Wall clock time and date at job start Mon Mar 30 2020 01:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46504 * 120.00463 * 2 1 4 4 C 1.50697 * 109.47527 * 270.00600 * 3 2 1 5 5 H 1.08009 * 119.99486 * 359.97438 * 4 3 2 6 6 C 1.37868 * 120.00223 * 179.97438 * 4 3 2 7 7 N 1.31519 * 120.00106 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 120.00029 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47346 * 59.99815 * 8 6 4 10 10 H 1.48503 * 109.47098 * 179.97438 * 8 6 4 11 11 H 1.48507 * 109.46814 * 299.99771 * 8 6 4 12 12 C 1.34776 * 119.99801 * 180.02562 * 2 1 3 13 13 O 1.21282 * 119.99940 * 180.02562 * 12 2 1 14 14 C 1.50698 * 120.00035 * 359.97438 * 12 2 1 15 15 C 1.53006 * 109.47184 * 180.02562 * 14 12 2 16 16 N 1.46898 * 109.47006 * 180.02562 * 15 14 12 17 17 C 1.46846 * 111.00018 * 294.20961 * 16 15 14 18 18 C 1.53033 * 109.52460 * 174.16134 * 17 16 15 19 19 C 1.53124 * 109.27811 * 59.18358 * 18 17 16 20 20 O 1.42899 * 109.52483 * 182.44119 * 19 18 17 21 21 C 1.53125 * 109.15751 * 302.34732 * 19 18 17 22 22 C 1.46851 * 110.99682 * 170.00115 * 16 15 14 23 23 H 1.08999 * 109.46908 * 269.99915 * 1 2 3 24 24 H 1.09000 * 109.47065 * 29.99364 * 1 2 3 25 25 H 1.08990 * 109.47304 * 149.99656 * 1 2 3 26 26 H 1.09004 * 109.46561 * 30.00494 * 3 2 1 27 27 H 1.08998 * 109.47073 * 150.00154 * 3 2 1 28 28 H 0.97000 * 119.99819 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.46665 * 60.00498 * 14 12 2 30 30 H 1.08993 * 109.47304 * 300.00054 * 14 12 2 31 31 H 1.09001 * 109.46801 * 300.00442 * 15 14 12 32 32 H 1.09001 * 109.46998 * 60.00038 * 15 14 12 33 33 H 1.09002 * 109.46555 * 294.18280 * 17 16 15 34 34 H 1.09001 * 109.46296 * 54.14881 * 17 16 15 35 35 H 1.08997 * 109.50475 * 299.23909 * 18 17 16 36 36 H 1.09002 * 109.50799 * 179.12007 * 18 17 16 37 37 H 1.08998 * 109.57589 * 62.27874 * 19 18 17 38 38 H 0.96693 * 113.99955 * 299.68250 * 20 19 18 39 39 H 1.09005 * 109.50073 * 297.71107 * 21 19 18 40 40 H 1.08991 * 109.50379 * 177.59621 * 21 19 18 41 41 H 1.08989 * 109.46428 * 305.85572 * 22 16 15 42 42 H 1.09002 * 109.45912 * 65.83533 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7039 -1.4208 5 1 2.0980 1.0959 -2.2417 6 6 3.1261 2.8780 -1.6726 7 7 3.5526 3.6185 -0.6730 8 14 3.4379 3.4170 -3.4338 9 1 2.1407 3.5938 -4.1345 10 1 4.1794 4.7037 -3.4338 11 1 4.2413 2.3822 -4.1332 12 6 2.1388 -1.1672 -0.0005 13 8 3.3516 -1.1672 -0.0001 14 6 1.3853 -2.4723 -0.0005 15 6 2.3795 -3.6353 -0.0005 16 7 1.6449 -4.9074 -0.0011 17 6 0.8945 -5.0824 1.2489 18 6 0.0302 -6.3417 1.1546 19 6 0.9302 -7.5549 0.9037 20 8 0.1239 -8.7257 0.7581 21 6 1.7364 -7.3261 -0.3779 22 6 2.5512 -6.0382 -0.2392 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8900 -0.5137 25 1 -0.3633 -0.8899 -0.5138 26 1 1.6085 2.0283 0.5139 27 1 3.1500 1.1383 0.5138 28 1 4.0289 4.4448 -0.8502 29 1 0.7584 -2.5298 -0.8904 30 1 0.7590 -2.5302 0.8896 31 1 3.0062 -3.5775 -0.8905 32 1 3.0062 -3.5776 0.8895 33 1 1.5922 -5.1821 2.0805 34 1 0.2554 -4.2148 1.4133 35 1 -0.6771 -6.2369 0.3319 36 1 -0.5148 -6.4800 2.0884 37 1 1.6117 -7.6842 1.7445 38 1 -0.4147 -8.9314 1.5344 39 1 1.0559 -7.2368 -1.2248 40 1 2.4102 -8.1675 -0.5390 41 1 3.1153 -5.8648 -1.1555 42 1 3.2409 -6.1336 0.5994 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034674190.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:42 Heat of formation + Delta-G solvation = -116.759782 kcal Electronic energy + Delta-G solvation = -21032.723071 eV Core-core repulsion = 17818.218918 eV Total energy + Delta-G solvation = -3214.504153 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.86429 -40.05195 -37.52221 -36.58017 -34.77530 -33.96573 -31.90883 -31.08108 -29.42310 -27.30198 -25.88818 -24.50786 -24.15466 -22.51982 -20.80745 -19.88292 -18.70386 -18.27908 -18.02465 -17.12442 -16.82615 -16.55276 -16.24380 -15.75810 -15.50677 -15.29157 -14.83894 -14.59810 -14.20678 -13.94620 -13.78549 -13.58813 -13.44359 -13.24538 -13.13432 -12.82180 -12.69933 -12.63995 -12.39315 -12.19724 -12.18130 -12.01404 -11.91328 -11.71751 -11.27338 -10.72781 -10.64877 -10.59804 -9.41706 -9.36020 -8.23049 -6.38297 1.36368 1.40737 1.48101 1.84315 2.28000 2.41717 2.92268 3.06351 3.30115 3.75581 3.77672 3.89132 4.00544 4.12794 4.19867 4.26491 4.38522 4.41761 4.52091 4.59711 4.64085 4.72863 4.78453 4.87531 4.92417 4.95533 4.98246 5.00875 5.04327 5.09635 5.18107 5.22649 5.36657 5.55730 5.84092 5.99633 6.05688 6.11274 6.69022 6.79709 6.91065 7.27662 7.48793 8.83844 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.038202 B = 0.003309 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.761975 B = 8460.096244 C = 8736.503264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.611 5.611 3 C 0.258 3.742 4 C -0.545 4.545 5 H 0.053 0.947 6 C 0.007 3.993 7 N -0.930 5.930 8 Si 0.968 3.032 9 H -0.259 1.259 10 H -0.278 1.278 11 H -0.278 1.278 12 C 0.494 3.506 13 O -0.602 6.602 14 C -0.115 4.115 15 C 0.081 3.919 16 N -0.541 5.541 17 C 0.047 3.953 18 C -0.139 4.139 19 C 0.103 3.897 20 O -0.584 6.584 21 C -0.106 4.106 22 C 0.057 3.943 23 H 0.071 0.929 24 H 0.064 0.936 25 H 0.095 0.905 26 H 0.023 0.977 27 H -0.004 1.004 28 H 0.268 0.732 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.064 0.936 32 H 0.027 0.973 33 H 0.034 0.966 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.058 0.942 38 H 0.394 0.606 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.821 -21.234 4.658 24.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.343 5.343 3 C 0.137 3.863 4 C -0.583 4.583 5 H 0.072 0.928 6 C -0.192 4.192 7 N -0.569 5.569 8 Si 0.792 3.208 9 H -0.184 1.184 10 H -0.203 1.203 11 H -0.203 1.203 12 C 0.283 3.717 13 O -0.484 6.484 14 C -0.155 4.155 15 C -0.048 4.048 16 N -0.266 5.266 17 C -0.080 4.080 18 C -0.177 4.177 19 C 0.044 3.956 20 O -0.392 6.392 21 C -0.144 4.144 22 C -0.070 4.070 23 H 0.090 0.910 24 H 0.083 0.917 25 H 0.113 0.887 26 H 0.041 0.959 27 H 0.014 0.986 28 H 0.076 0.924 29 H 0.133 0.867 30 H 0.134 0.866 31 H 0.082 0.918 32 H 0.045 0.955 33 H 0.053 0.947 34 H 0.108 0.892 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.076 0.924 38 H 0.244 0.756 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -10.195 -21.046 3.750 23.684 hybrid contribution 0.973 0.886 0.475 1.400 sum -9.222 -20.159 4.225 22.568 Atomic orbital electron populations 1.21942 0.77751 1.04051 1.02635 1.48207 1.08503 1.06387 1.71162 1.18744 0.91072 0.80537 0.95980 1.21696 1.36953 1.06582 0.93095 0.92844 1.25882 0.94862 0.96405 1.02088 1.70048 1.38940 1.14790 1.33147 0.85459 0.78895 0.77350 0.79060 1.18373 1.20287 1.20314 1.21391 0.87793 0.86748 0.75798 1.90632 1.16778 1.88289 1.52697 1.21562 0.98851 0.88792 1.06251 1.21596 0.94302 0.87953 1.00919 1.61941 1.27499 1.01318 1.35863 1.22225 0.96883 0.99407 0.89519 1.22255 0.98422 0.93572 1.03452 1.21851 0.91813 0.84474 0.97448 1.86478 1.61599 1.45500 1.45623 1.21493 0.98803 0.96268 0.97840 1.22055 0.93839 0.89800 1.01344 0.91006 0.91713 0.88652 0.95860 0.98554 0.92367 0.86733 0.86609 0.91772 0.95451 0.94737 0.89164 0.90907 0.89065 0.92441 0.75581 0.91259 0.90396 0.90230 0.94528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.29 10.24 127.77 1.31 3.60 16 2 N -0.61 -26.07 2.86 -851.15 -2.43 -28.51 16 3 C 0.26 14.17 5.16 85.63 0.44 14.61 16 4 C -0.54 -31.91 9.38 25.60 0.24 -31.67 16 5 H 0.05 3.09 7.81 -2.91 -0.02 3.06 16 6 C 0.01 0.38 5.46 84.65 0.46 0.84 16 7 N -0.93 -56.94 13.29 21.44 0.28 -56.65 16 8 Si 0.97 45.34 29.54 68.60 2.03 47.37 16 9 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 12 C 0.49 20.52 7.67 87.66 0.67 21.19 16 13 O -0.60 -31.53 15.56 -3.04 -0.05 -31.58 16 14 C -0.11 -3.14 4.18 29.85 0.12 -3.02 16 15 C 0.08 2.23 4.25 86.31 0.37 2.60 16 16 N -0.54 -11.70 4.66 -896.37 -4.17 -15.88 16 17 C 0.05 0.81 5.29 86.32 0.46 1.26 16 18 C -0.14 -1.90 5.72 30.65 0.18 -1.72 16 19 C 0.10 1.55 3.54 30.68 0.11 1.66 16 20 O -0.58 -8.86 13.32 -148.98 -1.99 -10.85 16 21 C -0.11 -1.86 5.75 30.65 0.18 -1.69 16 22 C 0.06 1.14 5.46 86.32 0.47 1.61 16 23 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.06 2.02 8.07 -2.39 -0.02 2.00 16 25 H 0.10 2.10 6.44 -2.39 -0.02 2.08 16 26 H 0.02 1.29 8.07 -2.39 -0.02 1.27 16 27 H 0.00 -0.23 7.42 -2.39 -0.02 -0.25 16 28 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 29 H 0.11 2.78 7.40 -2.39 -0.02 2.76 16 30 H 0.12 2.46 6.39 -2.39 -0.02 2.44 16 31 H 0.06 2.03 7.94 -2.39 -0.02 2.01 16 32 H 0.03 0.83 8.08 -2.39 -0.02 0.81 16 33 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.09 1.39 6.21 -2.39 -0.01 1.38 16 35 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.39 2.48 9.09 -74.06 -0.67 1.80 16 39 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 40 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.08 1.62 8.01 -2.39 -0.02 1.60 16 42 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -76.74 337.05 -1.00 -77.74 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: 0.32 Total: 9.07 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: 5.01 Total: 9.28 kcal Atomic # 7 Polarization: -94.71 SS G_CDS: -6.32 Total: -101.04 kcal Atomic # 8 Polarization: -40.39 SS G_CDS: -2.03 Total: -42.42 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -76.74 -1.00 -77.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034674190.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.020 kcal (2) G-P(sol) polarization free energy of solvation -76.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds