Wall clock time and date at job start Mon Mar 30 2020 01:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36933 * 119.99904 * 2 1 4 4 H 1.08000 * 120.00180 * 177.63234 * 3 2 1 5 5 C 1.38811 * 120.00249 * 357.63813 * 3 2 1 6 6 N 1.31622 * 120.00129 * 33.59626 * 5 3 2 7 7 Si 1.86800 * 120.00107 * 213.60355 * 5 3 2 8 8 H 1.48497 * 109.47006 * 94.99468 * 7 5 3 9 9 H 1.48501 * 109.46945 * 214.99504 * 7 5 3 10 10 H 1.48499 * 109.46853 * 334.99424 * 7 5 3 11 11 C 1.46505 * 120.00149 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.46960 * 270.00345 * 11 2 1 13 13 N 1.46505 * 109.46960 * 179.97438 * 12 11 2 14 14 C 1.34775 * 119.99899 * 179.97438 * 13 12 11 15 15 O 1.21287 * 119.99985 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.00066 * 180.02562 * 14 13 12 17 17 C 1.52995 * 109.47483 * 173.92561 * 16 14 13 18 18 C 1.52999 * 109.47270 * 179.49413 * 17 16 14 19 19 O 1.42894 * 109.46920 * 299.49492 * 17 16 14 20 20 C 1.52999 * 109.47308 * 59.49350 * 17 16 14 21 21 C 1.53001 * 117.50214 * 248.62803 * 20 17 16 22 22 C 1.52997 * 117.50282 * 180.02562 * 20 17 16 23 23 H 1.09006 * 109.47246 * 273.93483 * 1 2 3 24 24 H 1.08994 * 109.47372 * 33.93783 * 1 2 3 25 25 H 1.09004 * 109.47260 * 153.94054 * 1 2 3 26 26 H 0.96998 * 120.00318 * 180.02562 * 6 5 3 27 27 H 1.08994 * 109.47099 * 149.99919 * 11 2 1 28 28 H 1.09005 * 109.46540 * 29.99720 * 11 2 1 29 29 H 1.08994 * 109.47562 * 59.99858 * 12 11 2 30 30 H 1.09003 * 109.47332 * 299.99784 * 12 11 2 31 31 H 0.97001 * 119.99835 * 0.26935 * 13 12 11 32 32 H 1.09004 * 109.47062 * 293.92460 * 16 14 13 33 33 H 1.08996 * 109.47270 * 53.91828 * 16 14 13 34 34 H 1.09000 * 109.46834 * 64.86175 * 18 17 16 35 35 H 1.09006 * 109.47333 * 184.86132 * 18 17 16 36 36 H 1.08996 * 109.47145 * 304.85809 * 18 17 16 37 37 H 0.96704 * 114.00088 * 60.00182 * 19 17 16 38 38 H 1.09008 * 115.54967 * 34.33065 * 20 17 16 39 39 H 1.09006 * 117.49211 * 359.97438 * 21 20 17 40 40 H 1.08992 * 117.50223 * 145.02002 * 21 20 17 41 41 H 1.09000 * 117.50097 * 214.97941 * 22 20 17 42 42 H 1.09000 * 117.49920 * 359.97438 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2290 1.1863 0.0386 5 6 1.4565 2.3875 -0.0495 6 7 0.2834 2.4954 0.5376 7 14 2.1885 3.8516 -0.9497 8 1 1.6578 3.8962 -2.3359 9 1 1.8224 5.1031 -0.2390 10 1 3.6670 3.7193 -0.9896 11 6 2.1976 -1.2688 -0.0006 12 6 2.4525 -1.7111 1.4417 13 7 3.1845 -2.9801 1.4412 14 6 3.5217 -3.5640 2.6081 15 8 3.2196 -3.0387 3.6587 16 6 4.2752 -4.8691 2.6076 17 6 4.6628 -5.2349 4.0417 18 6 5.4168 -6.5662 4.0424 19 8 5.5009 -4.2125 4.5840 20 6 3.3990 -5.3641 4.8944 21 6 3.1653 -4.3073 5.9758 22 6 3.5765 -5.7268 6.3701 23 1 -0.3634 0.0705 1.0253 24 1 -0.3634 0.8525 -0.5737 25 1 -0.3634 -0.9232 -0.4515 26 1 -0.2011 3.3349 0.5027 27 1 3.1499 -1.1382 -0.5143 28 1 1.6084 -2.0282 -0.5147 29 1 1.5001 -1.8417 1.9555 30 1 3.0416 -0.9517 1.9560 31 1 3.4302 -3.3979 0.6009 32 1 3.6432 -5.6534 2.1907 33 1 5.1760 -4.7684 2.0021 34 1 6.3593 -6.4502 3.5074 35 1 5.6173 -6.8697 5.0700 36 1 4.8110 -7.3272 3.5506 37 1 5.0866 -3.3392 4.6144 38 1 2.5234 -5.7606 4.3802 39 1 3.9123 -3.5202 6.0800 40 1 2.1360 -4.0083 6.1733 41 1 2.8177 -6.3620 6.8271 42 1 4.5936 -5.8738 6.7335 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663166238.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:59 Heat of formation + Delta-G solvation = -38.332607 kcal Electronic energy + Delta-G solvation = -21276.362585 eV Core-core repulsion = 18065.259289 eV Total energy + Delta-G solvation = -3211.103296 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.30067 -38.22717 -36.08011 -34.96136 -34.17171 -32.33516 -31.37689 -29.03159 -27.36002 -25.92936 -23.77132 -22.87601 -22.15746 -20.71928 -20.40251 -19.72876 -17.16322 -16.88900 -16.65190 -16.16818 -15.58791 -15.14869 -14.68559 -14.35917 -14.05325 -13.71128 -13.37143 -12.89246 -12.79876 -12.67776 -12.47800 -12.37799 -12.20588 -11.97399 -11.34318 -11.25825 -11.08872 -11.00159 -10.87821 -10.62541 -10.42282 -10.34394 -10.18999 -10.07719 -9.86600 -9.85001 -9.37758 -8.70139 -8.32846 -7.07717 -5.91187 -3.06922 2.80722 3.38219 3.40001 3.48849 3.50196 3.86905 4.18876 4.49748 4.58142 4.65802 4.78637 5.07832 5.11120 5.22543 5.26925 5.33864 5.42158 5.49454 5.57067 5.68342 5.70073 5.77304 5.79369 5.88963 6.03984 6.09930 6.19909 6.21125 6.32442 6.60245 6.63245 6.64109 6.88383 7.34072 7.58827 7.70055 7.74951 7.81009 8.23330 8.44588 9.12523 9.80724 10.24662 11.18635 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.032749 B = 0.003491 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.776224 B = 8019.639953 C = 8100.700800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.150 3.850 2 N -0.599 5.599 3 C -0.268 4.268 4 H 0.079 0.921 5 C 0.009 3.991 6 N -0.887 5.887 7 Si 0.884 3.116 8 H -0.288 1.288 9 H -0.293 1.293 10 H -0.279 1.279 11 C 0.146 3.854 12 C 0.092 3.908 13 N -0.724 5.724 14 C 0.506 3.494 15 O -0.537 6.537 16 C -0.169 4.169 17 C 0.178 3.822 18 C -0.135 4.135 19 O -0.564 6.564 20 C -0.171 4.171 21 C -0.136 4.136 22 C -0.187 4.187 23 H 0.013 0.987 24 H 0.069 0.931 25 H 0.001 0.999 26 H 0.255 0.745 27 H 0.051 0.949 28 H 0.043 0.957 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.395 0.605 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.387 0.613 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.810 -18.614 4.101 20.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 N -0.322 5.322 3 C -0.396 4.396 4 H 0.096 0.904 5 C -0.190 4.190 6 N -0.531 5.531 7 Si 0.713 3.287 8 H -0.215 1.215 9 H -0.220 1.220 10 H -0.204 1.204 11 C 0.017 3.983 12 C -0.034 4.034 13 N -0.375 5.375 14 C 0.291 3.709 15 O -0.415 6.415 16 C -0.210 4.210 17 C 0.137 3.863 18 C -0.192 4.192 19 O -0.375 6.375 20 C -0.189 4.189 21 C -0.173 4.173 22 C -0.224 4.224 23 H 0.031 0.969 24 H 0.087 0.913 25 H 0.020 0.980 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.228 0.772 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.239 0.761 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.842 -18.527 4.910 20.351 hybrid contribution -0.137 1.131 -0.903 1.453 sum 6.705 -17.396 4.007 19.069 Atomic orbital electron populations 1.21100 0.82208 0.97191 0.98997 1.44108 1.02102 1.00522 1.85449 1.19212 0.91015 0.83283 1.46112 0.90351 1.24705 0.96698 0.97348 1.00255 1.70333 1.16404 1.25678 1.40646 0.86521 0.78917 0.82358 0.80871 1.21482 1.22038 1.20401 1.20903 0.96492 0.88581 0.92291 1.22538 0.95691 0.83021 1.02104 1.46212 1.58088 1.25192 1.08004 1.20594 0.79521 0.86455 0.84282 1.90682 1.54886 1.65145 1.30752 1.22478 1.01759 0.96617 1.00141 1.20288 0.88544 0.88679 0.88821 1.21727 1.00236 0.94230 1.03048 1.86400 1.44184 1.21562 1.85309 1.22781 0.99106 1.06074 0.90983 1.22654 1.02188 0.91641 1.00825 1.23002 1.02228 0.99913 0.97220 0.96851 0.91267 0.98020 0.93547 0.93028 0.93867 0.92280 0.91488 0.77177 0.88238 0.88423 0.91882 0.91563 0.91220 0.76057 0.88287 0.88501 0.89430 0.89545 0.88951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 3.64 9.25 59.85 0.55 4.20 16 2 N -0.60 -14.71 2.93 -181.12 -0.53 -15.24 16 3 C -0.27 -7.29 9.65 -15.06 -0.15 -7.44 16 4 H 0.08 2.09 8.01 -52.49 -0.42 1.67 16 5 C 0.01 0.25 4.84 -17.43 -0.08 0.16 16 6 N -0.89 -25.68 10.80 55.49 0.60 -25.08 16 7 Si 0.88 21.46 29.66 -169.99 -5.04 16.41 16 8 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 9 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 C 0.15 2.77 5.82 -4.04 -0.02 2.75 16 12 C 0.09 1.68 6.00 -4.04 -0.02 1.66 16 13 N -0.72 -9.88 5.56 -60.29 -0.33 -10.21 16 14 C 0.51 6.96 7.31 -10.99 -0.08 6.88 16 15 O -0.54 -9.06 11.38 -10.32 -0.12 -9.17 16 16 C -0.17 -1.69 4.96 -27.89 -0.14 -1.83 16 17 C 0.18 1.96 0.92 -90.62 -0.08 1.87 16 18 C -0.14 -1.18 8.75 37.16 0.33 -0.85 16 19 O -0.56 -7.49 12.11 -51.10 -0.62 -8.11 16 20 C -0.17 -1.98 3.97 -90.62 -0.36 -2.34 16 21 C -0.14 -1.75 7.87 -26.75 -0.21 -1.96 16 22 C -0.19 -2.01 9.61 -26.76 -0.26 -2.27 16 23 H 0.01 0.34 8.07 -51.93 -0.42 -0.07 16 24 H 0.07 1.84 6.11 -51.93 -0.32 1.52 16 25 H 0.00 0.03 7.85 -51.93 -0.41 -0.38 16 26 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.05 0.94 8.04 -51.93 -0.42 0.52 16 28 H 0.04 0.73 7.87 -51.93 -0.41 0.32 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.40 4.12 8.47 -40.82 -0.35 3.78 16 32 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.59 7.13 -51.93 -0.37 0.22 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.39 5.45 5.44 45.56 0.25 5.70 16 38 H 0.10 1.14 8.11 -51.92 -0.42 0.71 16 39 H 0.10 1.33 6.31 -51.93 -0.33 1.01 16 40 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.09 0.98 7.59 -51.93 -0.39 0.59 16 LS Contribution 335.15 15.07 5.05 5.05 Total: -1.00 -30.91 335.15 -8.04 -38.95 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -6.52 Total: 6.57 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -0.53 Total: 0.83 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: -0.27 Total: -50.53 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.74 Total: -17.29 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.04 Total: 16.41 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.91 -8.04 -38.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663166238.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.618 kcal (2) G-P(sol) polarization free energy of solvation -30.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds