Wall clock time and date at job start Mon Mar 30 2020 02:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.46810 * 2 1 4 4 C 1.42900 * 113.99944 * 174.92928 * 3 2 1 5 5 H 1.09005 * 109.47123 * 356.32921 * 4 3 2 6 6 C 1.53001 * 109.47385 * 116.32927 * 4 3 2 7 7 C 1.53001 * 109.47022 * 298.20603 * 6 4 3 8 8 C 1.50699 * 109.47328 * 236.33031 * 4 3 2 9 9 O 1.21279 * 119.99727 * 350.82219 * 8 4 3 10 10 N 1.34769 * 120.00161 * 170.81951 * 8 4 3 11 11 C 1.46502 * 120.00071 * 184.76277 * 10 8 4 12 12 C 1.52999 * 109.47365 * 185.04786 * 11 10 8 13 13 N 1.46504 * 115.54798 * 269.94458 * 12 11 10 14 14 C 1.36940 * 119.99678 * 296.44535 * 13 12 11 15 15 H 1.08001 * 120.00098 * 4.98920 * 14 13 12 16 16 C 1.38807 * 120.00041 * 184.98416 * 14 13 12 17 17 N 1.31617 * 120.00075 * 5.43889 * 16 14 13 18 18 Si 1.86800 * 120.00119 * 185.43342 * 16 14 13 19 19 H 1.48494 * 109.47270 * 5.00892 * 18 16 14 20 20 H 1.48501 * 109.47338 * 125.01358 * 18 16 14 21 21 H 1.48503 * 109.47042 * 245.01216 * 18 16 14 22 22 C 1.53001 * 117.50321 * 124.27334 * 12 11 10 23 23 C 1.52995 * 117.50010 * 55.60933 * 12 11 10 24 24 H 1.08993 * 109.47726 * 60.00170 * 1 2 3 25 25 H 1.09000 * 109.47178 * 299.99503 * 1 2 3 26 26 H 1.09012 * 109.46975 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47504 * 120.00343 * 2 1 3 28 28 H 1.09007 * 109.46949 * 240.00186 * 2 1 3 29 29 H 1.09000 * 109.47381 * 58.20083 * 6 4 3 30 30 H 1.08995 * 109.47406 * 178.20228 * 6 4 3 31 31 H 1.09001 * 109.46891 * 304.33436 * 7 6 4 32 32 H 1.08996 * 109.47726 * 64.33678 * 7 6 4 33 33 H 1.08999 * 109.47272 * 184.34455 * 7 6 4 34 34 H 0.97000 * 120.00168 * 4.77043 * 10 8 4 35 35 H 1.09005 * 109.46982 * 305.04320 * 11 10 8 36 36 H 1.09000 * 109.47266 * 65.04076 * 11 10 8 37 37 H 0.96993 * 120.00567 * 116.44986 * 13 12 11 38 38 H 0.97004 * 120.00527 * 179.97438 * 17 16 14 39 39 H 1.09000 * 117.49301 * 359.97438 * 22 12 11 40 40 H 1.08996 * 117.50311 * 145.02135 * 22 12 11 41 41 H 1.09002 * 117.49945 * 214.97755 * 23 12 11 42 42 H 1.09003 * 117.49939 * 359.97438 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4260 1.4619 0.1154 5 1 3.8610 0.4711 0.2471 6 6 3.9909 2.1022 -1.1542 7 6 3.6850 1.2067 -2.3565 8 6 3.7655 2.3218 1.3055 9 8 2.8890 2.9250 1.8875 10 7 5.0431 2.4205 1.7230 11 6 5.3599 3.1712 2.9405 12 6 6.8780 3.2347 3.1201 13 7 7.4687 2.1410 3.8955 14 6 7.1368 1.9797 5.2143 15 1 6.3800 2.6073 5.6613 16 6 7.7729 1.0095 5.9764 17 7 8.7681 0.3176 5.4635 18 14 7.2164 0.6859 7.7300 19 1 6.0119 1.5024 8.0258 20 1 6.8893 -0.7541 7.8878 21 1 8.3058 1.0519 8.6705 22 6 7.5168 4.6188 3.2508 23 6 7.7026 3.8079 1.9658 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 1.8934 -0.5139 0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 3.5322 3.0796 -1.3033 30 1 5.0699 2.2188 -1.0532 31 1 4.0775 0.2064 -2.1736 32 1 2.6065 1.1524 -2.5041 33 1 4.1533 1.6232 -3.2483 34 1 5.7529 1.9946 1.2173 35 1 4.9613 4.1824 2.8579 36 1 4.9127 2.6736 3.8009 37 1 8.0950 1.5313 3.4750 38 1 9.2129 -0.3602 5.9962 39 1 6.8555 5.4842 3.2084 40 1 8.3768 4.7157 3.9134 41 1 8.6848 3.3717 1.7838 42 1 7.1636 4.1394 1.0783 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733239708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:31 Heat of formation + Delta-G solvation = -78.505699 kcal Electronic energy + Delta-G solvation = -21223.746298 eV Core-core repulsion = 18010.900966 eV Total energy + Delta-G solvation = -3212.845332 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.13201 -39.36770 -38.48368 -35.44710 -34.95280 -34.33928 -31.84167 -31.67517 -29.25929 -26.80758 -25.92710 -23.76153 -23.38677 -22.89703 -21.33153 -20.71062 -19.19576 -18.44553 -18.08595 -17.25670 -16.69363 -16.48614 -16.09793 -15.84910 -15.46954 -15.05526 -15.01868 -14.90336 -14.57857 -13.77382 -13.57514 -13.28993 -13.27172 -13.09701 -13.02550 -12.82045 -12.81223 -12.29412 -12.25299 -12.18098 -12.08971 -12.00951 -11.73618 -11.59127 -11.23045 -11.01359 -10.74038 -10.27096 -10.03975 -9.04404 -7.98116 -5.26490 1.44274 1.46175 1.55167 1.57027 1.93642 2.51130 2.81732 3.09542 3.36329 3.64365 3.69086 3.83694 3.86354 3.92230 4.17281 4.19678 4.29059 4.31038 4.36381 4.46673 4.56478 4.75688 4.80628 4.81908 4.86523 4.93050 5.01656 5.03391 5.10631 5.17067 5.18453 5.26409 5.37230 5.41209 5.45482 5.54132 6.10559 6.25433 6.60739 7.24194 7.31408 8.04414 8.28564 9.24176 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.017771 B = 0.004580 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.226772 B = 6111.514098 C = 6924.304170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.045 3.955 3 O -0.380 6.380 4 C 0.079 3.921 5 H 0.107 0.893 6 C -0.124 4.124 7 C -0.146 4.146 8 C 0.494 3.506 9 O -0.580 6.580 10 N -0.702 5.702 11 C 0.159 3.841 12 C 0.101 3.899 13 N -0.698 5.698 14 C -0.233 4.233 15 H 0.068 0.932 16 C -0.066 4.066 17 N -0.963 5.963 18 Si 0.963 3.037 19 H -0.273 1.273 20 H -0.293 1.293 21 H -0.291 1.291 22 C -0.188 4.188 23 C -0.149 4.149 24 H 0.066 0.934 25 H 0.045 0.955 26 H 0.093 0.907 27 H 0.043 0.957 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.097 0.903 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.412 0.588 35 H 0.068 0.932 36 H 0.039 0.961 37 H 0.378 0.622 38 H 0.251 0.749 39 H 0.104 0.896 40 H 0.077 0.923 41 H 0.094 0.906 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.955 0.773 -17.416 19.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.031 4.031 3 O -0.298 6.298 4 C 0.017 3.983 5 H 0.125 0.875 6 C -0.162 4.162 7 C -0.203 4.203 8 C 0.281 3.719 9 O -0.460 6.460 10 N -0.354 5.354 11 C 0.033 3.967 12 C 0.008 3.992 13 N -0.337 5.337 14 C -0.364 4.364 15 H 0.086 0.914 16 C -0.258 4.258 17 N -0.613 5.613 18 Si 0.792 3.208 19 H -0.198 1.198 20 H -0.221 1.221 21 H -0.218 1.218 22 C -0.228 4.228 23 C -0.187 4.187 24 H 0.085 0.915 25 H 0.064 0.936 26 H 0.112 0.888 27 H 0.061 0.939 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.115 0.885 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.248 0.752 35 H 0.086 0.914 36 H 0.057 0.943 37 H 0.212 0.788 38 H 0.060 0.940 39 H 0.122 0.878 40 H 0.096 0.904 41 H 0.113 0.887 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.786 1.348 -16.819 19.505 hybrid contribution 0.609 -0.845 1.299 1.665 sum -9.177 0.503 -15.519 18.037 Atomic orbital electron populations 1.21753 0.92885 1.03414 1.02517 1.22886 0.96641 0.82620 1.00973 1.87992 1.19781 1.28202 1.93861 1.22144 0.83732 0.99466 0.92946 0.87512 1.21826 1.01689 1.00070 0.92615 1.21717 1.02068 0.99583 0.96906 1.21608 0.82270 0.82171 0.85892 1.90661 1.48650 1.47503 1.59137 1.45873 1.08099 1.54384 1.27066 1.20954 0.94037 0.95451 0.86222 1.20327 0.89829 0.89744 0.99268 1.41829 1.52521 1.31626 1.07689 1.19447 1.15463 1.13912 0.87610 0.91374 1.25396 0.98605 1.00124 1.01723 1.69801 1.25650 1.27808 1.38035 0.85238 0.77569 0.77138 0.80822 1.19756 1.22051 1.21842 1.23404 1.03429 0.95353 1.00640 1.23161 1.01046 1.02301 0.92178 0.91475 0.93564 0.88804 0.93866 0.90616 0.91779 0.88500 0.91605 0.92726 0.90813 0.75153 0.91421 0.94296 0.78837 0.93974 0.87801 0.90435 0.88723 0.86123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 10.28 71.98 0.74 -1.89 16 2 C 0.04 0.90 6.37 71.98 0.46 1.36 16 3 O -0.38 -10.21 9.01 -130.10 -1.17 -11.39 16 4 C 0.08 1.87 2.68 29.85 0.08 1.95 16 5 H 0.11 2.09 7.59 -2.38 -0.02 2.07 16 6 C -0.12 -2.18 5.64 30.60 0.17 -2.01 16 7 C -0.15 -1.95 9.66 71.98 0.70 -1.25 16 8 C 0.49 15.99 7.14 87.66 0.63 16.61 16 9 O -0.58 -24.51 16.50 15.85 0.26 -24.24 16 10 N -0.70 -21.12 5.40 -463.07 -2.50 -23.62 16 11 C 0.16 5.79 5.84 86.38 0.50 6.30 16 12 C 0.10 3.71 2.27 3.60 0.01 3.72 16 13 N -0.70 -33.19 5.49 -303.35 -1.67 -34.85 16 14 C -0.23 -12.62 9.44 84.03 0.79 -11.82 16 15 H 0.07 3.70 7.77 -2.91 -0.02 3.68 16 16 C -0.07 -3.69 5.50 84.86 0.47 -3.23 16 17 N -0.96 -57.00 13.08 21.65 0.28 -56.72 16 18 Si 0.96 46.09 29.56 68.60 2.03 48.12 16 19 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 20 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 21 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 22 C -0.19 -6.18 10.11 30.62 0.31 -5.87 16 23 C -0.15 -4.20 9.74 30.62 0.30 -3.90 16 24 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 27 H 0.04 0.91 8.12 -2.39 -0.02 0.89 16 28 H 0.08 1.12 8.07 -2.38 -0.02 1.10 16 29 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.10 1.34 8.07 -2.39 -0.02 1.33 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.05 0.81 7.86 -2.39 -0.02 0.79 16 33 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.41 10.19 8.17 -92.71 -0.76 9.43 16 35 H 0.07 2.38 7.84 -2.38 -0.02 2.36 16 36 H 0.04 1.71 7.59 -2.39 -0.02 1.69 16 37 H 0.38 19.07 8.07 -92.71 -0.75 18.32 16 38 H 0.25 14.49 8.31 -92.71 -0.77 13.71 16 39 H 0.10 2.97 8.03 -2.39 -0.02 2.95 16 40 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 41 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 42 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -70.58 353.82 1.88 -68.70 By element: Atomic # 1 Polarization: 34.54 SS G_CDS: -0.50 Total: 34.04 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: 5.15 Total: -0.04 kcal Atomic # 7 Polarization: -111.30 SS G_CDS: -3.88 Total: -115.19 kcal Atomic # 8 Polarization: -34.72 SS G_CDS: -0.91 Total: -35.63 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -70.58 1.88 -68.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733239708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.802 kcal (2) G-P(sol) polarization free energy of solvation -70.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds