Wall clock time and date at job start Mon Mar 30 2020 01:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46896 * 111.00236 * 2 1 4 4 C 1.50696 * 109.47452 * 66.04333 * 3 2 1 5 5 O 1.21284 * 120.00109 * 0.02562 * 4 3 2 6 6 N 1.34777 * 120.00137 * 180.02562 * 4 3 2 7 7 C 1.46506 * 119.99873 * 180.02562 * 6 4 3 8 8 C 1.50699 * 109.46928 * 179.97438 * 7 6 4 9 9 H 1.08003 * 119.99963 * 0.02562 * 8 7 6 10 10 C 1.37873 * 119.99865 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00518 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99987 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46948 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.47174 * 120.00320 * 12 10 8 15 15 H 1.48497 * 109.47378 * 240.00235 * 12 10 8 16 16 C 1.46902 * 110.99844 * 236.03871 * 2 1 3 17 17 C 1.52993 * 109.47410 * 293.95690 * 16 2 1 18 18 H 1.08999 * 109.48195 * 59.97551 * 17 16 2 19 19 C 1.53091 * 109.48104 * 180.02562 * 17 16 2 20 20 C 1.53177 * 109.16608 * 177.59333 * 19 17 16 21 21 C 1.53173 * 109.03327 * 303.01988 * 20 19 17 22 22 C 1.53086 * 109.16832 * 56.97912 * 21 20 19 23 23 O 1.42900 * 109.48148 * 299.94173 * 17 16 2 24 24 H 1.09003 * 109.47089 * 60.00170 * 1 2 3 25 25 H 1.09002 * 109.47337 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47300 * 300.00732 * 1 2 3 27 27 H 1.09000 * 109.47017 * 306.04371 * 3 2 1 28 28 H 1.08996 * 109.47227 * 186.04691 * 3 2 1 29 29 H 0.96999 * 120.00047 * 359.97438 * 6 4 3 30 30 H 1.09004 * 109.47073 * 299.99562 * 7 6 4 31 31 H 1.09000 * 109.47212 * 59.99645 * 7 6 4 32 32 H 0.96992 * 120.00316 * 179.97438 * 11 10 8 33 33 H 1.09000 * 109.46951 * 53.96237 * 16 2 1 34 34 H 1.09003 * 109.46449 * 173.95514 * 16 2 1 35 35 H 1.09010 * 109.51972 * 297.49883 * 19 17 16 36 36 H 1.08999 * 109.52393 * 57.62298 * 19 17 16 37 37 H 1.09005 * 109.54396 * 62.88053 * 20 19 17 38 38 H 1.08993 * 109.54688 * 183.05991 * 20 19 17 39 39 H 1.09009 * 109.52334 * 176.88671 * 21 20 19 40 40 H 1.09001 * 109.52158 * 297.00624 * 21 20 19 41 41 H 1.09001 * 109.48252 * 62.37336 * 22 21 20 42 42 H 1.08997 * 109.48821 * 182.40980 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0472 1.2984 5 8 1.0055 1.4455 2.1410 6 7 2.0181 3.3202 1.5232 7 6 1.6700 3.9770 2.7857 8 6 2.2101 5.3839 2.7856 9 1 2.7574 5.7521 1.9304 10 6 2.0045 6.2012 3.8767 11 7 1.3375 5.7531 4.9178 12 14 2.6745 7.9450 3.8769 13 1 3.3825 8.2033 2.5973 14 1 1.5524 8.9064 4.0241 15 1 3.6208 8.1116 5.0091 16 6 1.9954 -0.7661 -1.1375 17 6 1.6314 -2.2427 -0.9702 18 1 0.5471 -2.3477 -0.9317 19 6 2.1804 -3.0414 -2.1552 20 6 1.8644 -4.5261 -1.9506 21 6 2.4591 -4.9841 -0.6154 22 6 1.8994 -4.1105 0.5102 23 8 2.2018 -2.7397 0.2421 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.5612 1.9273 -0.8309 28 1 3.0797 1.3443 -0.1083 29 1 2.5235 3.8013 0.8494 30 1 0.5858 4.0036 2.8945 31 1 2.1050 3.4212 3.6163 32 1 1.1933 6.3280 5.6855 33 1 1.5611 -0.3874 -2.0628 34 1 3.0797 -0.6612 -1.1755 35 1 1.7136 -2.6932 -3.0767 36 1 3.2598 -2.9032 -2.2189 37 1 0.7840 -4.6705 -1.9372 38 1 2.2997 -5.1070 -2.7636 39 1 2.1917 -6.0255 -0.4356 40 1 3.5443 -4.8871 -0.6477 41 1 0.8186 -4.2401 0.5677 42 1 2.3517 -4.4040 1.4574 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048839872.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:52 Heat of formation + Delta-G solvation = -87.585819 kcal Electronic energy + Delta-G solvation = -20895.435832 eV Core-core repulsion = 17682.196757 eV Total energy + Delta-G solvation = -3213.239075 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.72699 -38.84448 -36.46409 -34.05611 -33.73761 -32.28747 -31.93270 -28.70649 -27.37697 -26.68360 -24.72514 -23.56412 -22.28214 -21.00891 -20.42710 -19.53315 -17.09998 -16.50663 -16.14063 -15.94815 -15.42523 -15.21291 -14.82658 -14.75065 -14.44364 -14.20521 -13.95638 -13.54926 -13.13563 -12.81608 -12.41656 -12.29787 -12.23754 -11.92484 -11.88348 -11.55034 -11.37730 -11.24611 -11.12363 -10.92188 -10.85659 -10.81786 -10.33828 -10.27924 -9.45994 -9.33742 -8.91066 -8.69591 -8.07805 -7.77821 -6.13365 -4.19965 3.25419 3.32303 3.35427 3.48480 3.67142 3.74888 4.29981 4.48775 4.55012 4.61323 4.63110 4.81143 4.95996 5.07533 5.20960 5.22644 5.26642 5.41475 5.43412 5.45177 5.52028 5.55683 5.64436 5.66031 5.70999 5.75937 5.76659 5.82176 5.89986 6.04921 6.37967 7.06190 7.14375 7.33170 7.39141 7.52936 7.57952 7.72997 8.01553 8.70794 8.84512 9.21348 9.47087 10.96940 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.048853 B = 0.002945 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.010453 B = 9505.023233 C = 9676.771377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.512 5.512 3 C 0.036 3.964 4 C 0.499 3.501 5 O -0.537 6.537 6 N -0.717 5.717 7 C 0.251 3.749 8 C -0.541 4.541 9 H 0.063 0.937 10 C 0.063 3.937 11 N -0.886 5.886 12 Si 0.903 3.097 13 H -0.272 1.272 14 H -0.282 1.282 15 H -0.282 1.282 16 C 0.062 3.938 17 C 0.096 3.904 18 H 0.057 0.943 19 C -0.151 4.151 20 C -0.121 4.121 21 C -0.157 4.157 22 C 0.059 3.941 23 O -0.354 6.354 24 H 0.015 0.985 25 H 0.062 0.938 26 H 0.094 0.906 27 H 0.055 0.945 28 H 0.098 0.902 29 H 0.389 0.611 30 H 0.025 0.975 31 H 0.027 0.973 32 H 0.265 0.735 33 H 0.046 0.954 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.046 0.954 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.385 -17.902 -16.357 24.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.235 5.235 3 C -0.095 4.095 4 C 0.283 3.717 5 O -0.414 6.414 6 N -0.366 5.366 7 C 0.130 3.870 8 C -0.580 4.580 9 H 0.081 0.919 10 C -0.141 4.141 11 N -0.523 5.523 12 Si 0.731 3.269 13 H -0.197 1.197 14 H -0.208 1.208 15 H -0.208 1.208 16 C -0.066 4.066 17 C 0.037 3.963 18 H 0.075 0.925 19 C -0.189 4.189 20 C -0.158 4.158 21 C -0.195 4.195 22 C -0.019 4.019 23 O -0.273 6.273 24 H 0.034 0.966 25 H 0.081 0.919 26 H 0.112 0.888 27 H 0.073 0.927 28 H 0.116 0.884 29 H 0.221 0.779 30 H 0.043 0.957 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.065 0.935 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.123 -18.370 -14.975 23.727 hybrid contribution 0.168 1.367 -1.195 1.823 sum 1.291 -17.003 -16.170 23.500 Atomic orbital electron populations 1.22607 0.86800 1.01763 1.01760 1.61513 1.08492 1.11831 1.41706 1.22029 1.01577 0.89550 0.96375 1.20285 0.80664 0.82315 0.88432 1.90626 1.40081 1.64223 1.46502 1.46445 1.55894 1.12518 1.21737 1.19074 0.96401 0.91450 0.80041 1.21275 1.36611 0.97204 1.02883 0.91895 1.24958 0.94995 0.98969 0.95173 1.69985 1.39697 1.36673 1.05957 0.86370 0.78689 0.83774 0.78114 1.19661 1.20846 1.20800 1.22167 1.01120 0.91645 0.91680 1.22090 0.96769 0.92737 0.84696 0.92476 1.22204 1.02414 0.95626 0.98688 1.21558 1.00883 0.95852 0.97541 1.22215 1.01613 0.99879 0.95798 1.22546 0.99184 0.82273 0.97851 1.88130 1.74367 1.24702 1.40062 0.96604 0.91915 0.88799 0.92678 0.88433 0.77900 0.95678 0.95551 0.92534 0.93643 0.90000 0.91074 0.90879 0.91954 0.91614 0.91187 0.91088 0.93546 0.88939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.01 60.06 0.54 0.81 16 2 N -0.51 -7.80 4.37 -244.38 -1.07 -8.87 16 3 C 0.04 0.54 5.45 -4.98 -0.03 0.52 16 4 C 0.50 10.28 7.55 -10.99 -0.08 10.20 16 5 O -0.54 -13.29 14.31 5.55 0.08 -13.21 16 6 N -0.72 -15.39 5.55 -61.47 -0.34 -15.73 16 7 C 0.25 6.78 5.43 -5.19 -0.03 6.75 16 8 C -0.54 -14.88 9.28 -34.44 -0.32 -15.20 16 9 H 0.06 1.62 7.60 -52.48 -0.40 1.22 16 10 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 11 N -0.89 -26.43 13.29 55.43 0.74 -25.70 16 12 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 13 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 16 C 0.06 0.72 4.65 -3.83 -0.02 0.70 16 17 C 0.10 1.05 2.52 -26.69 -0.07 0.98 16 18 H 0.06 0.63 6.47 -51.93 -0.34 0.29 16 19 C -0.15 -1.25 5.42 -26.59 -0.14 -1.40 16 20 C -0.12 -0.90 6.03 -26.55 -0.16 -1.06 16 21 C -0.16 -1.25 6.13 -26.60 -0.16 -1.42 16 22 C 0.06 0.60 6.84 37.20 0.25 0.85 16 23 O -0.35 -4.78 10.27 -35.23 -0.36 -5.14 16 24 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 25 H 0.06 0.84 6.30 -51.93 -0.33 0.51 16 26 H 0.09 1.71 5.88 -51.93 -0.31 1.41 16 27 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16 28 H 0.10 1.29 7.93 -51.93 -0.41 0.88 16 29 H 0.39 7.10 8.32 -40.82 -0.34 6.76 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.05 0.44 8.12 -51.93 -0.42 0.02 16 34 H 0.08 0.91 7.93 -51.93 -0.41 0.50 16 35 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 336.96 15.07 5.08 5.08 Total: -1.00 -33.38 336.96 -8.37 -41.75 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -7.16 Total: 2.39 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -0.31 Total: 3.41 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: -0.67 Total: -50.30 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.28 Total: -18.35 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.38 -8.37 -41.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048839872.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.840 kcal (2) G-P(sol) polarization free energy of solvation -33.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds