Wall clock time and date at job start Mon Mar 30 2020 00:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46895 * 109.47263 * 2 1 4 4 C 1.46903 * 110.99999 * 299.29501 * 3 2 1 5 5 C 1.50698 * 109.46988 * 287.20453 * 4 3 2 6 6 O 1.21286 * 120.00190 * 3.05490 * 5 4 3 7 7 N 1.34772 * 120.00163 * 183.05052 * 5 4 3 8 8 C 1.46498 * 120.00295 * 179.97438 * 7 5 4 9 9 C 1.50697 * 109.47453 * 180.02562 * 8 7 5 10 10 H 1.07996 * 120.00014 * 0.02562 * 9 8 7 11 11 C 1.37874 * 120.00307 * 180.02562 * 9 8 7 12 12 N 1.31524 * 120.00047 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00330 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47111 * 60.00268 * 13 11 9 15 15 H 1.48508 * 109.47299 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.46894 * 300.00212 * 13 11 9 17 17 C 1.46901 * 110.99905 * 63.24328 * 3 2 1 18 18 C 1.53001 * 109.46758 * 76.72404 * 17 3 2 19 19 H 1.08994 * 110.68048 * 50.90324 * 18 17 3 20 20 C 1.55000 * 110.61408 * 173.86520 * 18 17 3 21 21 C 1.54820 * 102.11970 * 155.54075 * 20 18 17 22 22 C 1.54093 * 104.18867 * 339.10043 * 21 20 18 23 23 O 1.43748 * 107.29643 * 357.97017 * 22 21 20 24 24 H 1.08994 * 109.47009 * 65.26861 * 1 2 3 25 25 H 1.09001 * 109.46797 * 185.26802 * 1 2 3 26 26 H 1.08999 * 109.46906 * 305.26145 * 1 2 3 27 27 H 1.08999 * 109.47463 * 239.99869 * 2 1 3 28 28 H 1.09003 * 109.47267 * 120.00209 * 2 1 3 29 29 H 1.09005 * 109.47171 * 47.20132 * 4 3 2 30 30 H 1.08998 * 109.47108 * 167.20403 * 4 3 2 31 31 H 0.97007 * 119.99916 * 0.02562 * 7 5 4 32 32 H 1.09007 * 109.47247 * 300.00442 * 8 7 5 33 33 H 1.09006 * 109.47294 * 60.00438 * 8 7 5 34 34 H 0.96996 * 119.99998 * 179.97438 * 12 11 9 35 35 H 1.08998 * 109.47385 * 316.71980 * 17 3 2 36 36 H 1.09000 * 109.47171 * 196.71720 * 17 3 2 37 37 H 1.09000 * 110.91232 * 37.32985 * 20 18 17 38 38 H 1.08997 * 110.90930 * 273.74903 * 20 18 17 39 39 H 1.08998 * 110.48510 * 97.78081 * 21 20 18 40 40 H 1.09006 * 110.48402 * 220.42458 * 21 20 18 41 41 H 1.09002 * 109.88279 * 117.39395 * 22 21 20 42 42 H 1.08998 * 109.88127 * 238.39618 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5625 2.1050 -1.1961 5 6 2.3218 1.6113 -2.4005 6 8 3.1214 0.7067 -2.2844 7 7 2.1125 2.1748 -3.6067 8 6 2.8511 1.6952 -4.7774 9 6 2.4363 2.4857 -5.9915 10 1 1.6969 3.2675 -5.9002 11 6 3.0009 2.2110 -7.2190 12 7 3.9011 1.2586 -7.3305 13 14 2.4873 3.1914 -8.7239 14 1 2.7881 4.6290 -8.5044 15 1 3.2351 2.7043 -9.9109 16 1 1.0301 3.0198 -8.9527 17 6 1.6130 2.0871 1.2246 18 6 2.5004 1.6391 2.3878 19 1 3.5541 1.7163 2.1200 20 6 2.1975 2.4740 3.6581 21 6 2.6542 1.5212 4.7897 22 6 2.6433 0.1258 4.1360 23 8 2.1743 0.2895 2.7871 24 1 -0.3633 0.4299 -0.9334 25 1 -0.3633 -1.0233 0.0944 26 1 -0.3633 0.5933 0.8391 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 0.4966 1.9285 -1.3412 30 1 1.7398 3.1727 -1.0673 31 1 1.4732 2.8985 -3.6995 32 1 3.9206 1.8223 -4.6095 33 1 2.6315 0.6397 -4.9383 34 1 4.2980 1.0651 -8.1941 35 1 0.5727 1.8522 1.4497 36 1 1.7196 3.1621 1.0795 37 1 1.1320 2.6893 3.7373 38 1 2.7804 3.3950 3.6664 39 1 3.6596 1.7787 5.1228 40 1 1.9539 1.5569 5.6243 41 1 3.6514 -0.2887 4.1301 42 1 1.9740 -0.5359 4.6857 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051555186.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:55 Heat of formation + Delta-G solvation = -106.192787 kcal Electronic energy + Delta-G solvation = -21105.648495 eV Core-core repulsion = 17891.602561 eV Total energy + Delta-G solvation = -3214.045934 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.92119 -40.17820 -38.11203 -36.03278 -34.31924 -33.07786 -31.90638 -31.32343 -29.48825 -27.61944 -25.88111 -24.60341 -23.10246 -22.20987 -21.49883 -20.91886 -18.82857 -17.82301 -17.47352 -17.17863 -16.82151 -16.69993 -16.36101 -16.07105 -15.65085 -15.52942 -14.72751 -14.58981 -14.26206 -14.05425 -13.91002 -13.67906 -13.30783 -12.98514 -12.91903 -12.86767 -12.66110 -12.57136 -12.27568 -12.19500 -12.04109 -11.97841 -11.59887 -11.49876 -11.44784 -10.77834 -10.61418 -10.52609 -9.77389 -9.14839 -8.28028 -6.45086 1.43147 1.47700 1.55843 1.86266 2.29330 2.48633 2.99866 3.06450 3.12439 3.71557 3.91532 4.01671 4.07326 4.13917 4.16075 4.29784 4.32861 4.41588 4.50642 4.53687 4.56736 4.66704 4.75287 4.87100 4.97436 4.99973 5.07623 5.11077 5.13768 5.22920 5.25907 5.27449 5.44893 5.51694 5.73376 5.86672 5.98439 6.13899 6.20768 6.66556 7.00462 7.24880 7.59511 8.84116 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.044685 B = 0.003126 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.451398 B = 8954.551377 C = 9016.480921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.051 3.949 3 N -0.538 5.538 4 C 0.043 3.957 5 C 0.493 3.507 6 O -0.587 6.587 7 N -0.711 5.711 8 C 0.270 3.730 9 C -0.556 4.556 10 H 0.085 0.915 11 C 0.002 3.998 12 N -0.933 5.933 13 Si 0.986 3.014 14 H -0.261 1.261 15 H -0.286 1.286 16 H -0.261 1.261 17 C 0.057 3.943 18 C 0.078 3.922 19 H 0.058 0.942 20 C -0.141 4.141 21 C -0.150 4.150 22 C 0.036 3.964 23 O -0.394 6.394 24 H 0.050 0.950 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.044 0.956 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.129 0.871 31 H 0.408 0.592 32 H -0.016 1.016 33 H -0.017 1.017 34 H 0.268 0.732 35 H 0.062 0.938 36 H 0.108 0.892 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.050 0.950 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.935 5.540 23.639 25.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.077 4.077 3 N -0.261 5.261 4 C -0.087 4.087 5 C 0.280 3.720 6 O -0.468 6.468 7 N -0.362 5.362 8 C 0.147 3.853 9 C -0.594 4.594 10 H 0.103 0.897 11 C -0.198 4.198 12 N -0.571 5.571 13 Si 0.809 3.191 14 H -0.185 1.185 15 H -0.212 1.212 16 H -0.186 1.186 17 C -0.070 4.070 18 C 0.020 3.980 19 H 0.076 0.924 20 C -0.179 4.179 21 C -0.188 4.188 22 C -0.041 4.041 23 O -0.314 6.314 24 H 0.069 0.931 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.063 0.937 28 H 0.105 0.895 29 H 0.107 0.893 30 H 0.147 0.853 31 H 0.243 0.757 32 H 0.002 0.998 33 H 0.001 0.999 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.126 0.874 37 H 0.105 0.895 38 H 0.112 0.888 39 H 0.099 0.901 40 H 0.109 0.891 41 H 0.069 0.931 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.833 4.634 23.455 25.159 hybrid contribution -0.543 0.148 -1.012 1.158 sum -8.376 4.782 22.443 24.428 Atomic orbital electron populations 1.22302 0.96850 1.02912 1.01704 1.22164 0.93651 0.89672 1.02207 1.61702 1.60640 1.02591 1.01181 1.22044 0.98202 1.00559 0.87922 1.21459 0.82980 0.82323 0.85206 1.90624 1.38100 1.32030 1.86017 1.46179 1.43795 1.38392 1.07869 1.18466 0.90286 0.93435 0.83158 1.21608 1.25137 1.19775 0.92860 0.89687 1.26107 0.94421 0.96236 1.02996 1.70148 1.28543 1.32125 1.26320 0.85192 0.78697 0.78678 0.76545 1.18517 1.21168 1.18602 1.22389 0.98055 0.99068 0.87530 1.23256 0.98383 0.81889 0.94424 0.92412 1.23114 1.03269 0.98960 0.92592 1.22913 1.03235 0.93684 0.98929 1.23281 0.99522 0.98355 0.82937 1.88902 1.81283 1.31672 1.29590 0.93108 0.91778 0.90807 0.93720 0.89534 0.89308 0.85316 0.75671 0.99837 0.99908 0.92282 0.91960 0.87401 0.89502 0.88754 0.90053 0.89061 0.93135 0.89234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.30 9.28 71.98 0.67 -3.63 16 2 C 0.05 1.57 5.58 86.30 0.48 2.05 16 3 N -0.54 -15.48 4.27 -900.79 -3.85 -19.33 16 4 C 0.04 1.20 5.31 85.56 0.45 1.66 16 5 C 0.49 20.51 7.62 87.66 0.67 21.18 16 6 O -0.59 -30.71 14.74 -3.05 -0.04 -30.75 16 7 N -0.71 -30.74 5.55 -466.79 -2.59 -33.33 16 8 C 0.27 15.22 5.43 85.63 0.46 15.68 16 9 C -0.56 -30.71 9.28 25.60 0.24 -30.47 16 10 H 0.09 4.19 7.60 -2.91 -0.02 4.17 16 11 C 0.00 0.10 5.46 84.65 0.46 0.56 16 12 N -0.93 -57.38 13.29 21.45 0.28 -57.10 16 13 Si 0.99 42.68 29.54 68.60 2.03 44.71 16 14 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 15 H -0.29 -12.32 7.11 99.48 0.71 -11.62 16 16 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 17 C 0.06 1.13 4.73 86.30 0.41 1.54 16 18 C 0.08 1.58 3.50 31.28 0.11 1.69 16 19 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 20 C -0.14 -1.79 6.58 31.90 0.21 -1.58 16 21 C -0.15 -1.76 7.01 31.59 0.22 -1.54 16 22 C 0.04 0.60 7.70 72.35 0.56 1.15 16 23 O -0.39 -9.23 8.77 -148.98 -1.31 -10.54 16 24 H 0.05 1.23 6.44 -2.39 -0.02 1.21 16 25 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.07 1.49 5.96 -2.39 -0.01 1.48 16 27 H 0.04 1.76 6.37 -2.39 -0.02 1.74 16 28 H 0.09 2.74 5.67 -2.39 -0.01 2.73 16 29 H 0.09 2.08 5.86 -2.38 -0.01 2.07 16 30 H 0.13 2.71 7.65 -2.39 -0.02 2.69 16 31 H 0.41 14.26 8.32 -92.70 -0.77 13.49 16 32 H -0.02 -1.04 8.14 -2.38 -0.02 -1.06 16 33 H -0.02 -1.09 8.14 -2.38 -0.02 -1.11 16 34 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 35 H 0.06 1.12 5.69 -2.39 -0.01 1.11 16 36 H 0.11 1.62 7.62 -2.39 -0.02 1.60 16 37 H 0.09 0.94 8.06 -2.39 -0.02 0.92 16 38 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 41 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -76.11 331.80 -0.29 -76.41 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: 0.24 Total: 21.64 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: 4.94 Total: 8.29 kcal Atomic # 7 Polarization: -103.60 SS G_CDS: -6.15 Total: -109.76 kcal Atomic # 8 Polarization: -39.94 SS G_CDS: -1.35 Total: -41.29 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -76.11 -0.29 -76.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051555186.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.786 kcal (2) G-P(sol) polarization free energy of solvation -76.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds