Wall clock time and date at job start Mon Mar 30 2020 01:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.46977 * 2 1 4 4 C 1.34636 * 116.99855 * 180.02562 * 3 2 1 5 5 O 1.21509 * 120.00384 * 0.02562 * 4 3 2 6 6 N 1.34780 * 120.00274 * 180.02562 * 4 3 2 7 7 C 1.46919 * 120.63395 * 179.97438 * 6 4 3 8 8 C 1.53195 * 108.89273 * 126.29715 * 7 6 4 9 9 C 1.53346 * 109.14901 * 54.57640 * 8 7 6 10 10 N 1.46900 * 109.42051 * 178.67519 * 9 8 7 11 11 C 1.46907 * 110.99928 * 275.13331 * 10 9 8 12 12 C 1.53000 * 109.47070 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46771 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00489 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99467 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00288 * 0.02562 * 15 13 12 17 17 Si 1.86810 * 119.99923 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46514 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46620 * 119.99908 * 17 15 13 20 20 H 1.48492 * 109.47103 * 240.00296 * 17 15 13 21 21 C 1.53034 * 109.61010 * 298.71225 * 9 8 7 22 22 C 1.46933 * 120.62602 * 359.97266 * 6 4 3 23 23 H 1.08998 * 109.47174 * 299.99222 * 1 2 3 24 24 H 1.08998 * 109.47564 * 59.99961 * 1 2 3 25 25 H 1.09003 * 109.47253 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46530 * 240.00451 * 2 1 3 27 27 H 1.08996 * 109.47037 * 120.00579 * 2 1 3 28 28 H 1.09002 * 109.58751 * 246.15665 * 7 6 4 29 29 H 1.08996 * 109.58750 * 6.43850 * 7 6 4 30 30 H 1.08997 * 109.49914 * 174.65962 * 8 7 6 31 31 H 1.09002 * 109.49585 * 294.75599 * 8 7 6 32 32 H 1.09001 * 109.42242 * 58.75065 * 9 8 7 33 33 H 1.00900 * 111.00301 * 151.17769 * 10 9 8 34 34 H 1.09005 * 109.46585 * 299.99650 * 11 10 9 35 35 H 1.08994 * 109.47323 * 59.99764 * 11 10 9 36 36 H 1.09003 * 109.46848 * 299.99712 * 12 11 10 37 37 H 1.09004 * 109.47207 * 59.99877 * 12 11 10 38 38 H 0.97008 * 120.00005 * 180.02562 * 16 15 13 39 39 H 1.08994 * 109.50232 * 301.42239 * 21 9 8 40 40 H 1.09007 * 109.52628 * 181.33900 * 21 9 8 41 41 H 1.08994 * 109.58580 * 353.42544 * 22 6 4 42 42 H 1.09006 * 109.57831 * 113.70037 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3487 1.5454 -0.0005 5 8 4.0890 0.5818 -0.0015 6 7 3.8639 2.7908 0.0000 7 6 5.3183 2.9993 -0.0001 8 6 5.6874 3.9196 -1.1679 9 6 4.8644 5.2098 -1.0712 10 7 5.2367 6.1102 -2.1705 11 6 6.4190 6.9085 -1.8198 12 6 6.7758 7.8314 -2.9868 13 6 7.9883 8.6507 -2.6267 14 1 8.4572 8.5261 -1.6618 15 6 8.4989 9.5595 -3.5291 16 7 7.9276 9.7117 -4.7039 17 14 10.0014 10.5758 -3.0826 18 1 10.4512 10.2187 -1.7131 19 1 11.0929 10.2969 -4.0501 20 1 9.6548 12.0189 -3.1297 21 6 3.3739 4.8767 -1.1676 22 6 2.9817 3.9658 0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8932 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 5.6211 3.4617 0.9394 29 1 5.8248 2.0412 -0.1156 30 1 6.7501 4.1575 -1.1217 31 1 5.4671 3.4178 -2.1101 32 1 5.0664 5.6980 -0.1177 33 1 4.4632 6.7041 -2.4293 34 1 6.2033 7.5077 -0.9351 35 1 7.2578 6.2440 -1.6129 36 1 6.9916 7.2318 -3.8712 37 1 5.9371 8.4960 -3.1941 38 1 8.2872 10.3508 -5.3389 39 1 3.1753 4.3662 -2.1099 40 1 2.7912 5.7969 -1.1226 41 1 1.9466 3.6455 -0.1172 42 1 3.0926 4.5054 0.9411 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020056374.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:05 Heat of formation + Delta-G solvation = -95.341084 kcal Electronic energy + Delta-G solvation = -20752.982341 eV Core-core repulsion = 17539.406972 eV Total energy + Delta-G solvation = -3213.575369 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.78096 -38.66112 -36.69554 -35.46439 -33.23318 -32.12563 -31.33833 -31.06371 -28.51571 -25.14893 -24.10687 -23.22542 -22.96264 -21.23731 -20.49203 -19.80431 -18.20763 -17.11594 -16.84110 -16.33343 -15.36385 -15.06625 -14.89216 -14.53396 -14.39213 -14.20241 -13.71182 -13.55245 -13.21526 -13.09082 -12.71479 -12.43039 -12.18115 -12.14281 -11.88352 -11.65509 -11.34814 -11.19312 -11.00291 -10.80721 -10.75265 -10.71491 -10.48207 -10.36083 -9.95722 -9.38635 -9.15447 -8.90440 -8.36660 -7.85801 -6.00739 -4.03339 1.95357 2.67560 3.30564 3.38009 3.41854 3.64314 4.39169 4.55717 4.63665 4.64183 4.71876 4.80387 4.96664 4.98821 5.16619 5.20002 5.31463 5.35366 5.40991 5.45695 5.57959 5.61786 5.64431 5.67821 5.82089 5.90066 6.11192 6.19094 6.28229 6.34230 6.38181 6.47707 6.97399 7.17549 7.47132 7.71566 7.81300 7.94116 8.07347 8.12576 8.42478 9.04257 9.60631 11.10669 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.051425 B = 0.002818 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.347241 B = 9934.031758 C =10187.254569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.081 3.919 3 O -0.371 6.371 4 C 0.651 3.349 5 O -0.577 6.577 6 N -0.591 5.591 7 C 0.127 3.873 8 C -0.122 4.122 9 C 0.086 3.914 10 N -0.688 5.688 11 C 0.067 3.933 12 C 0.025 3.975 13 C -0.521 4.521 14 H 0.055 0.945 15 C 0.057 3.943 16 N -0.893 5.893 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.137 4.137 22 C 0.115 3.885 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.041 0.959 33 H 0.337 0.663 34 H 0.015 0.985 35 H 0.058 0.942 36 H 0.025 0.975 37 H 0.013 0.987 38 H 0.260 0.740 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.092 0.908 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.859 -15.998 10.872 24.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.007 3.993 3 O -0.285 6.285 4 C 0.405 3.595 5 O -0.466 6.466 6 N -0.331 5.331 7 C 0.005 3.995 8 C -0.161 4.161 9 C -0.024 4.024 10 N -0.319 5.319 11 C -0.061 4.061 12 C -0.013 4.013 13 C -0.560 4.560 14 H 0.073 0.927 15 C -0.144 4.144 16 N -0.532 5.532 17 Si 0.720 3.280 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.175 4.175 22 C -0.008 4.008 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.099 0.901 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.114 0.886 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.059 0.941 33 H 0.155 0.845 34 H 0.033 0.967 35 H 0.077 0.923 36 H 0.043 0.957 37 H 0.031 0.969 38 H 0.070 0.930 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.110 0.890 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.307 -16.725 10.378 24.334 hybrid contribution 0.504 1.254 0.740 1.541 sum -13.804 -15.471 11.118 23.527 Atomic orbital electron populations 1.21826 0.92587 1.03025 1.03547 1.22933 0.94760 0.78890 1.02737 1.86223 1.22229 1.32988 1.87082 1.17984 0.81083 0.84090 0.76338 1.90978 1.59802 1.39438 1.56423 1.46988 1.07704 1.02909 1.75520 1.21751 0.77097 1.01473 0.99168 1.22009 1.00933 0.95036 0.98139 1.21515 0.93161 0.93998 0.93771 1.60594 1.09078 1.24477 1.37770 1.22201 0.90688 0.94505 0.98751 1.19074 0.96123 0.93143 0.92939 1.21212 1.12583 1.21070 1.01118 0.92720 1.25012 0.97224 0.97174 0.95011 1.69983 1.40603 1.35877 1.06768 0.86535 0.82954 0.80007 0.78488 1.19772 1.20969 1.21038 1.22134 0.96526 0.99800 0.99064 1.21737 0.94236 0.85881 0.98915 0.91512 0.91408 0.90052 0.91190 0.91287 0.91087 0.88578 0.89961 0.90773 0.94068 0.84459 0.96670 0.92334 0.95664 0.96858 0.93040 0.90517 0.90501 0.89008 0.91146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 10.29 37.16 0.38 -0.48 16 2 C 0.08 0.71 6.19 37.16 0.23 0.94 16 3 O -0.37 -4.18 8.86 -40.31 -0.36 -4.54 16 4 C 0.65 8.72 8.43 54.06 0.46 9.18 16 5 O -0.58 -9.28 15.54 -19.28 -0.30 -9.58 16 6 N -0.59 -7.05 2.97 -178.53 -0.53 -7.58 16 7 C 0.13 1.49 6.42 -3.71 -0.02 1.47 16 8 C -0.12 -1.61 5.62 -26.45 -0.15 -1.76 16 9 C 0.09 1.16 2.46 -67.52 -0.17 0.99 16 10 N -0.69 -11.72 6.31 -106.51 -0.67 -12.39 16 11 C 0.07 1.36 5.42 -3.82 -0.02 1.34 16 12 C 0.02 0.64 5.23 -27.88 -0.15 0.49 16 13 C -0.52 -14.72 9.11 -34.44 -0.31 -15.04 16 14 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -26.91 13.29 55.43 0.74 -26.17 16 17 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 18 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 21 C -0.14 -1.49 5.37 -26.59 -0.14 -1.63 16 22 C 0.12 1.13 6.45 -3.69 -0.02 1.11 16 23 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.10 1.21 7.00 -51.93 -0.36 0.84 16 30 H 0.08 1.14 7.43 -51.93 -0.39 0.75 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.04 0.56 7.80 -51.93 -0.40 0.16 16 33 H 0.34 5.51 8.33 -39.29 -0.33 5.18 16 34 H 0.02 0.31 8.06 -51.93 -0.42 -0.11 16 35 H 0.06 1.20 7.42 -51.93 -0.39 0.82 16 36 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.08 0.75 8.10 -51.92 -0.42 0.33 16 41 H 0.09 0.82 6.93 -51.93 -0.36 0.46 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 340.94 15.07 5.14 5.14 Total: -1.00 -32.41 340.94 -8.28 -40.69 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -7.26 Total: -0.32 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -0.01 Total: -1.86 kcal Atomic # 7 Polarization: -45.67 SS G_CDS: -0.47 Total: -46.14 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: -0.66 Total: -14.12 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.41 -8.28 -40.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020056374.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.649 kcal (2) G-P(sol) polarization free energy of solvation -32.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds