Wall clock time and date at job start Mon Mar 30 2020 00:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46903 * 109.47085 * 2 1 4 4 C 1.46896 * 110.99905 * 297.50956 * 3 2 1 5 5 C 1.50696 * 109.47202 * 292.34133 * 4 3 2 6 6 H 1.08001 * 119.99925 * 354.95996 * 5 4 3 7 7 C 1.37875 * 120.00128 * 174.95839 * 5 4 3 8 8 N 1.31511 * 120.00297 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00039 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47583 * 60.00042 * 9 7 5 11 11 H 1.48504 * 109.47278 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47278 * 299.99965 * 9 7 5 13 13 C 1.46906 * 110.99642 * 61.46102 * 3 2 1 14 14 C 1.50704 * 109.47100 * 66.04982 * 13 3 2 15 15 O 1.21273 * 119.99957 * 359.97438 * 14 13 3 16 16 N 1.34775 * 119.99726 * 180.02562 * 14 13 3 17 17 C 1.46501 * 119.99713 * 180.02562 * 16 14 13 18 18 C 1.53174 * 109.54335 * 85.44006 * 17 16 14 19 19 C 1.53095 * 109.16196 * 176.84781 * 18 17 16 20 20 O 1.42902 * 109.41626 * 302.39055 * 19 18 17 21 21 C 1.42906 * 114.09705 * 61.15696 * 20 19 18 22 22 C 1.53090 * 109.41468 * 298.84315 * 21 20 19 23 23 H 1.09003 * 109.46758 * 179.08651 * 1 2 3 24 24 H 1.09001 * 109.47254 * 299.08351 * 1 2 3 25 25 H 1.09002 * 109.47230 * 59.08533 * 1 2 3 26 26 H 1.08994 * 109.47192 * 240.00324 * 2 1 3 27 27 H 1.09000 * 109.47359 * 119.99854 * 2 1 3 28 28 H 1.08999 * 109.47074 * 52.34684 * 4 3 2 29 29 H 1.09001 * 109.46876 * 172.34629 * 4 3 2 30 30 H 0.96996 * 120.00989 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.47221 * 306.04675 * 13 3 2 32 32 H 1.09003 * 109.46878 * 186.04395 * 13 3 2 33 33 H 0.96994 * 120.00392 * 359.97438 * 16 14 13 34 34 H 1.08997 * 109.61237 * 325.21749 * 17 16 14 35 35 H 1.08997 * 109.52618 * 296.74916 * 18 17 16 36 36 H 1.09004 * 109.52608 * 56.94535 * 18 17 16 37 37 H 1.08999 * 109.47998 * 182.40942 * 19 18 17 38 38 H 1.09005 * 109.48082 * 62.37147 * 19 18 17 39 39 H 1.09002 * 109.47971 * 178.86164 * 21 20 19 40 40 H 1.08999 * 109.48918 * 58.83063 * 21 20 19 41 41 H 1.09004 * 109.52699 * 297.70411 * 22 21 20 42 42 H 1.09001 * 109.52358 * 177.51191 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5979 2.0925 -1.2163 5 6 2.3002 1.5003 -2.4109 6 1 3.0508 0.7362 -2.2721 7 6 1.9846 1.9339 -3.6811 8 7 1.0710 2.8647 -3.8502 9 14 2.8547 1.1994 -5.1619 10 1 2.6023 -0.2632 -5.2092 11 1 2.3382 1.8306 -6.4029 12 1 4.3148 1.4464 -5.0510 13 6 1.5774 2.0997 1.2049 14 6 2.2290 1.4891 2.4188 15 8 2.9868 0.5507 2.2927 16 7 1.9688 1.9852 3.6446 17 6 2.6027 1.3920 4.8246 18 6 3.9833 2.0212 5.0354 19 6 4.6046 1.4528 6.3140 20 8 3.7355 1.7089 7.4190 21 6 2.4457 1.1053 7.2990 22 6 1.7377 1.6597 6.0601 23 1 -0.3633 -1.0276 -0.0164 24 1 -0.3634 0.4995 0.8981 25 1 -0.3634 0.5280 -0.8817 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 0.5199 1.9900 -1.3409 29 1 1.8551 3.1482 -1.1302 30 1 0.8492 3.1701 -4.7437 31 1 0.4940 2.0220 1.2963 32 1 1.8613 3.1494 1.1294 33 1 1.3624 2.7355 3.7455 34 1 2.7101 0.3169 4.6807 35 1 4.6236 1.7882 4.1847 36 1 3.8804 3.1022 5.1299 37 1 5.5689 1.9287 6.4921 38 1 4.7445 0.3775 6.2033 39 1 1.8548 1.3309 8.1868 40 1 2.5573 0.0255 7.2013 41 1 1.5894 2.7335 6.1751 42 1 0.7719 1.1683 5.9420 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062768922.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:14 Heat of formation + Delta-G solvation = -81.096866 kcal Electronic energy + Delta-G solvation = -21346.824087 eV Core-core repulsion = 18133.866394 eV Total energy + Delta-G solvation = -3212.957693 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.15805 -38.92946 -36.67387 -35.05194 -32.56558 -31.78636 -31.38149 -29.62344 -28.12682 -25.56187 -24.11490 -23.85509 -23.05510 -20.70736 -20.51820 -19.26237 -16.98552 -16.63554 -16.26854 -16.09361 -15.62654 -15.39509 -14.94664 -14.68667 -14.56832 -14.07259 -13.74272 -13.45376 -13.35778 -12.76425 -12.61726 -12.24842 -11.80554 -11.73816 -11.60597 -11.46954 -11.16635 -11.13407 -10.86985 -10.75666 -10.65091 -10.53697 -10.05379 -9.99252 -9.88452 -9.36823 -9.07424 -8.92338 -8.40900 -7.14829 -6.00988 -4.01270 2.97724 3.19720 3.36332 3.39466 3.43952 3.61394 4.40947 4.45481 4.58425 4.67829 4.87151 4.95025 5.02051 5.10266 5.19515 5.33884 5.35262 5.39692 5.46965 5.56580 5.70536 5.73166 5.77224 5.87963 5.93275 6.03614 6.08525 6.19832 6.46782 6.58708 6.71468 6.90359 7.02984 7.28091 7.42812 7.61164 7.84964 8.09717 8.21550 8.51676 8.60013 9.07216 9.62718 11.09770 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.039095 B = 0.003503 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.040895 B = 7990.657747 C = 8200.621331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.056 3.944 3 N -0.517 5.517 4 C 0.188 3.812 5 C -0.503 4.503 6 H 0.064 0.936 7 C 0.055 3.945 8 N -0.901 5.901 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.276 1.276 13 C 0.032 3.968 14 C 0.516 3.484 15 O -0.518 6.518 16 N -0.737 5.737 17 C 0.146 3.854 18 C -0.167 4.167 19 C 0.064 3.936 20 O -0.385 6.385 21 C 0.065 3.935 22 C -0.163 4.163 23 H 0.047 0.953 24 H 0.039 0.961 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.005 0.995 29 H 0.024 0.976 30 H 0.261 0.739 31 H 0.056 0.944 32 H 0.095 0.905 33 H 0.398 0.602 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.053 0.947 39 H 0.097 0.903 40 H 0.053 0.947 41 H 0.077 0.923 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.487 -1.305 20.781 20.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.073 4.073 3 N -0.241 5.241 4 C 0.064 3.936 5 C -0.541 4.541 6 H 0.082 0.918 7 C -0.146 4.146 8 N -0.541 5.541 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.202 1.202 13 C -0.100 4.100 14 C 0.303 3.697 15 O -0.392 6.392 16 N -0.391 5.391 17 C 0.041 3.959 18 C -0.206 4.206 19 C -0.014 4.014 20 O -0.303 6.303 21 C -0.012 4.012 22 C -0.202 4.202 23 H 0.066 0.934 24 H 0.058 0.942 25 H 0.087 0.913 26 H 0.098 0.902 27 H 0.089 0.911 28 H 0.022 0.978 29 H 0.042 0.958 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.113 0.887 33 H 0.231 0.769 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.114 0.886 38 H 0.071 0.929 39 H 0.115 0.885 40 H 0.071 0.929 41 H 0.096 0.904 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.559 -1.801 20.657 20.743 hybrid contribution -0.961 0.062 -1.152 1.502 sum -0.403 -1.739 19.505 19.586 Atomic orbital electron populations 1.22422 0.99955 1.01034 1.01419 1.22118 0.91302 0.91094 1.02746 1.62099 1.59101 1.01974 1.00892 1.19832 0.94905 0.93632 0.85251 1.21108 1.21271 1.21775 0.89987 0.91828 1.24967 0.95336 0.95288 0.99008 1.69937 1.32078 1.29606 1.22512 0.86557 0.79988 0.79267 0.81589 1.20270 1.21435 1.20160 1.21984 0.97788 0.99529 0.90671 1.21041 0.81392 0.83226 0.84013 1.90634 1.35278 1.27610 1.85680 1.46142 1.49684 1.37259 1.06018 1.20845 0.91775 0.98909 0.84357 1.22624 0.97532 1.01508 0.98972 1.22585 0.93375 0.99963 0.85440 1.87929 1.24445 1.75112 1.42835 1.22523 0.84282 0.96765 0.97673 1.22500 0.99719 1.03004 0.94938 0.93354 0.94247 0.91343 0.90167 0.91104 0.97769 0.95767 0.92933 0.92627 0.88720 0.76875 0.89508 0.89917 0.90869 0.88577 0.92860 0.88529 0.92882 0.90442 0.90206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.51 9.26 37.16 0.34 -3.16 16 2 C 0.06 1.16 5.55 -3.82 -0.02 1.14 16 3 N -0.52 -11.44 4.43 -237.51 -1.05 -12.49 16 4 C 0.19 4.85 4.54 -4.98 -0.02 4.82 16 5 C -0.50 -14.24 8.40 -34.44 -0.29 -14.53 16 6 H 0.06 1.82 7.42 -52.49 -0.39 1.43 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.60 13.29 55.43 0.74 -25.86 16 9 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.03 0.56 5.23 -4.97 -0.03 0.53 16 14 C 0.52 8.38 7.52 -10.98 -0.08 8.30 16 15 O -0.52 -10.29 13.98 5.56 0.08 -10.22 16 16 N -0.74 -8.65 5.08 -53.63 -0.27 -8.92 16 17 C 0.15 1.56 2.54 -67.75 -0.17 1.39 16 18 C -0.17 -1.77 5.72 -26.59 -0.15 -1.93 16 19 C 0.06 0.59 6.84 37.21 0.25 0.85 16 20 O -0.38 -3.86 10.77 -35.23 -0.38 -4.24 16 21 C 0.06 0.50 6.84 37.20 0.25 0.76 16 22 C -0.16 -1.29 5.61 -26.59 -0.15 -1.43 16 23 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.04 0.65 6.35 -51.93 -0.33 0.32 16 25 H 0.07 1.43 6.26 -51.93 -0.32 1.10 16 26 H 0.08 1.83 7.01 -51.93 -0.36 1.46 16 27 H 0.07 1.46 5.86 -51.93 -0.30 1.15 16 28 H 0.00 0.12 5.99 -51.93 -0.31 -0.19 16 29 H 0.02 0.66 7.90 -51.93 -0.41 0.25 16 30 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.06 0.89 6.06 -51.93 -0.31 0.58 16 32 H 0.09 1.55 7.91 -51.93 -0.41 1.14 16 33 H 0.40 3.60 8.61 -40.82 -0.35 3.25 16 34 H 0.09 1.09 7.58 -51.93 -0.39 0.69 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 330.44 15.07 4.98 4.98 Total: -1.00 -32.48 330.44 -7.93 -40.42 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -6.84 Total: 1.26 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -0.16 Total: -1.80 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: -0.59 Total: -47.28 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.30 Total: -14.45 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.48 -7.93 -40.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062768922.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.681 kcal (2) G-P(sol) polarization free energy of solvation -32.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds