Wall clock time and date at job start Mon Mar 30 2020 01:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36935 * 120.00006 * 2 1 4 4 H 1.08007 * 120.00083 * 202.34423 * 3 2 1 5 5 C 1.38806 * 119.99873 * 22.35051 * 3 2 1 6 6 N 1.31618 * 120.00556 * 11.34027 * 5 3 2 7 7 Si 1.86803 * 119.99904 * 191.34073 * 5 3 2 8 8 H 1.48506 * 109.47160 * 89.99908 * 7 5 3 9 9 H 1.48500 * 109.47308 * 209.99744 * 7 5 3 10 10 H 1.48498 * 109.47146 * 329.99972 * 7 5 3 11 11 C 1.46504 * 119.99834 * 180.02562 * 2 1 3 12 12 C 1.53000 * 109.47095 * 269.99946 * 11 2 1 13 13 N 1.46497 * 109.46848 * 180.02562 * 12 11 2 14 14 C 1.34775 * 120.00049 * 180.02562 * 13 12 11 15 15 O 1.21281 * 120.00154 * 359.97438 * 14 13 12 16 16 C 1.50703 * 120.00465 * 180.02562 * 14 13 12 17 17 C 1.53000 * 109.47264 * 179.97438 * 16 14 13 18 18 C 1.53003 * 109.46831 * 60.00100 * 17 16 14 19 19 O 1.42897 * 109.47192 * 300.00123 * 17 16 14 20 20 C 1.52999 * 109.46710 * 179.97438 * 17 16 14 21 21 C 1.53004 * 117.51566 * 111.28987 * 20 17 16 22 22 C 1.53000 * 60.00309 * 107.47803 * 21 20 17 23 23 H 1.08995 * 109.47239 * 274.20575 * 1 2 3 24 24 H 1.09007 * 109.47340 * 34.20874 * 1 2 3 25 25 H 1.09007 * 109.47213 * 154.20802 * 1 2 3 26 26 H 0.97000 * 120.00775 * 179.97438 * 6 5 3 27 27 H 1.08997 * 109.46750 * 150.00013 * 11 2 1 28 28 H 1.09001 * 109.47204 * 30.00213 * 11 2 1 29 29 H 1.08995 * 109.46855 * 60.00078 * 12 11 2 30 30 H 1.08991 * 109.47188 * 300.00076 * 12 11 2 31 31 H 0.97005 * 120.00433 * 359.97438 * 13 12 11 32 32 H 1.08997 * 109.46878 * 59.99573 * 16 14 13 33 33 H 1.09004 * 109.46536 * 299.99512 * 16 14 13 34 34 H 1.09006 * 109.46988 * 180.02562 * 18 17 16 35 35 H 1.09001 * 109.47309 * 299.99485 * 18 17 16 36 36 H 1.08991 * 109.47466 * 59.99887 * 18 17 16 37 37 H 0.96705 * 113.99308 * 299.99399 * 19 17 16 38 38 H 1.08993 * 115.55707 * 325.58122 * 20 17 16 39 39 H 1.09000 * 117.49712 * 214.97256 * 21 20 17 40 40 H 1.09003 * 117.49814 * 359.97438 * 21 20 17 41 41 H 1.09004 * 117.49775 * 252.51403 * 22 21 20 42 42 H 1.08997 * 117.52137 * 107.48183 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1689 1.2210 -0.3556 5 6 1.5338 2.3428 0.4571 6 7 0.3841 2.2690 1.0937 7 14 2.3367 4.0047 0.1689 8 1 1.8679 4.5632 -1.1248 9 1 1.9682 4.9302 1.2702 10 1 3.8123 3.8418 0.1321 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7111 1.4417 13 7 3.1854 -2.9795 1.4411 14 6 3.5220 -3.5639 2.6080 15 8 3.2185 -3.0395 3.6586 16 6 4.2766 -4.8684 2.6075 17 6 4.5315 -5.3108 4.0498 18 6 3.1944 -5.4952 4.7704 19 8 5.3027 -4.3147 4.7243 20 6 5.2969 -6.6355 4.0491 21 6 6.7452 -6.6153 4.5420 22 6 5.6519 -7.2470 5.4060 23 1 -0.3633 0.0754 1.0248 24 1 -0.3634 0.8499 -0.5778 25 1 -0.3634 -0.9253 -0.4472 26 1 -0.0461 3.0775 1.4134 27 1 3.1498 -1.1382 -0.5143 28 1 1.6084 -2.0282 -0.5148 29 1 1.5001 -1.8416 1.9554 30 1 3.0415 -0.9518 1.9559 31 1 3.4279 -3.3992 0.6008 32 1 5.2292 -4.7369 2.0944 33 1 3.6883 -5.6281 2.0926 34 1 3.3760 -5.8100 5.7981 35 1 2.6487 -4.5517 4.7709 36 1 2.6061 -6.2549 4.2560 37 1 6.1653 -4.1454 4.3211 38 1 5.0511 -7.3202 3.2375 39 1 7.4522 -7.2866 4.0545 40 1 7.1531 -5.6580 4.8665 41 1 5.3404 -6.7052 6.2991 42 1 5.6392 -8.3339 5.4871 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663166239.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:03 Heat of formation + Delta-G solvation = -64.023129 kcal Electronic energy + Delta-G solvation = -21054.837761 eV Core-core repulsion = 17842.620441 eV Total energy + Delta-G solvation = -3212.217320 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.16920 -39.49231 -37.81478 -35.96455 -35.55030 -33.37888 -32.95164 -30.30718 -28.46988 -27.90415 -25.32420 -24.20546 -23.11347 -22.36504 -21.34379 -20.77941 -18.81637 -18.29704 -17.45211 -17.18127 -16.75845 -16.62319 -16.19376 -15.71909 -15.38084 -15.16011 -14.86938 -14.52878 -14.25006 -14.05227 -13.62208 -13.18325 -13.13074 -12.82247 -12.79287 -12.66062 -12.60945 -12.45996 -12.26428 -12.07442 -12.00664 -11.90259 -11.74768 -11.34074 -11.09541 -10.82850 -10.67904 -10.48003 -9.95162 -8.87099 -7.85813 -5.35550 1.45882 1.47010 1.55956 1.80113 2.25013 2.52219 2.88380 3.29529 3.37724 3.66661 3.69774 3.84643 4.02350 4.10535 4.23230 4.27732 4.31538 4.44283 4.45369 4.64600 4.67075 4.81830 4.83457 4.84763 4.93864 5.00497 5.07945 5.12518 5.20642 5.30603 5.31370 5.32640 5.42757 5.59205 5.65706 5.71385 6.30212 6.73447 6.92358 7.11863 7.47464 7.82952 8.25152 9.17984 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.034575 B = 0.003334 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.647414 B = 8396.828281 C = 8640.835576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.616 5.616 3 C -0.266 4.266 4 H 0.077 0.923 5 C -0.056 4.056 6 N -0.940 5.940 7 Si 0.972 3.028 8 H -0.281 1.281 9 H -0.298 1.298 10 H -0.267 1.267 11 C 0.147 3.853 12 C 0.118 3.882 13 N -0.716 5.716 14 C 0.498 3.502 15 O -0.573 6.573 16 C -0.154 4.154 17 C 0.175 3.825 18 C -0.150 4.150 19 O -0.567 6.567 20 C -0.179 4.179 21 C -0.172 4.172 22 C -0.178 4.178 23 H -0.003 1.003 24 H 0.022 0.978 25 H 0.036 0.964 26 H 0.248 0.752 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.028 0.972 30 H 0.023 0.977 31 H 0.416 0.584 32 H 0.124 0.876 33 H 0.131 0.869 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.082 0.918 37 H 0.378 0.622 38 H 0.132 0.868 39 H 0.111 0.889 40 H 0.095 0.905 41 H 0.078 0.922 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.523 -22.209 0.138 25.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.339 5.339 3 C -0.397 4.397 4 H 0.094 0.906 5 C -0.251 4.251 6 N -0.587 5.587 7 Si 0.800 3.200 8 H -0.208 1.208 9 H -0.225 1.225 10 H -0.192 1.192 11 C 0.020 3.980 12 C -0.009 4.009 13 N -0.369 5.369 14 C 0.286 3.714 15 O -0.452 6.452 16 C -0.194 4.194 17 C 0.134 3.866 18 C -0.207 4.207 19 O -0.374 6.374 20 C -0.197 4.197 21 C -0.208 4.208 22 C -0.215 4.215 23 H 0.015 0.985 24 H 0.041 0.959 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.046 0.954 30 H 0.042 0.958 31 H 0.252 0.748 32 H 0.142 0.858 33 H 0.149 0.851 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.101 0.899 37 H 0.227 0.773 38 H 0.150 0.850 39 H 0.130 0.870 40 H 0.113 0.887 41 H 0.096 0.904 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 10.669 -21.681 1.301 24.199 hybrid contribution 0.419 1.264 -0.255 1.355 sum 11.088 -20.417 1.046 23.257 Atomic orbital electron populations 1.20598 0.82500 0.96497 0.97413 1.44189 1.02368 1.01697 1.85669 1.19612 0.98382 0.86428 1.35231 0.90559 1.25885 0.98468 1.02242 0.98539 1.70251 1.19357 1.27548 1.41534 0.85196 0.78466 0.79512 0.76850 1.20790 1.22518 1.19175 1.21136 0.97059 0.87481 0.92288 1.21807 0.93986 0.84248 1.00902 1.45959 1.58003 1.23679 1.09296 1.21376 0.79335 0.87598 0.83104 1.90701 1.55633 1.66155 1.32727 1.22436 1.03013 0.94126 0.99776 1.20399 0.91037 0.85599 0.89519 1.21942 0.95779 1.02414 1.00542 1.86716 1.33385 1.60220 1.57075 1.23020 0.98379 0.98639 0.99686 1.23055 0.91082 1.03203 1.03505 1.22905 1.03850 1.00595 0.94114 0.98479 0.95933 0.94525 0.94306 0.91730 0.90695 0.95370 0.95812 0.74757 0.85778 0.85078 0.92890 0.92834 0.89945 0.77320 0.84977 0.87037 0.88692 0.90369 0.87515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.77 9.01 127.77 1.15 9.92 16 2 N -0.62 -30.92 2.93 -726.92 -2.13 -33.05 16 3 C -0.27 -14.72 9.67 84.03 0.81 -13.91 16 4 H 0.08 4.03 7.84 -2.91 -0.02 4.01 16 5 C -0.06 -3.23 5.13 84.86 0.44 -2.79 16 6 N -0.94 -57.33 10.58 21.65 0.23 -57.10 16 7 Si 0.97 45.90 29.57 68.60 2.03 47.93 16 8 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 9 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 11 C 0.15 5.58 5.82 86.38 0.50 6.08 16 12 C 0.12 4.66 6.00 86.38 0.52 5.18 16 13 N -0.72 -19.97 5.56 -463.08 -2.57 -22.55 16 14 C 0.50 14.66 7.39 87.66 0.65 15.31 16 15 O -0.57 -23.62 12.96 14.43 0.19 -23.43 16 16 C -0.15 -2.63 4.93 29.85 0.15 -2.48 16 17 C 0.18 3.54 0.79 -10.79 -0.01 3.53 16 18 C -0.15 -3.69 8.36 71.98 0.60 -3.09 16 19 O -0.57 -14.48 11.03 -131.51 -1.45 -15.93 16 20 C -0.18 -2.41 5.15 -10.79 -0.06 -2.47 16 21 C -0.17 -2.09 9.74 30.60 0.30 -1.79 16 22 C -0.18 -2.58 9.67 30.60 0.30 -2.28 16 23 H 0.00 -0.18 7.42 -2.39 -0.02 -0.20 16 24 H 0.02 1.20 7.19 -2.38 -0.02 1.18 16 25 H 0.04 1.51 7.84 -2.38 -0.02 1.49 16 26 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 27 H 0.06 2.25 8.03 -2.39 -0.02 2.23 16 28 H 0.07 2.36 7.86 -2.39 -0.02 2.34 16 29 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.42 7.78 8.47 -92.70 -0.79 7.00 16 32 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.05 1.30 7.29 -2.38 -0.02 1.28 16 35 H 0.05 1.79 5.51 -2.39 -0.01 1.78 16 36 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.38 6.92 7.56 -74.05 -0.56 6.36 16 38 H 0.13 1.20 8.11 -2.39 -0.02 1.18 16 39 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.09 1.25 6.38 -2.39 -0.02 1.24 16 41 H 0.08 1.46 7.61 -2.38 -0.02 1.44 16 42 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -77.19 338.05 1.31 -75.88 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -0.33 Total: 17.06 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: 5.35 Total: 11.20 kcal Atomic # 7 Polarization: -108.23 SS G_CDS: -4.47 Total: -112.70 kcal Atomic # 8 Polarization: -38.10 SS G_CDS: -1.26 Total: -39.36 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -77.19 1.31 -75.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663166239.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.860 kcal (2) G-P(sol) polarization free energy of solvation -77.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds