Wall clock time and date at job start Mon Mar 30 2020 01:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36935 * 120.00006 * 2 1 4 4 H 1.08007 * 120.00083 * 202.34423 * 3 2 1 5 5 C 1.38806 * 119.99873 * 22.35051 * 3 2 1 6 6 N 1.31618 * 120.00556 * 11.34027 * 5 3 2 7 7 Si 1.86803 * 119.99904 * 191.34073 * 5 3 2 8 8 H 1.48506 * 109.47160 * 89.99908 * 7 5 3 9 9 H 1.48500 * 109.47308 * 209.99744 * 7 5 3 10 10 H 1.48498 * 109.47146 * 329.99972 * 7 5 3 11 11 C 1.46504 * 119.99834 * 180.02562 * 2 1 3 12 12 C 1.53000 * 109.47095 * 269.99946 * 11 2 1 13 13 N 1.46497 * 109.46848 * 180.02562 * 12 11 2 14 14 C 1.34775 * 120.00049 * 180.02562 * 13 12 11 15 15 O 1.21281 * 120.00154 * 359.97438 * 14 13 12 16 16 C 1.50703 * 120.00465 * 180.02562 * 14 13 12 17 17 C 1.53000 * 109.47264 * 179.97438 * 16 14 13 18 18 C 1.53003 * 109.46831 * 60.00100 * 17 16 14 19 19 O 1.42897 * 109.47192 * 300.00123 * 17 16 14 20 20 C 1.52999 * 109.46710 * 179.97438 * 17 16 14 21 21 C 1.53004 * 117.51566 * 111.28987 * 20 17 16 22 22 C 1.53000 * 60.00309 * 107.47803 * 21 20 17 23 23 H 1.08995 * 109.47239 * 274.20575 * 1 2 3 24 24 H 1.09007 * 109.47340 * 34.20874 * 1 2 3 25 25 H 1.09007 * 109.47213 * 154.20802 * 1 2 3 26 26 H 0.97000 * 120.00775 * 179.97438 * 6 5 3 27 27 H 1.08997 * 109.46750 * 150.00013 * 11 2 1 28 28 H 1.09001 * 109.47204 * 30.00213 * 11 2 1 29 29 H 1.08995 * 109.46855 * 60.00078 * 12 11 2 30 30 H 1.08991 * 109.47188 * 300.00076 * 12 11 2 31 31 H 0.97005 * 120.00433 * 359.97438 * 13 12 11 32 32 H 1.08997 * 109.46878 * 59.99573 * 16 14 13 33 33 H 1.09004 * 109.46536 * 299.99512 * 16 14 13 34 34 H 1.09006 * 109.46988 * 180.02562 * 18 17 16 35 35 H 1.09001 * 109.47309 * 299.99485 * 18 17 16 36 36 H 1.08991 * 109.47466 * 59.99887 * 18 17 16 37 37 H 0.96705 * 113.99308 * 299.99399 * 19 17 16 38 38 H 1.08993 * 115.55707 * 325.58122 * 20 17 16 39 39 H 1.09000 * 117.49712 * 214.97256 * 21 20 17 40 40 H 1.09003 * 117.49814 * 359.97438 * 21 20 17 41 41 H 1.09004 * 117.49775 * 252.51403 * 22 21 20 42 42 H 1.08997 * 117.52137 * 107.48183 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1689 1.2210 -0.3556 5 6 1.5338 2.3428 0.4571 6 7 0.3841 2.2690 1.0937 7 14 2.3367 4.0047 0.1689 8 1 1.8679 4.5632 -1.1248 9 1 1.9682 4.9302 1.2702 10 1 3.8123 3.8418 0.1321 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7111 1.4417 13 7 3.1854 -2.9795 1.4411 14 6 3.5220 -3.5639 2.6080 15 8 3.2185 -3.0395 3.6586 16 6 4.2766 -4.8684 2.6075 17 6 4.5315 -5.3108 4.0498 18 6 3.1944 -5.4952 4.7704 19 8 5.3027 -4.3147 4.7243 20 6 5.2969 -6.6355 4.0491 21 6 6.7452 -6.6153 4.5420 22 6 5.6519 -7.2470 5.4060 23 1 -0.3633 0.0754 1.0248 24 1 -0.3634 0.8499 -0.5778 25 1 -0.3634 -0.9253 -0.4472 26 1 -0.0461 3.0775 1.4134 27 1 3.1498 -1.1382 -0.5143 28 1 1.6084 -2.0282 -0.5148 29 1 1.5001 -1.8416 1.9554 30 1 3.0415 -0.9518 1.9559 31 1 3.4279 -3.3992 0.6008 32 1 5.2292 -4.7369 2.0944 33 1 3.6883 -5.6281 2.0926 34 1 3.3760 -5.8100 5.7981 35 1 2.6487 -4.5517 4.7709 36 1 2.6061 -6.2549 4.2560 37 1 6.1653 -4.1454 4.3211 38 1 5.0511 -7.3202 3.2375 39 1 7.4522 -7.2866 4.0545 40 1 7.1531 -5.6580 4.8665 41 1 5.3404 -6.7052 6.2991 42 1 5.6392 -8.3339 5.4871 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663166239.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:03 Heat of formation + Delta-G solvation = -39.869596 kcal Electronic energy + Delta-G solvation = -21053.790386 eV Core-core repulsion = 17842.620441 eV Total energy + Delta-G solvation = -3211.169945 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.11965 -38.46097 -36.03606 -35.10363 -34.02202 -32.14491 -31.27500 -28.87795 -27.18929 -25.84534 -24.06802 -22.83433 -22.52154 -20.61655 -20.14729 -19.86568 -17.38185 -16.75868 -16.32282 -16.23976 -15.44962 -15.03483 -14.76705 -14.47288 -14.18996 -13.62819 -13.36698 -13.22803 -12.82085 -12.52202 -12.30572 -12.18517 -11.91059 -11.75640 -11.51972 -11.15479 -11.10578 -10.86898 -10.82678 -10.72815 -10.57324 -10.30646 -10.21788 -10.04623 -9.97511 -9.88489 -9.26669 -8.57881 -8.50515 -6.81242 -5.73327 -3.20723 2.99266 3.37841 3.42479 3.45609 3.47165 3.55954 4.18969 4.43865 4.51397 4.56830 4.68468 4.80428 5.00031 5.10768 5.24689 5.38308 5.41584 5.42101 5.60633 5.65549 5.67692 5.75525 5.89100 5.90073 5.97847 5.99954 6.08000 6.29234 6.46976 6.71862 6.75286 6.82370 7.04005 7.37381 7.67317 7.72691 7.80864 7.90004 8.38094 8.64608 9.22023 9.84076 10.32180 11.31765 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.034575 B = 0.003334 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.647414 B = 8396.828281 C = 8640.835576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.597 5.597 3 C -0.260 4.260 4 H 0.070 0.930 5 C 0.003 3.997 6 N -0.906 5.906 7 Si 0.908 3.092 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.279 1.279 11 C 0.145 3.855 12 C 0.096 3.904 13 N -0.730 5.730 14 C 0.504 3.496 15 O -0.520 6.520 16 C -0.167 4.167 17 C 0.181 3.819 18 C -0.149 4.149 19 O -0.538 6.538 20 C -0.186 4.186 21 C -0.180 4.180 22 C -0.167 4.167 23 H 0.029 0.971 24 H 0.047 0.953 25 H -0.003 1.003 26 H 0.254 0.746 27 H 0.047 0.953 28 H 0.041 0.959 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.392 0.608 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.057 0.943 35 H 0.094 0.906 36 H 0.060 0.940 37 H 0.366 0.634 38 H 0.108 0.892 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.098 0.902 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.541 -19.797 2.084 22.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.320 5.320 3 C -0.390 4.390 4 H 0.088 0.912 5 C -0.195 4.195 6 N -0.550 5.550 7 Si 0.737 3.263 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.016 3.984 12 C -0.030 4.030 13 N -0.382 5.382 14 C 0.289 3.711 15 O -0.395 6.395 16 C -0.208 4.208 17 C 0.139 3.861 18 C -0.206 4.206 19 O -0.343 6.343 20 C -0.204 4.204 21 C -0.217 4.217 22 C -0.204 4.204 23 H 0.048 0.952 24 H 0.066 0.934 25 H 0.016 0.984 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.225 0.775 32 H 0.110 0.890 33 H 0.115 0.885 34 H 0.076 0.924 35 H 0.112 0.888 36 H 0.079 0.921 37 H 0.213 0.787 38 H 0.126 0.874 39 H 0.111 0.889 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.638 -19.210 3.295 21.319 hybrid contribution 1.023 0.602 -0.900 1.490 sum 9.661 -18.608 2.395 21.103 Atomic orbital electron populations 1.20847 0.82178 0.95706 0.99480 1.43923 1.02061 1.00374 1.85613 1.19226 0.98137 0.85241 1.36373 0.91224 1.25069 0.97670 0.98696 0.98096 1.70066 1.17805 1.27232 1.39936 0.86210 0.78838 0.83892 0.77312 1.21450 1.21655 1.20447 1.20984 0.96240 0.88864 0.92305 1.22459 0.95670 0.82985 1.01873 1.46237 1.58684 1.25400 1.07838 1.20383 0.80124 0.86335 0.84231 1.90695 1.53684 1.64421 1.30750 1.22419 1.01932 0.96874 0.99566 1.20310 0.91706 0.84477 0.89577 1.21963 0.94617 1.04049 0.99928 1.86740 1.32351 1.59207 1.55977 1.23133 0.98201 1.00033 0.99049 1.22980 0.91240 1.03163 1.04304 1.22877 1.02984 0.99853 0.94724 0.95225 0.93433 0.98426 0.93620 0.93441 0.94094 0.92366 0.91468 0.77484 0.88994 0.88466 0.92392 0.88757 0.92123 0.78670 0.87375 0.88949 0.88197 0.88315 0.89052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.04 9.01 59.85 0.54 4.58 16 2 N -0.60 -15.06 2.93 -181.12 -0.53 -15.59 16 3 C -0.26 -7.19 9.67 -15.06 -0.15 -7.33 16 4 H 0.07 1.87 7.84 -52.48 -0.41 1.46 16 5 C 0.00 0.10 5.13 -17.43 -0.09 0.01 16 6 N -0.91 -26.77 10.58 55.49 0.59 -26.18 16 7 Si 0.91 22.08 29.57 -169.99 -5.03 17.06 16 8 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 9 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 C 0.14 2.87 5.82 -4.04 -0.02 2.84 16 12 C 0.10 1.89 6.00 -4.04 -0.02 1.86 16 13 N -0.73 -10.84 5.56 -60.30 -0.33 -11.17 16 14 C 0.50 7.71 7.39 -10.98 -0.08 7.63 16 15 O -0.52 -10.39 12.96 -12.71 -0.16 -10.55 16 16 C -0.17 -1.72 4.93 -27.88 -0.14 -1.86 16 17 C 0.18 1.99 0.79 -90.62 -0.07 1.92 16 18 C -0.15 -1.86 8.36 37.16 0.31 -1.55 16 19 O -0.54 -6.99 11.03 -53.50 -0.59 -7.58 16 20 C -0.19 -1.56 5.15 -90.61 -0.47 -2.02 16 21 C -0.18 -1.36 9.74 -26.73 -0.26 -1.62 16 22 C -0.17 -1.39 9.67 -26.73 -0.26 -1.65 16 23 H 0.03 0.80 7.42 -51.93 -0.39 0.41 16 24 H 0.05 1.26 7.19 -51.93 -0.37 0.89 16 25 H 0.00 -0.06 7.84 -51.92 -0.41 -0.47 16 26 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 27 H 0.05 0.89 8.03 -51.93 -0.42 0.48 16 28 H 0.04 0.72 7.86 -51.93 -0.41 0.31 16 29 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 30 H 0.07 1.56 8.14 -51.93 -0.42 1.13 16 31 H 0.39 4.41 8.47 -40.82 -0.35 4.06 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.70 7.29 -51.93 -0.38 0.32 16 35 H 0.09 1.51 5.51 -51.93 -0.29 1.23 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.37 3.55 7.56 45.56 0.34 3.89 16 38 H 0.11 0.77 8.11 -51.93 -0.42 0.35 16 39 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.10 0.76 6.38 -51.93 -0.33 0.43 16 41 H 0.10 0.93 7.61 -51.93 -0.40 0.54 16 42 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 338.05 15.07 5.09 5.09 Total: -1.00 -33.55 338.05 -7.98 -41.53 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -6.31 Total: 4.58 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -0.71 Total: 2.81 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: -0.28 Total: -52.94 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -0.76 Total: -18.14 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.06 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.55 -7.98 -41.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663166239.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.665 kcal (2) G-P(sol) polarization free energy of solvation -33.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds