solvation = -68.690418 kcal Electronic energy + Delta-G solvation = -22396.326667 eV Core-core repulsion = 19183.906958 eV Total energy + Delta-G solvation = -3212.419709 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.18387 -38.44754 -36.14860 -35.35305 -33.81222 -32.00336 -30.27673 -28.60840 -27.74142 -27.36415 -24.89477 -23.92316 -21.94450 -20.92126 -19.87887 -18.90902 -17.59311 -17.06599 -16.77640 -16.07708 -15.35592 -15.03880 -14.78347 -14.29081 -13.97201 -13.77865 -13.68108 -13.15022 -12.92203 -12.62285 -12.54932 -12.29983 -12.17145 -11.89056 -11.79963 -11.52920 -11.32153 -11.24594 -11.19782 -10.72616 -10.69472 -10.62225 -10.56584 -9.99608 -9.52840 -9.36420 -9.23335 -8.77016 -8.41566 -7.17744 -6.38754 -3.24571 2.94991 3.31178 3.43105 3.45152 3.61157 4.24389 4.52110 4.67130 4.77655 4.83616 4.88724 5.04310 5.18824 5.22505 5.28901 5.41763 5.42674 5.43486 5.54179 5.63639 5.76904 5.81084 5.84577 5.89088 5.96093 5.99937 6.04077 6.10825 6.17170 6.32276 6.38693 6.40748 6.48586 6.51490 6.91045 7.61072 7.73264 7.89960 8.27697 8.56119 8.97373 9.51458 10.17398 11.09260 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.023655 B = 0.005796 C = 0.005338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.390443 B = 4829.739790 C = 5244.258790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.098 4.098 3 C -0.081 4.081 4 C -0.142 4.142 5 C -0.140 4.140 6 C 0.524 3.476 7 O -0.554 6.554 8 N -0.692 5.692 9 C 0.142 3.858 10 H 0.098 0.902 11 C 0.122 3.878 12 N -0.602 5.602 13 C -0.329 4.329 14 H 0.077 0.923 15 C -0.019 4.019 16 N -0.916 5.916 17 Si 1.070 2.930 18 H -0.295 1.295 19 H -0.294 1.294 20 H -0.299 1.299 21 C 0.085 3.915 22 C 0.082 3.918 23 H 0.076 0.924 24 O -0.558 6.558 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.405 0.595 37 H 0.035 0.965 38 H 0.055 0.945 39 H 0.263 0.737 40 H 0.049 0.951 41 H 0.031 0.969 42 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.223 -7.146 -12.480 16.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.136 4.136 3 C -0.084 4.084 4 C -0.200 4.200 5 C -0.198 4.198 6 C 0.310 3.690 7 O -0.432 6.432 8 N -0.341 5.341 9 C 0.035 3.965 10 H 0.116 0.884 11 C -0.005 4.005 12 N -0.330 5.330 13 C -0.456 4.456 14 H 0.095 0.905 15 C -0.220 4.220 16 N -0.557 5.557 17 Si 0.904 3.096 18 H -0.223 1.223 19 H -0.222 1.222 20 H -0.227 1.227 21 C -0.040 4.040 22 C 0.022 3.978 23 H 0.094 0.906 24 O -0.362 6.362 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.241 0.759 37 H 0.052 0.948 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.048 0.952 42 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -6.613 -6.872 -12.581 15.787 hybrid contribution -0.131 -0.528 0.344 0.644 sum -6.744 -7.401 -12.237 15.811 Atomic orbital electron populations 1.21920 0.95737 1.01552 1.02020 1.21327 0.95155 0.93921 1.03181 1.20787 0.91642 0.98135 0.97822 1.21912 1.01522 1.00543 0.96014 1.21891 1.01593 1.00301 0.95966 1.20485 0.89632 0.83564 0.75335 1.90645 1.70326 1.31468 1.50743 1.45517 1.06333 1.08775 1.73489 1.22194 0.80784 0.96554 0.96960 0.88373 1.22091 0.97857 0.87923 0.92585 1.44671 1.87397 0.99638 1.01331 1.20022 1.49038 0.94082 0.82492 0.90476 1.25783 0.99838 0.94225 1.02197 1.70916 1.34052 1.36400 1.14320 0.83703 0.76654 0.75008 0.74237 1.22322 1.22237 1.22662 1.22396 0.99835 0.94581 0.87197 1.23188 0.93624 0.94291 0.86655 0.90573 1.86463 1.57407 1.41247 1.51123 0.92468 0.92785 0.92333 0.91484 0.91361 0.91792 0.91351 0.92044 0.92276 0.91362 0.91931 0.75938 0.94775 0.92712 0.92634 0.93271 0.95150 0.77481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.21 37.16 0.34 -1.11 16 2 C -0.10 -1.19 4.28 -26.73 -0.11 -1.30 16 3 C -0.08 -1.04 0.64 -155.65 -0.10 -1.14 16 4 C -0.14 -1.79 8.02 37.16 0.30 -1.50 16 5 C -0.14 -1.52 8.02 37.16 0.30 -1.23 16 6 C 0.52 8.71 6.48 -10.99 -0.07 8.64 16 7 O -0.55 -10.86 15.62 5.56 0.09 -10.77 16 8 N -0.69 -11.57 4.60 -51.61 -0.24 -11.81 16 9 C 0.14 2.49 3.31 -65.66 -0.22 2.27 16 10 H 0.10 1.70 7.54 -51.93 -0.39 1.30 16 11 C 0.12 2.52 6.95 -2.41 -0.02 2.50 16 12 N -0.60 -14.30 3.29 -169.93 -0.56 -14.85 16 13 C -0.33 -9.24 10.43 -15.06 -0.16 -9.39 16 14 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 15 C -0.02 -0.56 5.43 -17.43 -0.09 -0.65 16 16 N -0.92 -28.12 13.70 55.49 0.76 -27.36 16 17 Si 1.07 26.01 24.66 -169.99 -4.19 21.81 16 18 H -0.30 -6.63 6.76 56.52 0.38 -6.25 16 19 H -0.29 -6.83 6.71 56.52 0.38 -6.45 16 20 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 21 C 0.09 1.75 4.70 -3.06 -0.01 1.74 16 22 C 0.08 1.34 4.12 -24.90 -0.10 1.24 16 23 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 24 O -0.56 -7.82 12.67 -35.23 -0.45 -8.27 16 25 H 0.06 0.48 6.43 -51.93 -0.33 0.15 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.53 6.43 -51.93 -0.33 0.19 16 28 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 29 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 30 H 0.06 0.86 7.56 -51.93 -0.39 0.47 16 31 H 0.07 0.71 6.43 -51.93 -0.33 0.37 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.62 6.43 -51.93 -0.33 0.28 16 35 H 0.06 0.69 7.56 -51.93 -0.39 0.30 16 36 H 0.41 6.62 7.23 -40.82 -0.29 6.32 16 37 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.26 8.03 8.73 -40.82 -0.36 7.67 16 40 H 0.05 1.05 7.74 -51.92 -0.40 0.65 16 41 H 0.03 0.66 3.76 -51.93 -0.20 0.46 16 42 H 0.38 3.77 9.11 45.56 0.42 4.18 16 LS Contribution 324.76 15.07 4.89 4.89 Total: -1.00 -32.79 324.76 -5.63 -38.42 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -5.98 Total: 7.87 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: 0.05 Total: 0.06 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -0.04 Total: -54.02 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.36 Total: -19.04 kcal Atomic # 14 Polarization: 26.01 SS G_CDS: -4.19 Total: 21.81 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.79 -5.63 -38.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220249656.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.269 kcal (2) G-P(sol) polarization free energy of solvation -32.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds