Wall clock time and date at job start Mon Mar 30 2020 01:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.47191 * 2 1 4 4 C 1.53004 * 109.46662 * 240.00200 * 2 1 3 5 5 N 1.46506 * 109.46823 * 185.00298 * 4 2 1 6 6 C 1.36934 * 119.99821 * 179.97438 * 5 4 2 7 7 H 1.08008 * 120.00021 * 359.97438 * 6 5 4 8 8 C 1.38812 * 120.00112 * 179.97438 * 6 5 4 9 9 N 1.31622 * 119.99561 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00138 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47167 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.46836 * 120.00358 * 10 8 6 13 13 H 1.48494 * 109.47353 * 240.00220 * 10 8 6 14 14 N 1.46502 * 109.46910 * 120.00397 * 2 1 3 15 15 C 1.46492 * 120.00162 * 59.99913 * 14 2 1 16 16 C 1.34776 * 119.99470 * 239.99494 * 14 2 1 17 17 O 1.21281 * 120.00274 * 0.02562 * 16 14 2 18 18 C 1.50701 * 119.99942 * 179.97438 * 16 14 2 19 19 C 1.52995 * 109.47147 * 179.97438 * 18 16 14 20 20 H 1.09000 * 110.27855 * 304.36567 * 19 18 16 21 21 C 1.55503 * 110.28399 * 182.20347 * 19 18 16 22 22 C 1.55305 * 100.69731 * 204.65557 * 21 19 18 23 23 C 1.54382 * 102.43395 * 34.13038 * 22 21 19 24 24 O 1.43232 * 107.59109 * 338.54226 * 23 22 21 25 25 H 1.09004 * 109.46795 * 299.99763 * 1 2 3 26 26 H 1.08997 * 109.47338 * 59.99631 * 1 2 3 27 27 H 1.08999 * 109.47549 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47191 * 304.99784 * 4 2 1 29 29 H 1.08994 * 109.47650 * 65.00105 * 4 2 1 30 30 H 0.96998 * 119.99832 * 359.97438 * 5 4 2 31 31 H 0.96999 * 119.99591 * 180.02562 * 9 8 6 32 32 H 1.09001 * 109.47275 * 269.99726 * 15 14 2 33 33 H 1.08997 * 109.47219 * 29.99749 * 15 14 2 34 34 H 1.09004 * 109.47026 * 149.99818 * 15 14 2 35 35 H 1.09008 * 109.46915 * 60.00630 * 18 16 14 36 36 H 1.08996 * 109.47266 * 300.00649 * 18 16 14 37 37 H 1.09007 * 111.32681 * 86.78156 * 21 19 18 38 38 H 1.08995 * 111.14910 * 322.45919 * 21 19 18 39 39 H 1.09002 * 110.85041 * 275.83884 * 22 21 19 40 40 H 1.09001 * 110.84389 * 152.42021 * 22 21 19 41 41 H 1.09009 * 109.82643 * 98.05629 * 23 22 21 42 42 H 1.08995 * 109.83122 * 219.02553 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5000 -0.8265 -1.1907 6 6 4.1837 -1.4389 -2.2068 7 1 3.6464 -1.8448 -3.0514 8 6 5.5671 -1.5382 -2.1516 9 7 6.2217 -1.0440 -1.1221 10 14 6.4997 -2.3743 -3.5374 11 1 5.5392 -2.8415 -4.5690 12 1 7.4500 -1.4096 -4.1471 13 1 7.2514 -3.5358 -2.9981 14 7 2.0183 -0.6907 1.1962 15 6 1.6644 -2.0932 1.4279 16 6 2.7932 -0.0357 2.0833 17 8 3.0859 1.1255 1.8916 18 6 3.2951 -0.7460 3.3140 19 6 4.1457 0.2154 4.1464 20 1 4.9543 0.6252 3.5411 21 6 4.7196 -0.5144 5.3938 22 6 4.9435 0.6865 6.3528 23 6 3.7733 1.6253 5.9887 24 8 3.3305 1.2747 4.6725 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.6053 -1.7198 -1.2952 29 1 1.7516 -0.1584 -2.1370 30 1 3.9824 -0.4623 -0.4320 31 1 7.1884 -1.1130 -1.0836 32 1 0.7375 -2.1444 1.9993 33 1 1.5294 -2.5968 0.4707 34 1 2.4629 -2.5819 1.9862 35 1 3.9005 -1.6026 3.0177 36 1 2.4471 -1.0881 3.9072 37 1 5.6607 -1.0137 5.1630 38 1 3.9953 -1.2169 5.8062 39 1 5.9019 1.1668 6.1558 40 1 4.8771 0.3693 7.3936 41 1 2.9582 1.4934 6.7005 42 1 4.1125 2.6610 6.0011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753680663.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:18 Heat of formation + Delta-G solvation = -71.785254 kcal Electronic energy + Delta-G solvation = -21858.193798 eV Core-core repulsion = 18645.639887 eV Total energy + Delta-G solvation = -3212.553911 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.89217 -38.82812 -36.18049 -33.92252 -32.50090 -31.96436 -31.10223 -29.94448 -26.67080 -26.40114 -25.52576 -22.70000 -21.98792 -21.51273 -20.30765 -18.50906 -17.05044 -16.92182 -16.68110 -15.71464 -15.53202 -15.18776 -14.61823 -14.50233 -13.71791 -13.51443 -13.31199 -13.16066 -12.80307 -12.51625 -12.35030 -12.22229 -12.03186 -11.81891 -11.72856 -11.69120 -11.38549 -11.14911 -11.05851 -10.83199 -10.82580 -10.71907 -10.35749 -9.98318 -9.66475 -9.33444 -9.17760 -8.83439 -8.09878 -6.85489 -5.70406 -2.99169 3.22453 3.44513 3.46529 3.50706 3.52978 3.91403 4.46415 4.62083 4.69254 4.86329 5.00812 5.15539 5.28045 5.33935 5.44618 5.49249 5.53003 5.56034 5.60695 5.63200 5.69708 5.72144 5.76372 5.79769 5.90210 5.97178 6.02684 6.14587 6.19855 6.26676 6.27758 6.46319 6.58788 6.81330 7.12609 7.21272 7.73586 7.91464 8.47551 8.77137 9.59029 10.18841 10.54622 11.51967 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.017052 B = 0.005469 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.605534 B = 5118.735105 C = 6249.927298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.126 3.874 3 H 0.099 0.901 4 C 0.144 3.856 5 N -0.728 5.728 6 C -0.238 4.238 7 H 0.069 0.931 8 C -0.014 4.014 9 N -0.930 5.930 10 Si 0.905 3.095 11 H -0.281 1.281 12 H -0.292 1.292 13 H -0.293 1.293 14 N -0.602 5.602 15 C 0.084 3.916 16 C 0.520 3.480 17 O -0.528 6.528 18 C -0.137 4.137 19 C 0.098 3.902 20 H 0.083 0.917 21 C -0.153 4.153 22 C -0.156 4.156 23 C 0.049 3.951 24 O -0.366 6.366 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.020 0.980 29 H 0.027 0.973 30 H 0.387 0.613 31 H 0.253 0.747 32 H 0.046 0.954 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.107 0.893 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.063 0.937 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.473 -1.203 14.477 16.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.022 3.978 3 H 0.117 0.883 4 C 0.015 3.985 5 N -0.372 5.372 6 C -0.370 4.370 7 H 0.087 0.913 8 C -0.210 4.210 9 N -0.578 5.578 10 Si 0.737 3.263 11 H -0.206 1.206 12 H -0.219 1.219 13 H -0.220 1.220 14 N -0.335 5.335 15 C -0.060 4.060 16 C 0.308 3.692 17 O -0.404 6.404 18 C -0.177 4.177 19 C 0.040 3.960 20 H 0.101 0.899 21 C -0.190 4.190 22 C -0.194 4.194 23 C -0.028 4.028 24 O -0.285 6.285 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.037 0.963 29 H 0.044 0.956 30 H 0.221 0.779 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.125 0.875 36 H 0.111 0.889 37 H 0.104 0.896 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.081 0.919 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.455 -0.567 14.106 16.455 hybrid contribution 0.941 -0.635 -0.427 1.213 sum -7.514 -1.202 13.679 15.653 Atomic orbital electron populations 1.22041 0.95382 1.01872 1.01907 1.21334 0.93118 0.98557 0.84760 0.88307 1.21003 0.87061 0.96674 0.93768 1.42318 0.99748 1.70014 1.25144 1.19272 0.89458 1.29094 0.99138 0.91270 1.24738 0.96422 1.01773 0.98058 1.69704 1.06982 1.50938 1.30202 0.86142 0.79950 0.78725 0.81524 1.20628 1.21925 1.21978 1.47667 1.51226 1.12056 1.22584 1.21657 0.99581 0.82258 1.02474 1.20341 0.77936 0.86997 0.83965 1.90703 1.56682 1.16876 1.76154 1.21853 1.01331 0.99326 0.95160 1.22826 0.92757 0.86682 0.93718 0.89920 1.23421 1.02260 0.97896 0.95453 1.23101 0.99577 0.96437 1.00243 1.23076 0.95872 0.98477 0.85339 1.88548 1.56141 1.54497 1.29321 0.92716 0.91604 0.92544 0.96260 0.95558 0.77919 0.93685 0.93578 0.90554 0.91450 0.87468 0.88916 0.89571 0.90386 0.90498 0.90338 0.91867 0.91769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.19 37.16 0.34 -1.78 16 2 C 0.13 2.28 2.80 -67.93 -0.19 2.09 16 3 H 0.10 2.07 6.90 -51.93 -0.36 1.71 16 4 C 0.14 2.99 5.50 -4.04 -0.02 2.97 16 5 N -0.73 -19.19 5.43 -59.90 -0.33 -19.52 16 6 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 7 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 8 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 9 N -0.93 -28.83 13.06 55.49 0.72 -28.11 16 10 Si 0.91 22.74 29.55 -169.99 -5.02 17.72 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 13 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 14 N -0.60 -10.46 2.24 -173.94 -0.39 -10.85 16 15 C 0.08 1.15 9.30 59.84 0.56 1.71 16 16 C 0.52 9.87 7.28 -10.99 -0.08 9.79 16 17 O -0.53 -12.23 14.86 -6.35 -0.09 -12.32 16 18 C -0.14 -2.00 4.01 -27.89 -0.11 -2.11 16 19 C 0.10 1.46 2.93 -25.40 -0.07 1.38 16 20 H 0.08 1.44 8.00 -51.93 -0.42 1.03 16 21 C -0.15 -1.63 6.61 -24.18 -0.16 -1.79 16 22 C -0.16 -1.51 7.00 -24.78 -0.17 -1.69 16 23 C 0.05 0.58 7.80 37.88 0.30 0.87 16 24 O -0.37 -5.92 10.41 -47.14 -0.49 -6.41 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.06 0.70 7.67 -51.93 -0.40 0.30 16 28 H 0.02 0.39 6.88 -51.93 -0.36 0.03 16 29 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.39 11.06 7.06 -40.82 -0.29 10.77 16 31 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.08 1.11 6.53 -51.93 -0.34 0.77 16 34 H 0.07 0.85 6.44 -51.93 -0.33 0.52 16 35 H 0.11 1.46 7.40 -51.92 -0.38 1.08 16 36 H 0.09 1.12 8.11 -51.93 -0.42 0.70 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.08 0.72 8.06 -51.93 -0.42 0.30 16 39 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 337.27 15.07 5.08 5.08 Total: -1.00 -35.03 337.27 -7.45 -42.48 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -7.07 Total: 7.96 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: 0.13 Total: 3.97 kcal Atomic # 7 Polarization: -58.48 SS G_CDS: 0.01 Total: -58.47 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.59 Total: -18.73 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -35.03 -7.45 -42.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753680663.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.307 kcal (2) G-P(sol) polarization free energy of solvation -35.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds