Wall clock time and date at job start Mon Mar 30 2020 01:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46896 * 111.00236 * 2 1 4 4 C 1.50696 * 109.47452 * 66.04333 * 3 2 1 5 5 O 1.21284 * 120.00109 * 0.02562 * 4 3 2 6 6 N 1.34777 * 120.00137 * 180.02562 * 4 3 2 7 7 C 1.46506 * 119.99873 * 180.02562 * 6 4 3 8 8 C 1.50699 * 109.46928 * 179.97438 * 7 6 4 9 9 H 1.08003 * 119.99963 * 0.02562 * 8 7 6 10 10 C 1.37873 * 119.99865 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00518 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99987 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46948 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.47174 * 120.00320 * 12 10 8 15 15 H 1.48497 * 109.47378 * 240.00235 * 12 10 8 16 16 C 1.46902 * 110.99844 * 236.03871 * 2 1 3 17 17 C 1.52993 * 109.47410 * 293.95690 * 16 2 1 18 18 H 1.08999 * 109.48195 * 59.97551 * 17 16 2 19 19 C 1.53091 * 109.48104 * 180.02562 * 17 16 2 20 20 C 1.53177 * 109.16608 * 177.59333 * 19 17 16 21 21 C 1.53173 * 109.03327 * 303.01988 * 20 19 17 22 22 C 1.53086 * 109.16832 * 56.97912 * 21 20 19 23 23 O 1.42900 * 109.48148 * 299.94173 * 17 16 2 24 24 H 1.09003 * 109.47089 * 60.00170 * 1 2 3 25 25 H 1.09002 * 109.47337 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47300 * 300.00732 * 1 2 3 27 27 H 1.09000 * 109.47017 * 306.04371 * 3 2 1 28 28 H 1.08996 * 109.47227 * 186.04691 * 3 2 1 29 29 H 0.96999 * 120.00047 * 359.97438 * 6 4 3 30 30 H 1.09004 * 109.47073 * 299.99562 * 7 6 4 31 31 H 1.09000 * 109.47212 * 59.99645 * 7 6 4 32 32 H 0.96992 * 120.00316 * 179.97438 * 11 10 8 33 33 H 1.09000 * 109.46951 * 53.96237 * 16 2 1 34 34 H 1.09003 * 109.46449 * 173.95514 * 16 2 1 35 35 H 1.09010 * 109.51972 * 297.49883 * 19 17 16 36 36 H 1.08999 * 109.52393 * 57.62298 * 19 17 16 37 37 H 1.09005 * 109.54396 * 62.88053 * 20 19 17 38 38 H 1.08993 * 109.54688 * 183.05991 * 20 19 17 39 39 H 1.09009 * 109.52334 * 176.88671 * 21 20 19 40 40 H 1.09001 * 109.52158 * 297.00624 * 21 20 19 41 41 H 1.09001 * 109.48252 * 62.37336 * 22 21 20 42 42 H 1.08997 * 109.48821 * 182.40980 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0472 1.2984 5 8 1.0055 1.4455 2.1410 6 7 2.0181 3.3202 1.5232 7 6 1.6700 3.9770 2.7857 8 6 2.2101 5.3839 2.7856 9 1 2.7574 5.7521 1.9304 10 6 2.0045 6.2012 3.8767 11 7 1.3375 5.7531 4.9178 12 14 2.6745 7.9450 3.8769 13 1 3.3825 8.2033 2.5973 14 1 1.5524 8.9064 4.0241 15 1 3.6208 8.1116 5.0091 16 6 1.9954 -0.7661 -1.1375 17 6 1.6314 -2.2427 -0.9702 18 1 0.5471 -2.3477 -0.9317 19 6 2.1804 -3.0414 -2.1552 20 6 1.8644 -4.5261 -1.9506 21 6 2.4591 -4.9841 -0.6154 22 6 1.8994 -4.1105 0.5102 23 8 2.2018 -2.7397 0.2421 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.5612 1.9273 -0.8309 28 1 3.0797 1.3443 -0.1083 29 1 2.5235 3.8013 0.8494 30 1 0.5858 4.0036 2.8945 31 1 2.1050 3.4212 3.6163 32 1 1.1933 6.3280 5.6855 33 1 1.5611 -0.3874 -2.0628 34 1 3.0797 -0.6612 -1.1755 35 1 1.7136 -2.6932 -3.0767 36 1 3.2598 -2.9032 -2.2189 37 1 0.7840 -4.6705 -1.9372 38 1 2.2997 -5.1070 -2.7636 39 1 2.1917 -6.0255 -0.4356 40 1 3.5443 -4.8871 -0.6477 41 1 0.8186 -4.2401 0.5677 42 1 2.3517 -4.4040 1.4574 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048839872.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:52 Heat of formation + Delta-G solvation = -113.138861 kcal Electronic energy + Delta-G solvation = -20896.543895 eV Core-core repulsion = 17682.196757 eV Total energy + Delta-G solvation = -3214.347138 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.81507 -40.19966 -37.68517 -36.03193 -34.45919 -34.32796 -32.79717 -30.28772 -28.41217 -28.30076 -25.73660 -24.77201 -23.86305 -22.03411 -21.31218 -21.07388 -18.92126 -17.60184 -17.37084 -17.21567 -16.82522 -16.67853 -16.12692 -15.94307 -15.54277 -15.37626 -15.21480 -14.80203 -14.34615 -14.09105 -13.98241 -13.65147 -13.49755 -13.05678 -12.98670 -12.86244 -12.77178 -12.69019 -12.45193 -12.20389 -12.07890 -11.87070 -11.56260 -11.44528 -11.14124 -10.80516 -10.59207 -10.24899 -9.77944 -9.16435 -8.28458 -6.45149 1.43341 1.44826 1.58302 1.84132 2.28735 2.47768 2.91132 3.06326 3.12833 3.82835 3.93173 3.96673 4.02058 4.10440 4.19978 4.26554 4.35507 4.39230 4.46586 4.53478 4.62486 4.68337 4.73401 4.80825 4.91592 4.99230 5.10455 5.12507 5.14029 5.17041 5.22145 5.25827 5.42173 5.51510 5.72744 5.86480 5.99023 6.14106 6.49991 6.66808 6.98950 7.24749 7.57891 8.84145 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.048853 B = 0.002945 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.010453 B = 9505.023233 C = 9676.771377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.541 5.541 3 C 0.051 3.949 4 C 0.493 3.507 5 O -0.585 6.585 6 N -0.710 5.710 7 C 0.268 3.732 8 C -0.554 4.554 9 H 0.085 0.915 10 C 0.001 3.999 11 N -0.933 5.933 12 Si 0.986 3.014 13 H -0.252 1.252 14 H -0.279 1.279 15 H -0.279 1.279 16 C 0.063 3.937 17 C 0.091 3.909 18 H 0.053 0.947 19 C -0.145 4.145 20 C -0.121 4.121 21 C -0.152 4.152 22 C 0.051 3.949 23 O -0.390 6.390 24 H 0.038 0.962 25 H 0.071 0.929 26 H 0.051 0.949 27 H 0.089 0.911 28 H 0.124 0.876 29 H 0.408 0.592 30 H -0.015 1.015 31 H -0.017 1.017 32 H 0.268 0.732 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.066 0.934 41 H 0.046 0.954 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.672 -17.608 -19.426 26.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.265 5.265 3 C -0.080 4.080 4 C 0.280 3.720 5 O -0.466 6.466 6 N -0.362 5.362 7 C 0.145 3.855 8 C -0.591 4.591 9 H 0.103 0.897 10 C -0.198 4.198 11 N -0.571 5.571 12 Si 0.809 3.191 13 H -0.175 1.175 14 H -0.204 1.204 15 H -0.205 1.205 16 C -0.064 4.064 17 C 0.033 3.967 18 H 0.071 0.929 19 C -0.183 4.183 20 C -0.158 4.158 21 C -0.189 4.189 22 C -0.025 4.025 23 O -0.310 6.310 24 H 0.056 0.944 25 H 0.090 0.910 26 H 0.070 0.930 27 H 0.106 0.894 28 H 0.142 0.858 29 H 0.244 0.756 30 H 0.003 0.997 31 H 0.001 0.999 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.085 0.915 41 H 0.065 0.935 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.432 -18.096 -18.107 25.715 hybrid contribution -0.276 1.176 -0.207 1.225 sum 2.157 -16.920 -18.314 25.027 Atomic orbital electron populations 1.22437 0.87111 1.02037 1.00632 1.61420 1.08570 1.12090 1.44461 1.21949 1.03258 0.89596 0.93201 1.21413 0.79044 0.81559 0.90016 1.90613 1.41982 1.65197 1.48759 1.46181 1.56386 1.13217 1.20369 1.18492 0.93613 0.91932 0.81421 1.21660 1.36621 0.97112 1.03749 0.89714 1.26103 0.94989 1.04207 0.94518 1.70152 1.41212 1.38815 1.06954 0.85089 0.77952 0.77124 0.78903 1.17507 1.20444 1.20506 1.22279 1.01441 0.91393 0.91249 1.22230 0.96591 0.92865 0.85041 0.92930 1.22157 1.02329 0.95730 0.98049 1.21590 1.01186 0.95526 0.97530 1.22165 1.01222 1.00219 0.95343 1.22682 0.99368 0.81626 0.98860 1.88070 1.74979 1.26335 1.41587 0.94399 0.91017 0.93050 0.89371 0.85819 0.75645 0.99664 0.99880 0.92284 0.90927 0.89433 0.89208 0.90961 0.91638 0.89961 0.89600 0.91492 0.93535 0.89262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 9.01 127.69 1.15 1.90 16 2 N -0.54 -15.78 4.37 -927.07 -4.05 -19.83 16 3 C 0.05 1.43 5.45 85.56 0.47 1.90 16 4 C 0.49 20.55 7.55 87.66 0.66 21.21 16 5 O -0.59 -30.46 14.31 -3.04 -0.04 -30.51 16 6 N -0.71 -30.81 5.55 -466.77 -2.59 -33.40 16 7 C 0.27 15.15 5.43 85.63 0.46 15.62 16 8 C -0.55 -30.60 9.28 25.60 0.24 -30.36 16 9 H 0.08 4.21 7.60 -2.91 -0.02 4.19 16 10 C 0.00 0.06 5.46 84.65 0.46 0.53 16 11 N -0.93 -57.32 13.29 21.45 0.28 -57.04 16 12 Si 0.99 42.81 29.54 68.60 2.03 44.84 16 13 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 14 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 15 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 16 C 0.06 1.30 4.65 86.30 0.40 1.70 16 17 C 0.09 1.84 2.52 30.62 0.08 1.91 16 18 H 0.05 1.09 6.47 -2.39 -0.02 1.07 16 19 C -0.14 -2.00 5.42 30.68 0.17 -1.83 16 20 C -0.12 -1.49 6.03 30.71 0.19 -1.30 16 21 C -0.15 -2.18 6.13 30.68 0.19 -1.99 16 22 C 0.05 1.03 6.84 72.01 0.49 1.52 16 23 O -0.39 -10.38 10.27 -148.98 -1.53 -11.91 16 24 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.07 1.90 6.30 -2.39 -0.02 1.89 16 26 H 0.05 1.95 5.88 -2.39 -0.01 1.93 16 27 H 0.09 1.96 8.12 -2.39 -0.02 1.94 16 28 H 0.12 2.88 7.93 -2.39 -0.02 2.86 16 29 H 0.41 14.36 8.32 -92.71 -0.77 13.59 16 30 H -0.01 -0.92 8.14 -2.38 -0.02 -0.94 16 31 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 32 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 33 H 0.07 1.11 8.12 -2.39 -0.02 1.09 16 34 H 0.09 1.70 7.93 -2.39 -0.02 1.68 16 35 H 0.09 0.91 8.14 -2.38 -0.02 0.90 16 36 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 38 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 40 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -76.43 336.96 -0.72 -77.16 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 0.22 Total: 19.88 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: 4.95 Total: 10.80 kcal Atomic # 7 Polarization: -103.91 SS G_CDS: -6.35 Total: -110.27 kcal Atomic # 8 Polarization: -40.84 SS G_CDS: -1.57 Total: -42.41 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -76.43 -0.72 -77.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048839872.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.982 kcal (2) G-P(sol) polarization free energy of solvation -76.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds