Wall clock time and date at job start Mon Mar 30 2020 00:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46895 * 109.47263 * 2 1 4 4 C 1.46903 * 110.99999 * 299.29501 * 3 2 1 5 5 C 1.50698 * 109.46988 * 287.20453 * 4 3 2 6 6 O 1.21286 * 120.00190 * 3.05490 * 5 4 3 7 7 N 1.34772 * 120.00163 * 183.05052 * 5 4 3 8 8 C 1.46498 * 120.00295 * 179.97438 * 7 5 4 9 9 C 1.50697 * 109.47453 * 180.02562 * 8 7 5 10 10 H 1.07996 * 120.00014 * 0.02562 * 9 8 7 11 11 C 1.37874 * 120.00307 * 180.02562 * 9 8 7 12 12 N 1.31524 * 120.00047 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00330 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47111 * 60.00268 * 13 11 9 15 15 H 1.48508 * 109.47299 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.46894 * 300.00212 * 13 11 9 17 17 C 1.46901 * 110.99905 * 63.24328 * 3 2 1 18 18 C 1.53001 * 109.46758 * 76.72404 * 17 3 2 19 19 H 1.08994 * 110.68048 * 50.90324 * 18 17 3 20 20 C 1.55000 * 110.61408 * 173.86520 * 18 17 3 21 21 C 1.54820 * 102.11970 * 155.54075 * 20 18 17 22 22 C 1.54093 * 104.18867 * 339.10043 * 21 20 18 23 23 O 1.43748 * 107.29643 * 357.97017 * 22 21 20 24 24 H 1.08994 * 109.47009 * 65.26861 * 1 2 3 25 25 H 1.09001 * 109.46797 * 185.26802 * 1 2 3 26 26 H 1.08999 * 109.46906 * 305.26145 * 1 2 3 27 27 H 1.08999 * 109.47463 * 239.99869 * 2 1 3 28 28 H 1.09003 * 109.47267 * 120.00209 * 2 1 3 29 29 H 1.09005 * 109.47171 * 47.20132 * 4 3 2 30 30 H 1.08998 * 109.47108 * 167.20403 * 4 3 2 31 31 H 0.97007 * 119.99916 * 0.02562 * 7 5 4 32 32 H 1.09007 * 109.47247 * 300.00442 * 8 7 5 33 33 H 1.09006 * 109.47294 * 60.00438 * 8 7 5 34 34 H 0.96996 * 119.99998 * 179.97438 * 12 11 9 35 35 H 1.08998 * 109.47385 * 316.71980 * 17 3 2 36 36 H 1.09000 * 109.47171 * 196.71720 * 17 3 2 37 37 H 1.09000 * 110.91232 * 37.32985 * 20 18 17 38 38 H 1.08997 * 110.90930 * 273.74903 * 20 18 17 39 39 H 1.08998 * 110.48510 * 97.78081 * 21 20 18 40 40 H 1.09006 * 110.48402 * 220.42458 * 21 20 18 41 41 H 1.09002 * 109.88279 * 117.39395 * 22 21 20 42 42 H 1.08998 * 109.88127 * 238.39618 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5625 2.1050 -1.1961 5 6 2.3218 1.6113 -2.4005 6 8 3.1214 0.7067 -2.2844 7 7 2.1125 2.1748 -3.6067 8 6 2.8511 1.6952 -4.7774 9 6 2.4363 2.4857 -5.9915 10 1 1.6969 3.2675 -5.9002 11 6 3.0009 2.2110 -7.2190 12 7 3.9011 1.2586 -7.3305 13 14 2.4873 3.1914 -8.7239 14 1 2.7881 4.6290 -8.5044 15 1 3.2351 2.7043 -9.9109 16 1 1.0301 3.0198 -8.9527 17 6 1.6130 2.0871 1.2246 18 6 2.5004 1.6391 2.3878 19 1 3.5541 1.7163 2.1200 20 6 2.1975 2.4740 3.6581 21 6 2.6542 1.5212 4.7897 22 6 2.6433 0.1258 4.1360 23 8 2.1743 0.2895 2.7871 24 1 -0.3633 0.4299 -0.9334 25 1 -0.3633 -1.0233 0.0944 26 1 -0.3633 0.5933 0.8391 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 0.4966 1.9285 -1.3412 30 1 1.7398 3.1727 -1.0673 31 1 1.4732 2.8985 -3.6995 32 1 3.9206 1.8223 -4.6095 33 1 2.6315 0.6397 -4.9383 34 1 4.2980 1.0651 -8.1941 35 1 0.5727 1.8522 1.4497 36 1 1.7196 3.1621 1.0795 37 1 1.1320 2.6893 3.7373 38 1 2.7804 3.3950 3.6664 39 1 3.6596 1.7787 5.1228 40 1 1.9539 1.5569 5.6243 41 1 3.6514 -0.2887 4.1301 42 1 1.9740 -0.5359 4.6857 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051555186.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:56 Heat of formation + Delta-G solvation = -81.026562 kcal Electronic energy + Delta-G solvation = -21104.557206 eV Core-core repulsion = 17891.602561 eV Total energy + Delta-G solvation = -3212.954645 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.83923 -38.88010 -36.84825 -34.03963 -32.36232 -32.27138 -31.05348 -30.06751 -27.81533 -26.23808 -24.87053 -22.75827 -22.06118 -21.45779 -20.26983 -19.37694 -17.02644 -16.91003 -15.98394 -15.94642 -15.70306 -15.27292 -15.21963 -14.66404 -14.19746 -14.01952 -13.70218 -13.29238 -13.17601 -12.62047 -12.32852 -12.14564 -12.09422 -11.92526 -11.86379 -11.54108 -11.31196 -11.20781 -11.11569 -10.95277 -10.89867 -10.82817 -10.37729 -10.27270 -9.71705 -9.36850 -8.92823 -8.68567 -8.04101 -7.77406 -6.13049 -4.19900 3.27041 3.31687 3.33234 3.50230 3.69126 3.75426 4.29879 4.34941 4.49766 4.61512 4.74190 4.94829 5.03037 5.16676 5.22589 5.26938 5.31239 5.42097 5.43266 5.46526 5.52713 5.56155 5.60637 5.67746 5.69850 5.71311 5.77008 5.93790 6.19759 6.22937 6.60993 6.81626 7.15105 7.25907 7.39412 7.53409 7.58225 7.73199 8.01972 8.71452 8.84875 9.22734 9.47191 10.97147 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.044685 B = 0.003126 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.451398 B = 8954.551377 C = 9016.480921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.045 3.955 3 N -0.514 5.514 4 C 0.028 3.972 5 C 0.499 3.501 6 O -0.537 6.537 7 N -0.718 5.718 8 C 0.252 3.748 9 C -0.543 4.543 10 H 0.062 0.938 11 C 0.063 3.937 12 N -0.886 5.886 13 Si 0.903 3.097 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.276 1.276 17 C 0.054 3.946 18 C 0.085 3.915 19 H 0.080 0.920 20 C -0.150 4.150 21 C -0.155 4.155 22 C 0.045 3.955 23 O -0.368 6.368 24 H 0.052 0.948 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.388 0.612 32 H 0.026 0.974 33 H 0.025 0.975 34 H 0.266 0.734 35 H 0.051 0.949 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.056 0.944 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.677 2.875 22.508 23.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.082 4.082 3 N -0.236 5.236 4 C -0.103 4.103 5 C 0.283 3.717 6 O -0.415 6.415 7 N -0.367 5.367 8 C 0.131 3.869 9 C -0.581 4.581 10 H 0.080 0.920 11 C -0.140 4.140 12 N -0.523 5.523 13 Si 0.731 3.269 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.201 1.201 17 C -0.074 4.074 18 C 0.027 3.973 19 H 0.098 0.902 20 C -0.189 4.189 21 C -0.193 4.193 22 C -0.032 4.032 23 O -0.287 6.287 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.107 0.893 28 H 0.110 0.890 29 H 0.082 0.918 30 H 0.111 0.889 31 H 0.220 0.780 32 H 0.044 0.956 33 H 0.043 0.957 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.075 0.925 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.536 1.934 22.277 23.036 hybrid contribution -1.314 1.066 -0.746 1.849 sum -6.849 3.000 21.531 22.793 Atomic orbital electron populations 1.22408 0.99145 1.02168 1.01101 1.22378 0.91849 0.89337 1.04662 1.61803 1.59473 1.02570 0.99795 1.22112 0.98255 0.99152 0.90764 1.20311 0.83630 0.83555 0.84178 1.90639 1.35765 1.29841 1.85222 1.46443 1.43785 1.37704 1.08792 1.19049 0.91938 0.95326 0.80541 1.21203 1.24733 1.19413 0.92788 0.92014 1.24956 0.94763 0.95255 0.99068 1.69971 1.27015 1.30066 1.25267 0.86485 0.78654 0.80131 0.81674 1.20082 1.21083 1.20110 1.22265 0.97535 0.98194 0.89404 1.23218 0.99629 0.81462 0.93003 0.90184 1.23144 1.02322 0.98949 0.94443 1.22914 1.02254 0.95317 0.98807 1.23104 0.99602 0.96721 0.83803 1.88937 1.81092 1.30760 1.27957 0.92932 0.92207 0.92715 0.89348 0.88992 0.91816 0.88854 0.77972 0.95628 0.95706 0.92422 0.93090 0.89803 0.90604 0.90138 0.90767 0.90745 0.92539 0.90278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.41 9.28 37.16 0.34 -2.07 16 2 C 0.05 0.69 5.58 -3.83 -0.02 0.67 16 3 N -0.51 -7.63 4.27 -236.07 -1.01 -8.64 16 4 C 0.03 0.42 5.31 -4.98 -0.03 0.40 16 5 C 0.50 10.23 7.62 -10.99 -0.08 10.14 16 6 O -0.54 -13.31 14.74 5.55 0.08 -13.22 16 7 N -0.72 -15.37 5.55 -61.47 -0.34 -15.71 16 8 C 0.25 6.81 5.43 -5.20 -0.03 6.78 16 9 C -0.54 -14.92 9.28 -34.44 -0.32 -15.24 16 10 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 11 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 12 N -0.89 -26.44 13.29 55.43 0.74 -25.71 16 13 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 14 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 15 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 17 C 0.05 0.61 4.73 -3.82 -0.02 0.59 16 18 C 0.08 0.91 3.50 -25.67 -0.09 0.82 16 19 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 20 C -0.15 -1.17 6.58 -24.72 -0.16 -1.33 16 21 C -0.16 -1.10 7.01 -25.20 -0.18 -1.27 16 22 C 0.04 0.40 7.70 37.73 0.29 0.69 16 23 O -0.37 -4.43 8.77 -35.23 -0.31 -4.74 16 24 H 0.05 0.68 6.44 -51.93 -0.33 0.35 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.63 5.96 -51.93 -0.31 0.32 16 27 H 0.09 1.64 6.37 -51.93 -0.33 1.31 16 28 H 0.09 1.41 5.67 -51.93 -0.29 1.12 16 29 H 0.06 0.85 5.86 -51.93 -0.30 0.54 16 30 H 0.09 1.16 7.65 -51.93 -0.40 0.76 16 31 H 0.39 7.06 8.32 -40.82 -0.34 6.72 16 32 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.05 0.55 5.69 -51.93 -0.30 0.26 16 36 H 0.08 0.80 7.62 -51.93 -0.40 0.40 16 37 H 0.08 0.55 8.06 -51.93 -0.42 0.13 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 331.80 15.07 5.00 5.00 Total: -1.00 -32.94 331.80 -8.01 -40.95 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -6.76 Total: 4.20 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: -0.39 Total: 1.86 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: -0.61 Total: -50.05 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -0.23 Total: -17.96 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.94 -8.01 -40.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051555186.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.078 kcal (2) G-P(sol) polarization free energy of solvation -32.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds