Wall clock time and date at job start Mon Mar 30 2020 01:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46504 * 120.00463 * 2 1 4 4 C 1.50697 * 109.47527 * 270.00600 * 3 2 1 5 5 H 1.08009 * 119.99486 * 359.97438 * 4 3 2 6 6 C 1.37868 * 120.00223 * 179.97438 * 4 3 2 7 7 N 1.31519 * 120.00106 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 120.00029 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47346 * 59.99815 * 8 6 4 10 10 H 1.48503 * 109.47098 * 179.97438 * 8 6 4 11 11 H 1.48507 * 109.46814 * 299.99771 * 8 6 4 12 12 C 1.34776 * 119.99801 * 180.02562 * 2 1 3 13 13 O 1.21282 * 119.99940 * 180.02562 * 12 2 1 14 14 C 1.50698 * 120.00035 * 359.97438 * 12 2 1 15 15 C 1.53006 * 109.47184 * 180.02562 * 14 12 2 16 16 N 1.46898 * 109.47006 * 180.02562 * 15 14 12 17 17 C 1.46846 * 111.00018 * 294.20961 * 16 15 14 18 18 C 1.53033 * 109.52460 * 174.16134 * 17 16 15 19 19 C 1.53124 * 109.27811 * 59.18358 * 18 17 16 20 20 O 1.42899 * 109.52483 * 182.44119 * 19 18 17 21 21 C 1.53125 * 109.15751 * 302.34732 * 19 18 17 22 22 C 1.46851 * 110.99682 * 170.00115 * 16 15 14 23 23 H 1.08999 * 109.46908 * 269.99915 * 1 2 3 24 24 H 1.09000 * 109.47065 * 29.99364 * 1 2 3 25 25 H 1.08990 * 109.47304 * 149.99656 * 1 2 3 26 26 H 1.09004 * 109.46561 * 30.00494 * 3 2 1 27 27 H 1.08998 * 109.47073 * 150.00154 * 3 2 1 28 28 H 0.97000 * 119.99819 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.46665 * 60.00498 * 14 12 2 30 30 H 1.08993 * 109.47304 * 300.00054 * 14 12 2 31 31 H 1.09001 * 109.46801 * 300.00442 * 15 14 12 32 32 H 1.09001 * 109.46998 * 60.00038 * 15 14 12 33 33 H 1.09002 * 109.46555 * 294.18280 * 17 16 15 34 34 H 1.09001 * 109.46296 * 54.14881 * 17 16 15 35 35 H 1.08997 * 109.50475 * 299.23909 * 18 17 16 36 36 H 1.09002 * 109.50799 * 179.12007 * 18 17 16 37 37 H 1.08998 * 109.57589 * 62.27874 * 19 18 17 38 38 H 0.96693 * 113.99955 * 299.68250 * 20 19 18 39 39 H 1.09005 * 109.50073 * 297.71107 * 21 19 18 40 40 H 1.08991 * 109.50379 * 177.59621 * 21 19 18 41 41 H 1.08989 * 109.46428 * 305.85572 * 22 16 15 42 42 H 1.09002 * 109.45912 * 65.83533 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7039 -1.4208 5 1 2.0980 1.0959 -2.2417 6 6 3.1261 2.8780 -1.6726 7 7 3.5526 3.6185 -0.6730 8 14 3.4379 3.4170 -3.4338 9 1 2.1407 3.5938 -4.1345 10 1 4.1794 4.7037 -3.4338 11 1 4.2413 2.3822 -4.1332 12 6 2.1388 -1.1672 -0.0005 13 8 3.3516 -1.1672 -0.0001 14 6 1.3853 -2.4723 -0.0005 15 6 2.3795 -3.6353 -0.0005 16 7 1.6449 -4.9074 -0.0011 17 6 0.8945 -5.0824 1.2489 18 6 0.0302 -6.3417 1.1546 19 6 0.9302 -7.5549 0.9037 20 8 0.1239 -8.7257 0.7581 21 6 1.7364 -7.3261 -0.3779 22 6 2.5512 -6.0382 -0.2392 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8900 -0.5137 25 1 -0.3633 -0.8899 -0.5138 26 1 1.6085 2.0283 0.5139 27 1 3.1500 1.1383 0.5138 28 1 4.0289 4.4448 -0.8502 29 1 0.7584 -2.5298 -0.8904 30 1 0.7590 -2.5302 0.8896 31 1 3.0062 -3.5775 -0.8905 32 1 3.0062 -3.5776 0.8895 33 1 1.5922 -5.1821 2.0805 34 1 0.2554 -4.2148 1.4133 35 1 -0.6771 -6.2369 0.3319 36 1 -0.5148 -6.4800 2.0884 37 1 1.6117 -7.6842 1.7445 38 1 -0.4147 -8.9314 1.5344 39 1 1.0559 -7.2368 -1.2248 40 1 2.4102 -8.1675 -0.5390 41 1 3.1153 -5.8648 -1.1555 42 1 3.2409 -6.1336 0.5994 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034674190.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:42 Heat of formation + Delta-G solvation = -90.104414 kcal Electronic energy + Delta-G solvation = -21031.567208 eV Core-core repulsion = 17818.218918 eV Total energy + Delta-G solvation = -3213.348290 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.68203 -38.79951 -36.72101 -34.80702 -33.10589 -32.52612 -31.16711 -29.83125 -27.64493 -25.80192 -24.56319 -23.48273 -22.86045 -21.30081 -20.05538 -18.30738 -17.60705 -16.74283 -16.52461 -15.62929 -15.47819 -15.32547 -14.85223 -14.63492 -14.45821 -14.11809 -13.79869 -13.41495 -13.05399 -12.56518 -12.33474 -12.22290 -12.16443 -11.90150 -11.76063 -11.53040 -11.43412 -11.27306 -11.10841 -10.92405 -10.80257 -10.57451 -10.52217 -10.15108 -10.05664 -9.63192 -8.88164 -8.43579 -8.42340 -7.62756 -6.03360 -4.08225 3.32805 3.36939 3.38678 3.47012 3.60370 3.89124 4.14488 4.45966 4.50616 4.53328 4.83895 4.91244 5.07887 5.17254 5.21788 5.26473 5.28409 5.33709 5.41019 5.50500 5.57752 5.61083 5.71753 5.77066 5.83550 5.89323 5.93954 6.02324 6.12032 6.15759 6.24376 6.96236 6.96678 7.07507 7.33165 7.45048 7.55576 7.93072 8.24646 8.43807 8.91150 9.11330 9.56935 11.04723 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.038202 B = 0.003309 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.761975 B = 8460.096244 C = 8736.503264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.603 5.603 3 C 0.245 3.755 4 C -0.526 4.526 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.504 3.496 13 O -0.546 6.546 14 C -0.135 4.135 15 C 0.073 3.927 16 N -0.541 5.541 17 C 0.052 3.948 18 C -0.148 4.148 19 C 0.102 3.898 20 O -0.568 6.568 21 C -0.109 4.109 22 C 0.059 3.941 23 H 0.043 0.957 24 H 0.073 0.927 25 H 0.058 0.942 26 H 0.031 0.969 27 H 0.043 0.957 28 H 0.264 0.736 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.043 0.957 33 H 0.034 0.966 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.051 0.949 38 H 0.376 0.624 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.776 -19.909 5.030 22.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.335 5.335 3 C 0.126 3.874 4 C -0.565 4.565 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.201 1.201 12 C 0.290 3.710 13 O -0.424 6.424 14 C -0.175 4.175 15 C -0.055 4.055 16 N -0.266 5.266 17 C -0.076 4.076 18 C -0.186 4.186 19 C 0.044 3.956 20 O -0.374 6.374 21 C -0.147 4.147 22 C -0.069 4.069 23 H 0.061 0.939 24 H 0.092 0.908 25 H 0.077 0.923 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.113 0.887 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.223 0.777 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.102 0.898 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -8.081 -19.692 4.104 21.678 hybrid contribution 0.350 0.522 0.294 0.694 sum -7.730 -19.170 4.398 21.133 Atomic orbital electron populations 1.21634 0.81447 1.02662 1.00308 1.48163 1.06189 1.07886 1.71311 1.19275 0.92528 0.78165 0.97467 1.21408 1.36552 1.06253 0.92318 0.92505 1.24941 0.95352 0.96384 0.97464 1.69927 1.38434 1.14343 1.30804 0.86551 0.78375 0.77807 0.84646 1.20235 1.21178 1.20148 1.20307 0.88071 0.85181 0.77428 1.90664 1.14006 1.87379 1.50363 1.21654 0.99268 0.92687 1.03936 1.21799 0.94558 0.86574 1.02556 1.61928 1.27790 1.02262 1.34622 1.22093 0.96823 0.98166 0.90496 1.22315 0.98966 0.94756 1.02534 1.21891 0.91625 0.84169 0.97956 1.86520 1.61192 1.45614 1.44059 1.21540 0.98863 0.96764 0.97504 1.22028 0.93727 0.89724 1.01459 0.93878 0.90832 0.92290 0.95073 0.93905 0.92672 0.88651 0.89877 0.89687 0.93912 0.94793 0.89953 0.90088 0.91457 0.93138 0.77718 0.90202 0.90944 0.89770 0.94682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.32 10.24 59.85 0.61 1.94 16 2 N -0.60 -12.89 2.86 -182.96 -0.52 -13.42 16 3 C 0.24 6.49 5.16 -5.19 -0.03 6.47 16 4 C -0.53 -15.12 9.38 -34.44 -0.32 -15.45 16 5 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 8 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 C 0.50 10.45 7.67 -10.99 -0.08 10.36 16 13 O -0.55 -13.73 15.56 5.56 0.09 -13.65 16 14 C -0.13 -1.98 4.18 -27.88 -0.12 -2.10 16 15 C 0.07 1.03 4.25 -3.82 -0.02 1.01 16 16 N -0.54 -6.29 4.66 -234.67 -1.09 -7.38 16 17 C 0.05 0.52 5.29 -3.84 -0.02 0.50 16 18 C -0.15 -1.23 5.72 -26.65 -0.15 -1.38 16 19 C 0.10 0.89 3.54 -26.60 -0.09 0.80 16 20 O -0.57 -5.01 13.32 -35.23 -0.47 -5.48 16 21 C -0.11 -1.03 5.75 -26.65 -0.15 -1.19 16 22 C 0.06 0.61 5.46 -3.83 -0.02 0.59 16 23 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 25 H 0.06 0.76 6.44 -51.93 -0.33 0.43 16 26 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 27 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 28 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.10 1.32 7.40 -51.93 -0.38 0.93 16 30 H 0.08 1.04 6.39 -51.93 -0.33 0.70 16 31 H 0.08 1.32 7.94 -51.93 -0.41 0.90 16 32 H 0.04 0.65 8.08 -51.93 -0.42 0.23 16 33 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.79 6.21 -51.93 -0.32 0.47 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.38 1.71 9.09 45.56 0.41 2.12 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.86 8.01 -51.94 -0.42 0.44 16 42 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 337.05 15.07 5.08 5.08 Total: -1.00 -34.14 337.05 -8.05 -42.19 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -6.36 Total: -1.41 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -0.49 Total: 3.19 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: -0.88 Total: -46.94 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.38 Total: -19.13 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.14 -8.05 -42.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034674190.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.910 kcal (2) G-P(sol) polarization free energy of solvation -34.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds