Wall clock time and date at job start Mon Mar 30 2020 01:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47100 * 2 1 4 4 C 1.53007 * 109.46816 * 60.00326 * 3 2 1 5 5 C 1.52998 * 109.47194 * 300.00496 * 3 2 1 6 6 C 1.50702 * 109.46983 * 179.97438 * 3 2 1 7 7 O 1.21280 * 120.00276 * 0.02562 * 6 3 2 8 8 N 1.34775 * 119.99630 * 179.97438 * 6 3 2 9 9 C 1.46500 * 119.99838 * 180.02562 * 8 6 3 10 10 H 1.09002 * 110.88469 * 31.12619 * 9 8 6 11 11 C 1.55134 * 111.19437 * 267.19223 * 9 8 6 12 12 N 1.47425 * 104.72157 * 279.19206 * 11 9 8 13 13 C 1.36933 * 125.64812 * 155.81472 * 12 11 9 14 14 H 1.08000 * 120.00253 * 349.39183 * 13 12 11 15 15 C 1.38813 * 119.99762 * 169.39090 * 13 12 11 16 16 N 1.31622 * 119.99962 * 152.99773 * 15 13 12 17 17 Si 1.86797 * 120.00318 * 332.99342 * 15 13 12 18 18 H 1.48512 * 109.46853 * 85.20366 * 17 15 13 19 19 H 1.48500 * 109.47114 * 325.21006 * 17 15 13 20 20 H 1.48500 * 109.47381 * 205.20213 * 17 15 13 21 21 C 1.47024 * 108.70346 * 335.55181 * 12 11 9 22 22 C 1.54322 * 107.27070 * 1.28801 * 21 12 11 23 23 H 1.08998 * 110.72271 * 263.65456 * 22 21 12 24 24 O 1.42901 * 110.72187 * 140.55797 * 22 21 12 25 25 H 1.09000 * 109.47063 * 59.99887 * 1 2 3 26 26 H 1.08997 * 109.47014 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46789 * 299.99491 * 1 2 3 28 28 H 1.09003 * 109.47314 * 240.00498 * 2 1 3 29 29 H 1.09000 * 109.47063 * 120.00113 * 2 1 3 30 30 H 1.08997 * 109.46898 * 180.02562 * 4 3 2 31 31 H 1.08999 * 109.46991 * 299.99484 * 4 3 2 32 32 H 1.09000 * 109.46961 * 59.99709 * 4 3 2 33 33 H 1.08999 * 109.46581 * 299.99633 * 5 3 2 34 34 H 1.09000 * 109.47198 * 59.99759 * 5 3 2 35 35 H 1.08997 * 109.47198 * 179.97438 * 5 3 2 36 36 H 0.97005 * 120.00053 * 0.02562 * 8 6 3 37 37 H 1.08998 * 110.49537 * 160.35225 * 11 9 8 38 38 H 1.09000 * 110.33823 * 37.95299 * 11 9 8 39 39 H 0.97002 * 120.00152 * 5.05294 * 16 15 13 40 40 H 1.09007 * 109.88407 * 120.70344 * 21 12 11 41 41 H 1.09002 * 109.88260 * 241.86932 * 21 12 11 42 42 H 0.96695 * 114.00057 * 61.45129 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2494 5 6 1.5299 2.1638 -1.2492 6 6 3.5470 1.4425 0.0006 7 8 4.1535 0.3922 0.0006 8 7 4.2209 2.6097 0.0002 9 6 5.6859 2.6097 0.0003 10 1 6.0745 1.7378 -0.5258 11 6 6.2467 2.6811 1.4449 12 7 6.1697 4.1083 1.8066 13 6 6.1018 4.6062 3.0803 14 1 5.9295 3.9395 3.9123 15 6 6.2545 5.9680 3.3022 16 7 5.6936 6.5307 4.3516 17 14 7.2560 7.0018 2.1116 18 1 6.3928 7.4316 0.9821 19 1 8.3897 6.1971 1.5898 20 1 7.7814 8.1988 2.8163 21 6 6.1844 4.9086 0.5733 22 6 6.2420 3.9224 -0.6122 23 1 7.2688 3.7876 -0.9522 24 8 5.4112 4.3717 -1.6845 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.8930 3.1915 1.2491 31 1 0.4400 2.1638 1.2493 32 1 1.8934 1.6498 2.1393 33 1 1.8933 1.6500 -2.1391 34 1 0.4399 2.1638 -1.2491 35 1 1.8929 3.1916 -1.2489 36 1 3.7358 3.4498 -0.0001 37 1 7.2812 2.3387 1.4701 38 1 5.6322 2.0851 2.1197 39 1 5.2358 5.9835 5.0087 40 1 5.2776 5.5104 0.5111 41 1 7.0622 5.5547 0.5611 42 1 5.6710 5.2278 -2.0513 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220249656.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:04 Heat of formation + Delta-G solvation = -94.918501 kcal Electronic energy + Delta-G solvation = -22397.464002 eV Core-core repulsion = 19183.906958 eV Total energy + Delta-G solvation = -3213.557044 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.49998 -39.85346 -37.28868 -36.77705 -35.38658 -33.93164 -31.39665 -30.14325 -29.31437 -28.31380 -26.10612 -25.57210 -23.17900 -22.63484 -21.37504 -20.14297 -19.58353 -18.31726 -18.02117 -17.52158 -16.90664 -16.24739 -16.15909 -15.60817 -15.41470 -15.20287 -14.95593 -14.82379 -14.44819 -13.93153 -13.72255 -13.53790 -13.33547 -13.18713 -12.97063 -12.88718 -12.83303 -12.50332 -12.48812 -12.21390 -12.17405 -11.68008 -11.55293 -11.55062 -11.32157 -10.95825 -10.68675 -10.59931 -10.07933 -9.19853 -8.66270 -5.45467 1.37313 1.52743 1.62896 1.71166 2.17965 2.50989 2.90974 3.06626 3.36508 3.59763 3.62798 3.68868 3.75148 3.88964 4.12800 4.20121 4.39769 4.41788 4.43154 4.54389 4.62499 4.66048 4.73280 4.77328 4.79230 4.87859 4.91631 4.95745 5.04596 5.10058 5.12460 5.22236 5.39329 5.48374 5.52462 5.55690 6.05805 6.56101 6.78384 6.82171 7.23545 7.41302 8.07142 8.81560 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.023655 B = 0.005796 C = 0.005338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.390443 B = 4829.739790 C = 5244.258790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.096 4.096 3 C -0.077 4.077 4 C -0.139 4.139 5 C -0.135 4.135 6 C 0.516 3.484 7 O -0.588 6.588 8 N -0.691 5.691 9 C 0.144 3.856 10 H 0.106 0.894 11 C 0.121 3.879 12 N -0.618 5.618 13 C -0.323 4.323 14 H 0.037 0.963 15 C -0.073 4.073 16 N -0.950 5.950 17 Si 1.113 2.887 18 H -0.261 1.261 19 H -0.274 1.274 20 H -0.309 1.309 21 C 0.079 3.921 22 C 0.106 3.894 23 H 0.107 0.893 24 O -0.556 6.556 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.097 0.903 32 H 0.040 0.960 33 H 0.058 0.942 34 H 0.093 0.907 35 H 0.062 0.938 36 H 0.408 0.592 37 H 0.045 0.955 38 H 0.027 0.973 39 H 0.247 0.753 40 H 0.041 0.959 41 H 0.036 0.964 42 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.711 -6.652 -15.690 18.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.134 4.134 3 C -0.080 4.080 4 C -0.196 4.196 5 C -0.192 4.192 6 C 0.304 3.696 7 O -0.468 6.468 8 N -0.340 5.340 9 C 0.038 3.962 10 H 0.124 0.876 11 C -0.005 4.005 12 N -0.346 5.346 13 C -0.451 4.451 14 H 0.055 0.945 15 C -0.268 4.268 16 N -0.593 5.593 17 Si 0.940 3.060 18 H -0.187 1.187 19 H -0.201 1.201 20 H -0.237 1.237 21 C -0.046 4.046 22 C 0.045 3.955 23 H 0.124 0.876 24 O -0.364 6.364 25 H 0.092 0.908 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.115 0.885 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.112 0.888 35 H 0.081 0.919 36 H 0.244 0.756 37 H 0.063 0.937 38 H 0.045 0.955 39 H 0.056 0.944 40 H 0.059 0.941 41 H 0.053 0.947 42 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -7.119 -6.391 -15.838 18.503 hybrid contribution -0.008 -0.788 1.413 1.618 sum -7.127 -7.179 -14.425 17.619 Atomic orbital electron populations 1.21890 0.93118 1.02595 1.03011 1.21310 0.97348 0.92986 1.01776 1.20840 0.88879 0.99125 0.99112 1.21900 1.03296 0.99413 0.95005 1.21884 1.03153 0.99757 0.94397 1.21249 0.91300 0.82888 0.74145 1.90621 1.71410 1.32569 1.52249 1.45563 1.06151 1.09037 1.73207 1.22096 0.81306 0.98057 0.94772 0.87587 1.22163 0.98157 0.85932 0.94295 1.44625 1.87514 1.01458 1.01042 1.19843 1.47685 0.93758 0.83804 0.94501 1.27134 1.00255 0.95966 1.03414 1.71043 1.36287 1.36474 1.15472 0.83181 0.76069 0.73378 0.73377 1.18711 1.20056 1.23745 1.22601 0.99386 0.95371 0.87231 1.22939 0.95212 0.91652 0.85675 0.87576 1.86437 1.57188 1.42918 1.49837 0.90848 0.91871 0.91825 0.92236 0.93521 0.92832 0.88459 0.94112 0.92298 0.88806 0.91942 0.75625 0.93715 0.95484 0.94385 0.94067 0.94718 0.74888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.21 71.98 0.66 -1.75 16 2 C -0.10 -2.25 4.28 30.60 0.13 -2.12 16 3 C -0.08 -1.89 0.64 -52.92 -0.03 -1.93 16 4 C -0.14 -3.39 8.02 71.98 0.58 -2.81 16 5 C -0.13 -2.57 8.02 71.98 0.58 -1.99 16 6 C 0.52 17.00 6.48 87.66 0.57 17.57 16 7 O -0.59 -23.25 15.62 -3.03 -0.05 -23.29 16 8 N -0.69 -22.45 4.60 -435.59 -2.00 -24.46 16 9 C 0.14 4.85 3.31 46.46 0.15 5.00 16 10 H 0.11 3.47 7.54 -2.39 -0.02 3.45 16 11 C 0.12 4.98 6.95 86.93 0.60 5.59 16 12 N -0.62 -29.19 3.29 -691.53 -2.27 -31.46 16 13 C -0.32 -18.60 10.43 84.03 0.88 -17.72 16 14 H 0.04 2.36 8.06 -2.91 -0.02 2.33 16 15 C -0.07 -4.28 5.43 84.86 0.46 -3.82 16 16 N -0.95 -60.05 13.70 21.65 0.30 -59.75 16 17 Si 1.11 51.33 24.66 68.60 1.69 53.02 16 18 H -0.26 -10.57 6.76 99.48 0.67 -9.90 16 19 H -0.27 -11.63 6.71 99.48 0.67 -10.96 16 20 H -0.31 -14.70 7.11 99.48 0.71 -13.99 16 21 C 0.08 3.02 4.70 86.73 0.41 3.43 16 22 C 0.11 3.05 4.12 31.78 0.13 3.19 16 23 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 24 O -0.56 -13.21 12.67 -148.98 -1.89 -15.09 16 25 H 0.07 0.97 6.43 -2.39 -0.02 0.95 16 26 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.06 0.97 6.43 -2.39 -0.02 0.96 16 28 H 0.06 1.47 8.10 -2.39 -0.02 1.45 16 29 H 0.05 1.27 8.10 -2.39 -0.02 1.25 16 30 H 0.05 1.41 7.56 -2.39 -0.02 1.39 16 31 H 0.10 1.79 6.43 -2.39 -0.02 1.78 16 32 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.09 1.33 6.43 -2.39 -0.02 1.31 16 35 H 0.06 1.21 7.56 -2.39 -0.02 1.19 16 36 H 0.41 12.79 7.23 -92.70 -0.67 12.12 16 37 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.25 15.85 8.73 -92.71 -0.81 15.04 16 40 H 0.04 1.66 7.74 -2.38 -0.02 1.64 16 41 H 0.04 1.35 3.76 -2.39 -0.01 1.34 16 42 H 0.40 5.94 9.11 -74.06 -0.67 5.26 16 Total: -1.00 -73.63 324.76 0.46 -73.17 By element: Atomic # 1 Polarization: 25.67 SS G_CDS: -0.43 Total: 25.24 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: 5.12 Total: 2.63 kcal Atomic # 7 Polarization: -111.69 SS G_CDS: -3.98 Total: -115.67 kcal Atomic # 8 Polarization: -36.45 SS G_CDS: -1.94 Total: -38.39 kcal Atomic # 14 Polarization: 51.33 SS G_CDS: 1.69 Total: 53.02 kcal Total: -73.63 0.46 -73.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220249656.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.753 kcal (2) G-P(sol) polarization free energy of solvation -73.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds