Wall clock time and date at job start Mon Mar 30 2020 01:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.46977 * 2 1 4 4 C 1.34636 * 116.99855 * 180.02562 * 3 2 1 5 5 O 1.21509 * 120.00384 * 0.02562 * 4 3 2 6 6 N 1.34780 * 120.00274 * 180.02562 * 4 3 2 7 7 C 1.46919 * 120.63395 * 179.97438 * 6 4 3 8 8 C 1.53195 * 108.89273 * 126.29715 * 7 6 4 9 9 C 1.53346 * 109.14901 * 54.57640 * 8 7 6 10 10 N 1.46900 * 109.42051 * 178.67519 * 9 8 7 11 11 C 1.46907 * 110.99928 * 275.13331 * 10 9 8 12 12 C 1.53000 * 109.47070 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46771 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00489 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99467 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00288 * 0.02562 * 15 13 12 17 17 Si 1.86810 * 119.99923 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46514 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46620 * 119.99908 * 17 15 13 20 20 H 1.48492 * 109.47103 * 240.00296 * 17 15 13 21 21 C 1.53034 * 109.61010 * 298.71225 * 9 8 7 22 22 C 1.46933 * 120.62602 * 359.97266 * 6 4 3 23 23 H 1.08998 * 109.47174 * 299.99222 * 1 2 3 24 24 H 1.08998 * 109.47564 * 59.99961 * 1 2 3 25 25 H 1.09003 * 109.47253 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46530 * 240.00451 * 2 1 3 27 27 H 1.08996 * 109.47037 * 120.00579 * 2 1 3 28 28 H 1.09002 * 109.58751 * 246.15665 * 7 6 4 29 29 H 1.08996 * 109.58750 * 6.43850 * 7 6 4 30 30 H 1.08997 * 109.49914 * 174.65962 * 8 7 6 31 31 H 1.09002 * 109.49585 * 294.75599 * 8 7 6 32 32 H 1.09001 * 109.42242 * 58.75065 * 9 8 7 33 33 H 1.00900 * 111.00301 * 151.17769 * 10 9 8 34 34 H 1.09005 * 109.46585 * 299.99650 * 11 10 9 35 35 H 1.08994 * 109.47323 * 59.99764 * 11 10 9 36 36 H 1.09003 * 109.46848 * 299.99712 * 12 11 10 37 37 H 1.09004 * 109.47207 * 59.99877 * 12 11 10 38 38 H 0.97008 * 120.00005 * 180.02562 * 16 15 13 39 39 H 1.08994 * 109.50232 * 301.42239 * 21 9 8 40 40 H 1.09007 * 109.52628 * 181.33900 * 21 9 8 41 41 H 1.08994 * 109.58580 * 353.42544 * 22 6 4 42 42 H 1.09006 * 109.57831 * 113.70037 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3487 1.5454 -0.0005 5 8 4.0890 0.5818 -0.0015 6 7 3.8639 2.7908 0.0000 7 6 5.3183 2.9993 -0.0001 8 6 5.6874 3.9196 -1.1679 9 6 4.8644 5.2098 -1.0712 10 7 5.2367 6.1102 -2.1705 11 6 6.4190 6.9085 -1.8198 12 6 6.7758 7.8314 -2.9868 13 6 7.9883 8.6507 -2.6267 14 1 8.4572 8.5261 -1.6618 15 6 8.4989 9.5595 -3.5291 16 7 7.9276 9.7117 -4.7039 17 14 10.0014 10.5758 -3.0826 18 1 10.4512 10.2187 -1.7131 19 1 11.0929 10.2969 -4.0501 20 1 9.6548 12.0189 -3.1297 21 6 3.3739 4.8767 -1.1676 22 6 2.9817 3.9658 0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8932 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 5.6211 3.4617 0.9394 29 1 5.8248 2.0412 -0.1156 30 1 6.7501 4.1575 -1.1217 31 1 5.4671 3.4178 -2.1101 32 1 5.0664 5.6980 -0.1177 33 1 4.4632 6.7041 -2.4293 34 1 6.2033 7.5077 -0.9351 35 1 7.2578 6.2440 -1.6129 36 1 6.9916 7.2318 -3.8712 37 1 5.9371 8.4960 -3.1941 38 1 8.2872 10.3508 -5.3389 39 1 3.1753 4.3662 -2.1099 40 1 2.7912 5.7969 -1.1226 41 1 1.9466 3.6455 -0.1172 42 1 3.0926 4.5054 0.9411 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020056374.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:04 Heat of formation + Delta-G solvation = -116.971027 kcal Electronic energy + Delta-G solvation = -20753.920286 eV Core-core repulsion = 17539.406972 eV Total energy + Delta-G solvation = -3214.513314 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.74604 -39.67979 -37.73486 -36.80693 -35.11980 -33.19384 -32.48612 -31.98063 -30.18477 -26.64268 -25.29742 -24.41199 -23.78010 -22.32788 -22.18649 -20.81167 -19.16175 -18.50411 -18.05601 -17.72828 -16.79566 -16.40917 -15.94990 -15.78666 -15.65857 -15.24309 -14.91247 -14.67309 -14.34049 -14.18999 -13.93526 -13.60846 -13.32614 -13.08722 -12.98918 -12.87289 -12.81509 -12.50548 -12.43517 -12.27546 -12.17014 -11.77506 -11.65077 -11.52986 -11.44122 -11.33527 -11.11058 -10.56482 -9.88121 -9.25624 -8.19960 -6.31140 1.07404 1.40735 1.41401 1.54457 1.66126 2.40837 2.82108 3.13708 3.26670 3.74327 3.82953 4.03637 4.04517 4.11033 4.22605 4.30919 4.36002 4.44470 4.52404 4.58908 4.65166 4.68130 4.73935 4.78740 4.83646 4.94807 4.99385 5.08632 5.15008 5.16767 5.32434 5.38955 5.43381 5.47597 5.69806 5.80825 6.16647 6.22206 6.31850 6.59280 6.87061 7.14468 7.38283 8.92311 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.051425 B = 0.002818 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.347241 B = 9934.031758 C =10187.254569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.073 3.927 3 O -0.369 6.369 4 C 0.646 3.354 5 O -0.611 6.611 6 N -0.591 5.591 7 C 0.133 3.867 8 C -0.117 4.117 9 C 0.086 3.914 10 N -0.696 5.696 11 C 0.087 3.913 12 C 0.031 3.969 13 C -0.542 4.542 14 H 0.061 0.939 15 C -0.001 4.001 16 N -0.932 5.932 17 Si 0.966 3.034 18 H -0.261 1.261 19 H -0.279 1.279 20 H -0.277 1.277 21 C -0.128 4.128 22 C 0.118 3.882 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.102 0.898 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.342 0.658 34 H 0.022 0.978 35 H 0.057 0.943 36 H -0.009 1.009 37 H -0.008 1.008 38 H 0.263 0.737 39 H 0.064 0.936 40 H 0.095 0.905 41 H 0.105 0.895 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.510 -15.824 12.590 25.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.001 4.001 3 O -0.283 6.283 4 C 0.401 3.599 5 O -0.503 6.503 6 N -0.331 5.331 7 C 0.011 3.989 8 C -0.156 4.156 9 C -0.024 4.024 10 N -0.328 5.328 11 C -0.042 4.042 12 C -0.007 4.007 13 C -0.581 4.581 14 H 0.079 0.921 15 C -0.199 4.199 16 N -0.572 5.572 17 Si 0.791 3.209 18 H -0.185 1.185 19 H -0.205 1.205 20 H -0.203 1.203 21 C -0.167 4.167 22 C -0.004 4.004 23 H 0.090 0.910 24 H 0.086 0.914 25 H 0.121 0.879 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.109 0.891 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.160 0.840 34 H 0.040 0.960 35 H 0.075 0.925 36 H 0.010 0.990 37 H 0.010 0.990 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.113 0.887 41 H 0.123 0.877 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.991 -16.551 12.109 25.403 hybrid contribution 0.646 1.153 0.167 1.332 sum -14.345 -15.399 12.276 24.364 Atomic orbital electron populations 1.21835 0.90005 1.04520 1.03771 1.23230 0.96689 0.77761 1.02467 1.86240 1.20850 1.34501 1.86687 1.18182 0.81576 0.84098 0.76014 1.90951 1.60707 1.40625 1.58022 1.47110 1.07965 1.03178 1.74827 1.21670 0.77286 1.00659 0.99287 1.21926 1.00481 0.95159 0.98024 1.21606 0.94994 0.93012 0.92753 1.60479 1.08389 1.24262 1.39663 1.21789 0.92196 0.93837 0.96393 1.18932 0.94877 0.93119 0.93763 1.21655 1.13429 1.21499 1.01473 0.92083 1.25985 1.00578 0.98505 0.94826 1.70115 1.42415 1.36764 1.07953 0.85379 0.78684 0.78175 0.78675 1.18490 1.20524 1.20309 1.22064 0.94674 1.00783 0.99147 1.21873 0.94424 0.84869 0.99207 0.91015 0.91368 0.87918 0.91815 0.91337 0.89066 0.89633 0.90795 0.92543 0.93143 0.83985 0.96022 0.92489 0.99024 0.98971 0.92787 0.91671 0.88685 0.87723 0.89087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 10.29 71.98 0.74 -0.61 16 2 C 0.07 1.19 6.19 71.98 0.45 1.63 16 3 O -0.37 -7.85 8.86 -55.46 -0.49 -8.34 16 4 C 0.65 16.79 8.43 129.79 1.09 17.88 16 5 O -0.61 -19.66 15.54 19.81 0.31 -19.35 16 6 N -0.59 -13.20 2.97 -949.17 -2.82 -16.03 16 7 C 0.13 2.98 6.42 86.36 0.55 3.53 16 8 C -0.12 -3.02 5.62 30.78 0.17 -2.85 16 9 C 0.09 2.19 2.46 45.04 0.11 2.30 16 10 N -0.70 -23.39 6.31 -490.89 -3.10 -26.49 16 11 C 0.09 3.53 5.42 86.30 0.47 4.00 16 12 C 0.03 1.62 5.23 29.85 0.16 1.77 16 13 C -0.54 -30.81 9.11 25.60 0.23 -30.58 16 14 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 15 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 16 N -0.93 -57.03 13.29 21.45 0.28 -56.75 16 17 Si 0.97 44.21 29.54 68.60 2.03 46.23 16 18 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 21 C -0.13 -2.53 5.37 30.68 0.16 -2.36 16 22 C 0.12 2.00 6.45 86.37 0.56 2.56 16 23 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 24 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.09 2.13 7.00 -2.39 -0.02 2.12 16 30 H 0.07 2.02 7.43 -2.39 -0.02 2.01 16 31 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.05 1.24 7.80 -2.39 -0.02 1.22 16 33 H 0.34 10.97 8.33 -89.69 -0.75 10.22 16 34 H 0.02 0.85 8.06 -2.38 -0.02 0.83 16 35 H 0.06 2.33 7.42 -2.39 -0.02 2.31 16 36 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 37 H -0.01 -0.46 8.14 -2.39 -0.02 -0.47 16 38 H 0.26 15.07 8.31 -92.70 -0.77 14.30 16 39 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.09 1.57 8.10 -2.38 -0.02 1.55 16 41 H 0.10 1.56 6.93 -2.39 -0.02 1.54 16 42 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 Total: -1.00 -70.41 340.94 1.61 -68.80 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 0.24 Total: 14.25 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: 5.16 Total: -2.32 kcal Atomic # 7 Polarization: -93.63 SS G_CDS: -5.63 Total: -99.26 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -0.18 Total: -27.69 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Total: -70.41 1.61 -68.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020056374.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.175 kcal (2) G-P(sol) polarization free energy of solvation -70.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds