Wall clock time and date at job start Mon Mar 30 2020 01:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36933 * 119.99904 * 2 1 4 4 H 1.08000 * 120.00180 * 177.63234 * 3 2 1 5 5 C 1.38811 * 120.00249 * 357.63813 * 3 2 1 6 6 N 1.31622 * 120.00129 * 33.59626 * 5 3 2 7 7 Si 1.86800 * 120.00107 * 213.60355 * 5 3 2 8 8 H 1.48497 * 109.47006 * 94.99468 * 7 5 3 9 9 H 1.48501 * 109.46945 * 214.99504 * 7 5 3 10 10 H 1.48499 * 109.46853 * 334.99424 * 7 5 3 11 11 C 1.46505 * 120.00149 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.46960 * 270.00345 * 11 2 1 13 13 N 1.46505 * 109.46960 * 179.97438 * 12 11 2 14 14 C 1.34775 * 119.99899 * 179.97438 * 13 12 11 15 15 O 1.21287 * 119.99985 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.00066 * 180.02562 * 14 13 12 17 17 C 1.52995 * 109.47483 * 173.92561 * 16 14 13 18 18 C 1.52999 * 109.47270 * 179.49413 * 17 16 14 19 19 O 1.42894 * 109.46920 * 299.49492 * 17 16 14 20 20 C 1.52999 * 109.47308 * 59.49350 * 17 16 14 21 21 C 1.53001 * 117.50214 * 248.62803 * 20 17 16 22 22 C 1.52997 * 117.50282 * 180.02562 * 20 17 16 23 23 H 1.09006 * 109.47246 * 273.93483 * 1 2 3 24 24 H 1.08994 * 109.47372 * 33.93783 * 1 2 3 25 25 H 1.09004 * 109.47260 * 153.94054 * 1 2 3 26 26 H 0.96998 * 120.00318 * 180.02562 * 6 5 3 27 27 H 1.08994 * 109.47099 * 149.99919 * 11 2 1 28 28 H 1.09005 * 109.46540 * 29.99720 * 11 2 1 29 29 H 1.08994 * 109.47562 * 59.99858 * 12 11 2 30 30 H 1.09003 * 109.47332 * 299.99784 * 12 11 2 31 31 H 0.97001 * 119.99835 * 0.26935 * 13 12 11 32 32 H 1.09004 * 109.47062 * 293.92460 * 16 14 13 33 33 H 1.08996 * 109.47270 * 53.91828 * 16 14 13 34 34 H 1.09000 * 109.46834 * 64.86175 * 18 17 16 35 35 H 1.09006 * 109.47333 * 184.86132 * 18 17 16 36 36 H 1.08996 * 109.47145 * 304.85809 * 18 17 16 37 37 H 0.96704 * 114.00088 * 60.00182 * 19 17 16 38 38 H 1.09008 * 115.54967 * 34.33065 * 20 17 16 39 39 H 1.09006 * 117.49211 * 359.97438 * 21 20 17 40 40 H 1.08992 * 117.50223 * 145.02002 * 21 20 17 41 41 H 1.09000 * 117.50097 * 214.97941 * 22 20 17 42 42 H 1.09000 * 117.49920 * 359.97438 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2290 1.1863 0.0386 5 6 1.4565 2.3875 -0.0495 6 7 0.2834 2.4954 0.5376 7 14 2.1885 3.8516 -0.9497 8 1 1.6578 3.8962 -2.3359 9 1 1.8224 5.1031 -0.2390 10 1 3.6670 3.7193 -0.9896 11 6 2.1976 -1.2688 -0.0006 12 6 2.4525 -1.7111 1.4417 13 7 3.1845 -2.9801 1.4412 14 6 3.5217 -3.5640 2.6081 15 8 3.2196 -3.0387 3.6587 16 6 4.2752 -4.8691 2.6076 17 6 4.6628 -5.2349 4.0417 18 6 5.4168 -6.5662 4.0424 19 8 5.5009 -4.2125 4.5840 20 6 3.3990 -5.3641 4.8944 21 6 3.1653 -4.3073 5.9758 22 6 3.5765 -5.7268 6.3701 23 1 -0.3634 0.0705 1.0253 24 1 -0.3634 0.8525 -0.5737 25 1 -0.3634 -0.9232 -0.4515 26 1 -0.2011 3.3349 0.5027 27 1 3.1499 -1.1382 -0.5143 28 1 1.6084 -2.0282 -0.5147 29 1 1.5001 -1.8417 1.9555 30 1 3.0416 -0.9517 1.9560 31 1 3.4302 -3.3979 0.6009 32 1 3.6432 -5.6534 2.1907 33 1 5.1760 -4.7684 2.0021 34 1 6.3593 -6.4502 3.5074 35 1 5.6173 -6.8697 5.0700 36 1 4.8110 -7.3272 3.5506 37 1 5.0866 -3.3392 4.6144 38 1 2.5234 -5.7606 4.3802 39 1 3.9123 -3.5202 6.0800 40 1 2.1360 -4.0083 6.1733 41 1 2.8177 -6.3620 6.8271 42 1 4.5936 -5.8738 6.7335 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663166238.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:58 Heat of formation + Delta-G solvation = -59.459439 kcal Electronic energy + Delta-G solvation = -21277.278713 eV Core-core repulsion = 18065.259289 eV Total energy + Delta-G solvation = -3212.019424 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.33087 -39.30661 -37.80412 -35.92148 -35.62523 -33.51768 -32.98392 -30.30902 -28.55287 -27.93934 -25.14794 -24.07674 -23.10765 -22.38577 -21.56078 -20.69174 -18.83119 -18.11735 -17.80322 -17.29281 -16.73295 -16.70525 -16.17738 -15.76057 -15.26474 -15.06955 -15.01794 -14.31317 -14.21190 -13.75725 -13.67839 -13.35928 -13.20339 -13.02283 -12.84472 -12.79286 -12.70567 -12.45015 -12.21362 -12.11033 -11.95541 -11.92366 -11.80319 -11.34413 -11.20650 -10.76862 -10.47710 -10.38063 -9.99584 -9.07409 -7.99486 -5.16435 1.46382 1.50169 1.58321 1.72289 2.23639 2.54469 2.96300 3.14117 3.31524 3.66520 3.74086 3.83027 3.93807 4.14539 4.21416 4.23122 4.32648 4.45196 4.57446 4.64899 4.69829 4.79070 4.80691 4.82684 4.93720 5.00844 5.05348 5.14785 5.17848 5.31647 5.32489 5.34574 5.39231 5.50520 5.59707 5.71200 6.21395 6.66239 6.69942 7.07236 7.37917 7.83539 8.22945 9.10095 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.032749 B = 0.003491 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.776224 B = 8019.639953 C = 8100.700800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.617 5.617 3 C -0.275 4.275 4 H 0.080 0.920 5 C -0.046 4.046 6 N -0.923 5.923 7 Si 0.951 3.049 8 H -0.285 1.285 9 H -0.300 1.300 10 H -0.268 1.268 11 C 0.147 3.853 12 C 0.116 3.884 13 N -0.713 5.713 14 C 0.500 3.500 15 O -0.572 6.572 16 C -0.158 4.158 17 C 0.168 3.832 18 C -0.132 4.132 19 O -0.577 6.577 20 C -0.168 4.168 21 C -0.160 4.160 22 C -0.169 4.169 23 H -0.016 1.016 24 H 0.042 0.958 25 H 0.039 0.961 26 H 0.251 0.749 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.033 0.967 30 H 0.029 0.971 31 H 0.415 0.585 32 H 0.132 0.868 33 H 0.119 0.881 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.094 0.906 37 H 0.379 0.621 38 H 0.103 0.897 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.101 0.899 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.147 -21.072 2.637 22.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.340 5.340 3 C -0.404 4.404 4 H 0.098 0.902 5 C -0.242 4.242 6 N -0.569 5.569 7 Si 0.779 3.221 8 H -0.212 1.212 9 H -0.228 1.228 10 H -0.193 1.193 11 C 0.020 3.980 12 C -0.012 4.012 13 N -0.366 5.366 14 C 0.287 3.713 15 O -0.452 6.452 16 C -0.198 4.198 17 C 0.127 3.873 18 C -0.189 4.189 19 O -0.387 6.387 20 C -0.186 4.186 21 C -0.197 4.197 22 C -0.205 4.205 23 H 0.002 0.998 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.252 0.748 32 H 0.150 0.850 33 H 0.138 0.862 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.113 0.887 37 H 0.231 0.769 38 H 0.121 0.879 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.119 0.881 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.226 -21.047 3.416 22.854 hybrid contribution -0.531 1.815 -0.388 1.930 sum 7.695 -19.232 3.029 20.935 Atomic orbital electron populations 1.20868 0.82553 0.97864 0.97074 1.44374 1.02354 1.01785 1.85526 1.19533 0.91307 0.84547 1.44983 0.90229 1.25431 0.97511 1.00086 1.01129 1.70452 1.18019 1.26139 1.42260 0.85490 0.78573 0.78843 0.79189 1.21226 1.22784 1.19290 1.21091 0.97127 0.87135 0.92658 1.21871 0.94284 0.84276 1.00744 1.45946 1.57641 1.23611 1.09357 1.21382 0.78992 0.87461 0.83423 1.90694 1.56089 1.66302 1.32103 1.22492 1.02525 0.94706 1.00028 1.20619 0.88367 0.89187 0.89088 1.21753 1.00642 0.93146 1.03336 1.86398 1.44884 1.21614 1.85795 1.22882 0.99666 1.04695 0.91388 1.22539 1.00993 0.92544 1.03633 1.23025 1.02656 0.98001 0.96851 0.99782 0.93890 0.94285 0.94009 0.91632 0.90688 0.94844 0.95252 0.74795 0.84976 0.86248 0.91303 0.91948 0.88722 0.76931 0.87874 0.90169 0.90803 0.88060 0.88733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 7.90 9.25 127.77 1.18 9.08 16 2 N -0.62 -30.11 2.93 -726.92 -2.13 -32.24 16 3 C -0.27 -14.96 9.65 84.03 0.81 -14.15 16 4 H 0.08 4.22 8.01 -2.91 -0.02 4.20 16 5 C -0.05 -2.56 4.84 84.86 0.41 -2.15 16 6 N -0.92 -54.82 10.80 21.65 0.23 -54.59 16 7 Si 0.95 44.62 29.66 68.60 2.03 46.66 16 8 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 9 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 11 C 0.15 5.31 5.82 86.38 0.50 5.82 16 12 C 0.12 4.17 6.00 86.38 0.52 4.69 16 13 N -0.71 -18.05 5.56 -463.06 -2.57 -20.62 16 14 C 0.50 12.99 7.31 87.66 0.64 13.63 16 15 O -0.57 -19.52 11.38 12.13 0.14 -19.38 16 16 C -0.16 -2.61 4.96 29.85 0.15 -2.46 16 17 C 0.17 3.32 0.92 -10.80 -0.01 3.31 16 18 C -0.13 -1.85 8.75 71.98 0.63 -1.22 16 19 O -0.58 -14.92 12.11 -133.80 -1.62 -16.54 16 20 C -0.17 -3.65 3.97 -10.79 -0.04 -3.69 16 21 C -0.16 -4.21 7.87 30.58 0.24 -3.97 16 22 C -0.17 -3.42 9.61 30.58 0.29 -3.13 16 23 H -0.02 -0.88 8.07 -2.38 -0.02 -0.89 16 24 H 0.04 2.31 6.11 -2.39 -0.01 2.30 16 25 H 0.04 1.57 7.85 -2.39 -0.02 1.55 16 26 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 27 H 0.07 2.21 8.04 -2.39 -0.02 2.19 16 28 H 0.07 2.27 7.87 -2.38 -0.02 2.25 16 29 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.42 7.21 8.47 -92.71 -0.79 6.42 16 32 H 0.13 1.40 8.14 -2.38 -0.02 1.38 16 33 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.06 0.94 7.13 -2.38 -0.02 0.92 16 36 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.38 10.95 5.44 -74.05 -0.40 10.55 16 38 H 0.10 2.15 8.11 -2.38 -0.02 2.13 16 39 H 0.08 2.35 6.31 -2.38 -0.02 2.34 16 40 H 0.07 2.08 8.14 -2.39 -0.02 2.07 16 41 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.09 1.89 7.59 -2.39 -0.02 1.87 16 Total: -1.00 -69.08 335.15 1.23 -67.84 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: -0.18 Total: 23.11 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: 5.33 Total: 5.76 kcal Atomic # 7 Polarization: -102.98 SS G_CDS: -4.47 Total: -107.45 kcal Atomic # 8 Polarization: -34.44 SS G_CDS: -1.48 Total: -35.92 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.66 kcal Total: -69.08 1.23 -67.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663166238.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.385 kcal (2) G-P(sol) polarization free energy of solvation -69.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds