Wall clock time and date at job start Mon Mar 30 2020 01:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46501 * 120.00030 * 2 1 4 4 C 1.50695 * 109.47668 * 270.00368 * 3 2 1 5 5 H 1.08008 * 119.99316 * 359.97438 * 4 3 2 6 6 C 1.37869 * 120.00207 * 180.02562 * 4 3 2 7 7 N 1.31522 * 119.99857 * 179.97438 * 6 4 3 8 8 Si 1.86797 * 120.00229 * 359.97438 * 6 4 3 9 9 H 1.48500 * 109.47065 * 90.00212 * 8 6 4 10 10 H 1.48498 * 109.47477 * 210.00299 * 8 6 4 11 11 H 1.48499 * 109.47150 * 330.00614 * 8 6 4 12 12 C 1.34773 * 120.00374 * 180.02562 * 2 1 3 13 13 O 1.21276 * 120.00550 * 180.02562 * 12 2 1 14 14 C 1.50706 * 119.99618 * 359.97438 * 12 2 1 15 15 C 1.52999 * 109.46778 * 179.97438 * 14 12 2 16 16 N 1.46909 * 109.47025 * 180.02562 * 15 14 12 17 17 C 1.46846 * 111.00162 * 45.78723 * 16 15 14 18 18 C 1.53030 * 109.52377 * 185.84294 * 17 16 15 19 19 C 1.53123 * 109.28009 * 300.82027 * 18 17 16 20 20 C 1.53118 * 109.15585 * 57.65675 * 19 18 17 21 21 H 1.09000 * 109.50693 * 62.28496 * 20 19 18 22 22 O 1.42899 * 109.50426 * 182.40667 * 20 19 18 23 23 C 1.46846 * 111.00243 * 170.00251 * 16 15 14 24 24 H 1.09000 * 109.47127 * 269.99730 * 1 2 3 25 25 H 1.08998 * 109.46875 * 29.99495 * 1 2 3 26 26 H 1.08994 * 109.46872 * 149.99964 * 1 2 3 27 27 H 1.09009 * 109.46576 * 30.00239 * 3 2 1 28 28 H 1.09004 * 109.47169 * 149.99537 * 3 2 1 29 29 H 0.96998 * 119.99734 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.47007 * 60.00136 * 14 12 2 31 31 H 1.08999 * 109.47519 * 300.00315 * 14 12 2 32 32 H 1.09000 * 109.47102 * 60.00364 * 15 14 12 33 33 H 1.09003 * 109.47357 * 299.99992 * 15 14 12 34 34 H 1.08999 * 109.46373 * 305.86398 * 17 16 15 35 35 H 1.08998 * 109.45881 * 65.82485 * 17 16 15 36 36 H 1.09003 * 109.50272 * 180.88314 * 18 17 16 37 37 H 1.08997 * 109.53617 * 60.78297 * 18 17 16 38 38 H 1.08993 * 109.52379 * 297.75279 * 19 18 17 39 39 H 1.08996 * 109.52598 * 177.55713 * 19 18 17 40 40 H 0.96707 * 113.99577 * 299.80330 * 22 20 19 41 41 H 1.08998 * 109.45759 * 294.17597 * 23 16 15 42 42 H 1.09003 * 109.46299 * 54.15067 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7039 -1.4207 5 1 2.0981 1.0959 -2.2416 6 6 3.1269 2.8775 -1.6726 7 7 3.3465 3.2570 -2.9126 8 14 3.7339 3.9287 -0.2527 9 1 5.1070 3.5068 0.1238 10 1 3.7498 5.3554 -0.6644 11 1 2.8275 3.7595 0.9113 12 6 2.1390 -1.1671 -0.0005 13 8 3.3517 -1.1672 -0.0001 14 6 1.3855 -2.4723 -0.0005 15 6 2.3798 -3.6351 -0.0018 16 7 1.6453 -4.9074 -0.0024 17 6 0.5538 -4.8846 -0.9846 18 6 -0.2764 -6.1637 -0.8564 19 6 0.6253 -7.3778 -1.0959 20 6 1.7806 -7.3516 -0.0913 21 1 1.3842 -7.4271 0.9213 22 8 2.6578 -8.4509 -0.3443 23 6 2.5513 -6.0381 -0.2417 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3633 -0.8899 -0.5138 27 1 1.6084 2.0284 0.5139 28 1 3.1500 1.1384 0.5139 29 1 3.8233 4.0829 -3.0897 30 1 0.7585 -2.5298 -0.8903 31 1 0.7591 -2.5303 0.8896 32 1 3.0071 -3.5778 0.8877 33 1 3.0058 -3.5770 -0.8923 34 1 -0.0823 -4.0187 -0.8006 35 1 0.9709 -4.8214 -1.9896 36 1 -1.0770 -6.1535 -1.5960 37 1 -0.7057 -6.2209 0.1439 38 1 1.0234 -7.3415 -2.1099 39 1 0.0477 -8.2925 -0.9629 40 1 2.2352 -9.3173 -0.2664 41 1 2.9590 -5.9695 -1.2502 42 1 3.3659 -6.0102 0.4821 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042468195.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:49 Heat of formation + Delta-G solvation = -110.879750 kcal Electronic energy + Delta-G solvation = -21168.447670 eV Core-core repulsion = 17954.198494 eV Total energy + Delta-G solvation = -3214.249176 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.98271 -40.10259 -37.49732 -36.64305 -34.77532 -34.38252 -32.09633 -30.70004 -29.76635 -27.37710 -26.29489 -24.39981 -23.90193 -22.44130 -20.80474 -19.87777 -19.16562 -18.44741 -17.95585 -17.14285 -16.87570 -16.66709 -16.18652 -15.77256 -15.42812 -15.35054 -14.89512 -14.55640 -14.44897 -14.17477 -13.85556 -13.67317 -13.65441 -13.40325 -13.26914 -12.93563 -12.81153 -12.51368 -12.34821 -12.28922 -12.03353 -11.91396 -11.76527 -11.57129 -11.34907 -10.84953 -10.77021 -10.66181 -9.45692 -9.39103 -8.35932 -6.41309 1.31819 1.36258 1.44715 1.78294 2.21089 2.29930 2.70585 2.98675 3.49610 3.71849 3.81335 3.84216 3.95808 3.99556 4.12331 4.23211 4.36623 4.41360 4.51465 4.60597 4.65139 4.68242 4.71432 4.82018 4.86590 4.87891 4.95467 4.97243 5.00017 5.01971 5.08820 5.14805 5.40485 5.44514 5.60940 5.90696 6.02285 6.21858 6.59926 6.69032 6.89518 7.19623 7.40697 8.81132 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.036285 B = 0.003498 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.486920 B = 8002.106570 C = 8209.919147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.608 5.608 3 C 0.222 3.778 4 C -0.538 4.538 5 H 0.027 0.973 6 C 0.009 3.991 7 N -0.946 5.946 8 Si 0.950 3.050 9 H -0.277 1.277 10 H -0.274 1.274 11 H -0.236 1.236 12 C 0.495 3.505 13 O -0.599 6.599 14 C -0.121 4.121 15 C 0.080 3.920 16 N -0.526 5.526 17 C 0.032 3.968 18 C -0.108 4.108 19 C -0.150 4.150 20 C 0.114 3.886 21 H 0.074 0.926 22 O -0.588 6.588 23 C 0.057 3.943 24 H 0.082 0.918 25 H 0.064 0.936 26 H 0.091 0.909 27 H 0.052 0.948 28 H 0.017 0.983 29 H 0.269 0.731 30 H 0.111 0.889 31 H 0.131 0.869 32 H 0.073 0.927 33 H 0.015 0.985 34 H 0.099 0.901 35 H 0.022 0.978 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.054 0.946 39 H 0.090 0.910 40 H 0.399 0.601 41 H 0.022 0.978 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.527 -20.883 8.711 25.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.339 5.339 3 C 0.099 3.901 4 C -0.577 4.577 5 H 0.045 0.955 6 C -0.189 4.189 7 N -0.586 5.586 8 Si 0.773 3.227 9 H -0.203 1.203 10 H -0.199 1.199 11 H -0.159 1.159 12 C 0.284 3.716 13 O -0.481 6.481 14 C -0.161 4.161 15 C -0.049 4.049 16 N -0.251 5.251 17 C -0.095 4.095 18 C -0.146 4.146 19 C -0.188 4.188 20 C 0.055 3.945 21 H 0.092 0.908 22 O -0.396 6.396 23 C -0.071 4.071 24 H 0.101 0.899 25 H 0.083 0.917 26 H 0.110 0.890 27 H 0.070 0.930 28 H 0.035 0.965 29 H 0.078 0.922 30 H 0.129 0.871 31 H 0.149 0.851 32 H 0.092 0.908 33 H 0.033 0.967 34 H 0.117 0.883 35 H 0.040 0.960 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.073 0.927 39 H 0.109 0.891 40 H 0.249 0.751 41 H 0.041 0.959 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.651 -20.329 8.978 25.092 hybrid contribution 0.921 0.589 -1.005 1.485 sum -10.730 -19.740 7.973 23.840 Atomic orbital electron populations 1.22004 0.77334 1.04068 1.03164 1.47983 1.08626 1.05880 1.71403 1.19339 0.92793 0.82718 0.95207 1.21583 1.36854 1.06749 0.92470 0.95451 1.25891 0.95267 0.99012 0.98722 1.70056 1.42719 1.24526 1.21342 0.85681 0.79530 0.77701 0.79826 1.20323 1.19910 1.15906 1.21353 0.87792 0.86779 0.75656 1.90639 1.16738 1.88239 1.52494 1.21742 0.98882 0.88823 1.06624 1.21659 0.94844 0.87559 1.00801 1.61963 1.11493 1.01471 1.50208 1.22505 0.93485 1.00915 0.92628 1.21528 0.97375 0.91897 1.03789 1.22311 0.97043 1.00244 0.99183 1.21649 0.89020 0.85262 0.98601 0.90795 1.86430 1.41096 1.18006 1.94109 1.21904 0.95223 0.90352 0.99609 0.89939 0.91674 0.89027 0.92996 0.96468 0.92244 0.87072 0.85079 0.90841 0.96662 0.88251 0.95964 0.89362 0.89868 0.92694 0.89104 0.75073 0.95920 0.91007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.06 10.24 127.77 1.31 3.36 16 2 N -0.61 -24.44 2.86 -851.12 -2.43 -26.87 16 3 C 0.22 10.91 4.23 85.63 0.36 11.27 16 4 C -0.54 -32.10 9.94 25.60 0.25 -31.85 16 5 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 6 C 0.01 0.53 5.47 84.65 0.46 1.00 16 7 N -0.95 -60.54 13.96 21.45 0.30 -60.25 16 8 Si 0.95 44.91 27.47 68.60 1.88 46.79 16 9 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 10 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 11 H -0.24 -9.94 6.54 99.48 0.65 -9.29 16 12 C 0.50 19.97 7.67 87.66 0.67 20.64 16 13 O -0.60 -30.63 15.56 -3.02 -0.05 -30.68 16 14 C -0.12 -3.23 3.50 29.85 0.10 -3.13 16 15 C 0.08 2.29 4.56 86.30 0.39 2.68 16 16 N -0.53 -11.87 4.81 -896.36 -4.31 -16.18 16 17 C 0.03 0.59 4.85 86.32 0.42 1.01 16 18 C -0.11 -1.40 6.09 30.65 0.19 -1.21 16 19 C -0.15 -2.02 5.63 30.67 0.17 -1.85 16 20 C 0.11 1.95 3.63 30.65 0.11 2.06 16 21 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 22 O -0.59 -10.33 13.32 -148.98 -1.98 -12.31 16 23 C 0.06 1.34 5.08 86.33 0.44 1.78 16 24 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.06 1.91 8.07 -2.39 -0.02 1.89 16 26 H 0.09 1.88 6.44 -2.39 -0.02 1.86 16 27 H 0.05 2.32 7.13 -2.38 -0.02 2.30 16 28 H 0.02 0.91 6.85 -2.38 -0.02 0.90 16 29 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 30 H 0.11 2.55 5.46 -2.39 -0.01 2.54 16 31 H 0.13 2.64 8.11 -2.39 -0.02 2.62 16 32 H 0.07 2.28 8.10 -2.39 -0.02 2.26 16 33 H 0.02 0.52 8.04 -2.39 -0.02 0.50 16 34 H 0.10 1.55 5.81 -2.39 -0.01 1.54 16 35 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.40 3.03 9.08 -74.05 -0.67 2.36 16 41 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.07 1.79 8.12 -2.39 -0.02 1.77 16 Total: -1.00 -81.02 332.34 -1.43 -82.45 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 0.27 Total: 11.28 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 4.89 Total: 5.76 kcal Atomic # 7 Polarization: -96.85 SS G_CDS: -6.44 Total: -103.29 kcal Atomic # 8 Polarization: -40.96 SS G_CDS: -2.03 Total: -42.99 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.88 Total: 46.79 kcal Total: -81.02 -1.43 -82.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042468195.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.426 kcal (2) G-P(sol) polarization free energy of solvation -81.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds