Wall clock time and date at job start Mon Mar 30 2020 02:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.46810 * 2 1 4 4 C 1.42900 * 113.99944 * 174.92928 * 3 2 1 5 5 H 1.09005 * 109.47123 * 356.32921 * 4 3 2 6 6 C 1.53001 * 109.47385 * 116.32927 * 4 3 2 7 7 C 1.53001 * 109.47022 * 298.20603 * 6 4 3 8 8 C 1.50699 * 109.47328 * 236.33031 * 4 3 2 9 9 O 1.21279 * 119.99727 * 350.82219 * 8 4 3 10 10 N 1.34769 * 120.00161 * 170.81951 * 8 4 3 11 11 C 1.46502 * 120.00071 * 184.76277 * 10 8 4 12 12 C 1.52999 * 109.47365 * 185.04786 * 11 10 8 13 13 N 1.46504 * 115.54798 * 269.94458 * 12 11 10 14 14 C 1.36940 * 119.99678 * 296.44535 * 13 12 11 15 15 H 1.08001 * 120.00098 * 4.98920 * 14 13 12 16 16 C 1.38807 * 120.00041 * 184.98416 * 14 13 12 17 17 N 1.31617 * 120.00075 * 5.43889 * 16 14 13 18 18 Si 1.86800 * 120.00119 * 185.43342 * 16 14 13 19 19 H 1.48494 * 109.47270 * 5.00892 * 18 16 14 20 20 H 1.48501 * 109.47338 * 125.01358 * 18 16 14 21 21 H 1.48503 * 109.47042 * 245.01216 * 18 16 14 22 22 C 1.53001 * 117.50321 * 124.27334 * 12 11 10 23 23 C 1.52995 * 117.50010 * 55.60933 * 12 11 10 24 24 H 1.08993 * 109.47726 * 60.00170 * 1 2 3 25 25 H 1.09000 * 109.47178 * 299.99503 * 1 2 3 26 26 H 1.09012 * 109.46975 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47504 * 120.00343 * 2 1 3 28 28 H 1.09007 * 109.46949 * 240.00186 * 2 1 3 29 29 H 1.09000 * 109.47381 * 58.20083 * 6 4 3 30 30 H 1.08995 * 109.47406 * 178.20228 * 6 4 3 31 31 H 1.09001 * 109.46891 * 304.33436 * 7 6 4 32 32 H 1.08996 * 109.47726 * 64.33678 * 7 6 4 33 33 H 1.08999 * 109.47272 * 184.34455 * 7 6 4 34 34 H 0.97000 * 120.00168 * 4.77043 * 10 8 4 35 35 H 1.09005 * 109.46982 * 305.04320 * 11 10 8 36 36 H 1.09000 * 109.47266 * 65.04076 * 11 10 8 37 37 H 0.96993 * 120.00567 * 116.44986 * 13 12 11 38 38 H 0.97004 * 120.00527 * 179.97438 * 17 16 14 39 39 H 1.09000 * 117.49301 * 359.97438 * 22 12 11 40 40 H 1.08996 * 117.50311 * 145.02135 * 22 12 11 41 41 H 1.09002 * 117.49945 * 214.97755 * 23 12 11 42 42 H 1.09003 * 117.49939 * 359.97438 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4260 1.4619 0.1154 5 1 3.8610 0.4711 0.2471 6 6 3.9909 2.1022 -1.1542 7 6 3.6850 1.2067 -2.3565 8 6 3.7655 2.3218 1.3055 9 8 2.8890 2.9250 1.8875 10 7 5.0431 2.4205 1.7230 11 6 5.3599 3.1712 2.9405 12 6 6.8780 3.2347 3.1201 13 7 7.4687 2.1410 3.8955 14 6 7.1368 1.9797 5.2143 15 1 6.3800 2.6073 5.6613 16 6 7.7729 1.0095 5.9764 17 7 8.7681 0.3176 5.4635 18 14 7.2164 0.6859 7.7300 19 1 6.0119 1.5024 8.0258 20 1 6.8893 -0.7541 7.8878 21 1 8.3058 1.0519 8.6705 22 6 7.5168 4.6188 3.2508 23 6 7.7026 3.8079 1.9658 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 1.8934 -0.5139 0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 3.5322 3.0796 -1.3033 30 1 5.0699 2.2188 -1.0532 31 1 4.0775 0.2064 -2.1736 32 1 2.6065 1.1524 -2.5041 33 1 4.1533 1.6232 -3.2483 34 1 5.7529 1.9946 1.2173 35 1 4.9613 4.1824 2.8579 36 1 4.9127 2.6736 3.8009 37 1 8.0950 1.5313 3.4750 38 1 9.2129 -0.3602 5.9962 39 1 6.8555 5.4842 3.2084 40 1 8.3768 4.7157 3.9134 41 1 8.6848 3.3717 1.7838 42 1 7.1636 4.1394 1.0783 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733239708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:32 Heat of formation + Delta-G solvation = -57.005707 kcal Electronic energy + Delta-G solvation = -21222.813989 eV Core-core repulsion = 18010.900966 eV Total energy + Delta-G solvation = -3211.913022 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.88324 -38.09452 -37.16373 -34.12387 -33.45553 -32.96895 -31.04159 -29.74178 -28.10167 -25.59213 -23.91136 -22.92631 -22.25634 -21.81146 -20.06307 -19.19924 -17.35630 -17.13041 -16.95920 -15.97040 -15.43495 -15.17196 -14.65548 -14.33658 -14.26302 -13.93851 -13.87169 -13.32075 -13.10810 -12.58474 -12.56094 -12.38981 -12.04732 -11.94581 -11.91298 -11.47294 -11.29342 -11.07496 -10.97264 -10.93609 -10.86498 -10.29814 -10.24094 -10.11412 -9.72847 -9.45672 -9.19687 -8.81809 -8.62931 -7.09276 -5.86245 -3.16512 2.86249 3.08564 3.39346 3.46502 3.48488 3.83963 4.40056 4.57148 4.70380 4.71533 4.89572 4.96344 5.04473 5.13482 5.21638 5.23654 5.28373 5.37751 5.45337 5.49425 5.57044 5.63319 5.74627 5.78914 5.80288 5.88078 6.01442 6.05053 6.07018 6.23384 6.42274 6.55892 6.65740 6.76606 6.81416 7.03963 7.68066 7.84549 8.32033 8.52146 9.43082 9.96554 10.31988 11.35495 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.017771 B = 0.004580 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.226772 B = 6111.514098 C = 6924.304170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.355 6.355 4 C 0.075 3.925 5 H 0.087 0.913 6 C -0.129 4.129 7 C -0.150 4.150 8 C 0.498 3.502 9 O -0.530 6.530 10 N -0.713 5.713 11 C 0.147 3.853 12 C 0.129 3.871 13 N -0.689 5.689 14 C -0.239 4.239 15 H 0.073 0.927 16 C -0.009 4.009 17 N -0.931 5.931 18 Si 0.907 3.093 19 H -0.278 1.278 20 H -0.291 1.291 21 H -0.291 1.291 22 C -0.188 4.188 23 C -0.186 4.186 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.399 0.601 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.387 0.613 38 H 0.255 0.745 39 H 0.082 0.918 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.872 0.748 -15.481 17.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.024 4.024 3 O -0.273 6.273 4 C 0.013 3.987 5 H 0.105 0.895 6 C -0.167 4.167 7 C -0.207 4.207 8 C 0.283 3.717 9 O -0.406 6.406 10 N -0.365 5.365 11 C 0.021 3.979 12 C 0.034 3.966 13 N -0.328 5.328 14 C -0.370 4.370 15 H 0.091 0.909 16 C -0.205 4.205 17 N -0.578 5.578 18 Si 0.737 3.263 19 H -0.204 1.204 20 H -0.218 1.218 21 H -0.218 1.218 22 C -0.228 4.228 23 C -0.224 4.224 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.233 0.767 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.222 0.778 38 H 0.065 0.935 39 H 0.101 0.899 40 H 0.114 0.886 41 H 0.110 0.890 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.700 1.301 -14.846 17.782 hybrid contribution 0.631 -0.894 0.741 1.321 sum -9.070 0.407 -14.105 16.774 Atomic orbital electron populations 1.21722 0.93624 1.02079 1.03291 1.22653 0.95894 0.83745 1.00086 1.88010 1.19114 1.26238 1.93890 1.22034 0.83723 0.99274 0.93692 0.89501 1.21810 1.00981 1.00553 0.93359 1.21739 1.02257 0.99321 0.97379 1.20772 0.82915 0.82648 0.85396 1.90688 1.47306 1.45296 1.57290 1.45983 1.07639 1.54893 1.28009 1.21296 0.94755 0.95405 0.86399 1.20173 0.89560 0.90096 0.96723 1.41805 1.52455 1.30246 1.08338 1.19223 1.16673 1.14914 0.86163 0.90862 1.24747 0.97909 0.99486 0.98397 1.69687 1.24287 1.26900 1.36955 0.86124 0.77974 0.77640 0.84520 1.20356 1.21777 1.21789 1.23405 1.04072 0.95727 0.99628 1.23072 1.01582 1.05431 0.92313 0.91922 0.91604 0.91182 0.93181 0.93235 0.90510 0.90272 0.92748 0.92071 0.92244 0.76710 0.91976 0.90432 0.77794 0.93470 0.89938 0.88616 0.88975 0.89451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 10.28 37.16 0.38 -1.03 16 2 C 0.05 0.57 6.37 37.16 0.24 0.81 16 3 O -0.35 -4.93 9.01 -54.97 -0.50 -5.43 16 4 C 0.07 0.95 2.68 -27.88 -0.07 0.87 16 5 H 0.09 0.95 7.59 -51.93 -0.39 0.56 16 6 C -0.13 -1.30 5.64 -26.73 -0.15 -1.45 16 7 C -0.15 -1.23 9.66 37.16 0.36 -0.87 16 8 C 0.50 8.22 7.14 -10.99 -0.08 8.14 16 9 O -0.53 -11.04 16.50 -14.18 -0.23 -11.27 16 10 N -0.71 -11.16 5.40 -60.29 -0.33 -11.48 16 11 C 0.15 2.70 5.84 -4.04 -0.02 2.67 16 12 C 0.13 2.44 2.27 -131.82 -0.30 2.14 16 13 N -0.69 -16.36 5.49 -47.23 -0.26 -16.62 16 14 C -0.24 -6.42 9.44 -15.06 -0.14 -6.56 16 15 H 0.07 1.96 7.77 -52.49 -0.41 1.55 16 16 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 17 N -0.93 -27.21 13.08 55.49 0.73 -26.49 16 18 Si 0.91 22.15 29.56 -169.99 -5.02 17.13 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 C -0.19 -3.25 10.11 -26.69 -0.27 -3.52 16 23 C -0.19 -2.89 9.74 -26.69 -0.26 -3.15 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 27 H 0.05 0.55 8.12 -51.93 -0.42 0.13 16 28 H 0.05 0.43 8.07 -51.93 -0.42 0.01 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.08 0.69 8.07 -51.93 -0.42 0.27 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.53 7.86 -51.93 -0.41 0.13 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.40 5.38 8.17 -40.82 -0.33 5.04 16 35 H 0.06 1.11 7.84 -51.93 -0.41 0.71 16 36 H 0.08 1.66 7.59 -51.93 -0.39 1.27 16 37 H 0.39 9.73 8.07 -40.82 -0.33 9.40 16 38 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.08 1.28 8.03 -51.93 -0.42 0.86 16 40 H 0.10 1.81 8.14 -51.93 -0.42 1.38 16 41 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 42 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 353.82 15.07 5.33 5.33 Total: -1.00 -32.01 353.82 -7.99 -40.00 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -7.29 Total: 11.14 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -0.42 Total: -2.32 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: 0.14 Total: -54.59 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -0.73 Total: -16.70 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.01 -7.99 -40.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733239708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.001 kcal (2) G-P(sol) polarization free energy of solvation -32.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds