Wall clock time and date at job start Mon Mar 30 2020 00:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46903 * 109.47085 * 2 1 4 4 C 1.46896 * 110.99905 * 297.50956 * 3 2 1 5 5 C 1.50696 * 109.47202 * 292.34133 * 4 3 2 6 6 H 1.08001 * 119.99925 * 354.95996 * 5 4 3 7 7 C 1.37875 * 120.00128 * 174.95839 * 5 4 3 8 8 N 1.31511 * 120.00297 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00039 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47583 * 60.00042 * 9 7 5 11 11 H 1.48504 * 109.47278 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47278 * 299.99965 * 9 7 5 13 13 C 1.46906 * 110.99642 * 61.46102 * 3 2 1 14 14 C 1.50704 * 109.47100 * 66.04982 * 13 3 2 15 15 O 1.21273 * 119.99957 * 359.97438 * 14 13 3 16 16 N 1.34775 * 119.99726 * 180.02562 * 14 13 3 17 17 C 1.46501 * 119.99713 * 180.02562 * 16 14 13 18 18 C 1.53174 * 109.54335 * 85.44006 * 17 16 14 19 19 C 1.53095 * 109.16196 * 176.84781 * 18 17 16 20 20 O 1.42902 * 109.41626 * 302.39055 * 19 18 17 21 21 C 1.42906 * 114.09705 * 61.15696 * 20 19 18 22 22 C 1.53090 * 109.41468 * 298.84315 * 21 20 19 23 23 H 1.09003 * 109.46758 * 179.08651 * 1 2 3 24 24 H 1.09001 * 109.47254 * 299.08351 * 1 2 3 25 25 H 1.09002 * 109.47230 * 59.08533 * 1 2 3 26 26 H 1.08994 * 109.47192 * 240.00324 * 2 1 3 27 27 H 1.09000 * 109.47359 * 119.99854 * 2 1 3 28 28 H 1.08999 * 109.47074 * 52.34684 * 4 3 2 29 29 H 1.09001 * 109.46876 * 172.34629 * 4 3 2 30 30 H 0.96996 * 120.00989 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.47221 * 306.04675 * 13 3 2 32 32 H 1.09003 * 109.46878 * 186.04395 * 13 3 2 33 33 H 0.96994 * 120.00392 * 359.97438 * 16 14 13 34 34 H 1.08997 * 109.61237 * 325.21749 * 17 16 14 35 35 H 1.08997 * 109.52618 * 296.74916 * 18 17 16 36 36 H 1.09004 * 109.52608 * 56.94535 * 18 17 16 37 37 H 1.08999 * 109.47998 * 182.40942 * 19 18 17 38 38 H 1.09005 * 109.48082 * 62.37147 * 19 18 17 39 39 H 1.09002 * 109.47971 * 178.86164 * 21 20 19 40 40 H 1.08999 * 109.48918 * 58.83063 * 21 20 19 41 41 H 1.09004 * 109.52699 * 297.70411 * 22 21 20 42 42 H 1.09001 * 109.52358 * 177.51191 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5979 2.0925 -1.2163 5 6 2.3002 1.5003 -2.4109 6 1 3.0508 0.7362 -2.2721 7 6 1.9846 1.9339 -3.6811 8 7 1.0710 2.8647 -3.8502 9 14 2.8547 1.1994 -5.1619 10 1 2.6023 -0.2632 -5.2092 11 1 2.3382 1.8306 -6.4029 12 1 4.3148 1.4464 -5.0510 13 6 1.5774 2.0997 1.2049 14 6 2.2290 1.4891 2.4188 15 8 2.9868 0.5507 2.2927 16 7 1.9688 1.9852 3.6446 17 6 2.6027 1.3920 4.8246 18 6 3.9833 2.0212 5.0354 19 6 4.6046 1.4528 6.3140 20 8 3.7355 1.7089 7.4190 21 6 2.4457 1.1053 7.2990 22 6 1.7377 1.6597 6.0601 23 1 -0.3633 -1.0276 -0.0164 24 1 -0.3634 0.4995 0.8981 25 1 -0.3634 0.5280 -0.8817 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 0.5199 1.9900 -1.3409 29 1 1.8551 3.1482 -1.1302 30 1 0.8492 3.1701 -4.7437 31 1 0.4940 2.0220 1.2963 32 1 1.8613 3.1494 1.1294 33 1 1.3624 2.7355 3.7455 34 1 2.7101 0.3169 4.6807 35 1 4.6236 1.7882 4.1847 36 1 3.8804 3.1022 5.1299 37 1 5.5689 1.9287 6.4921 38 1 4.7445 0.3775 6.2033 39 1 1.8548 1.3309 8.1868 40 1 2.5573 0.0255 7.2013 41 1 1.5894 2.7335 6.1751 42 1 0.7719 1.1683 5.9420 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062768922.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:14 Heat of formation + Delta-G solvation = -105.426451 kcal Electronic energy + Delta-G solvation = -21347.879097 eV Core-core repulsion = 18133.866394 eV Total energy + Delta-G solvation = -3214.012703 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.24318 -39.97189 -38.24126 -36.14456 -34.69742 -32.82547 -32.08410 -31.19738 -29.91154 -27.15062 -25.16395 -24.95375 -24.58420 -22.01585 -21.51896 -20.73891 -18.43473 -17.89013 -17.73512 -17.11479 -16.93605 -16.52504 -16.36237 -16.17185 -15.71403 -15.38656 -14.98982 -14.65337 -14.46316 -14.37762 -14.06630 -13.41731 -13.33261 -13.12446 -12.91771 -12.71858 -12.64304 -12.53073 -12.43498 -12.31483 -11.95976 -11.94401 -11.56228 -11.41745 -11.37706 -10.85270 -10.58434 -10.44496 -10.04558 -8.89073 -8.18638 -6.26970 1.40828 1.43289 1.51285 1.68093 2.09211 2.42366 2.94563 3.13775 3.40839 3.66142 3.80098 3.92255 4.00126 4.10480 4.22966 4.26441 4.29612 4.44060 4.46476 4.54658 4.57229 4.65607 4.71685 4.78577 4.84361 4.90947 4.99667 5.04566 5.08102 5.18776 5.23909 5.34878 5.48548 5.55183 5.68535 6.07588 6.22285 6.35671 6.48746 6.72683 6.88264 7.34036 7.41952 8.91305 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.039095 B = 0.003503 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.040895 B = 7990.657747 C = 8200.621331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.060 3.940 3 N -0.535 5.535 4 C 0.205 3.795 5 C -0.522 4.522 6 H 0.052 0.948 7 C 0.007 3.993 8 N -0.930 5.930 9 Si 0.962 3.038 10 H -0.271 1.271 11 H -0.280 1.280 12 H -0.272 1.272 13 C 0.030 3.970 14 C 0.522 3.478 15 O -0.560 6.560 16 N -0.716 5.716 17 C 0.143 3.857 18 C -0.163 4.163 19 C 0.066 3.934 20 O -0.397 6.397 21 C 0.060 3.940 22 C -0.153 4.153 23 H 0.069 0.931 24 H 0.061 0.939 25 H 0.040 0.960 26 H 0.052 0.948 27 H 0.076 0.924 28 H -0.010 1.010 29 H 0.005 0.995 30 H 0.265 0.735 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.414 0.586 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.077 0.923 37 H 0.107 0.893 38 H 0.054 0.946 39 H 0.119 0.881 40 H 0.056 0.944 41 H 0.087 0.913 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.055 -1.352 22.233 22.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.068 4.068 3 N -0.259 5.259 4 C 0.079 3.921 5 C -0.561 4.561 6 H 0.070 0.930 7 C -0.191 4.191 8 N -0.571 5.571 9 Si 0.787 3.213 10 H -0.196 1.196 11 H -0.205 1.205 12 H -0.197 1.197 13 C -0.101 4.101 14 C 0.308 3.692 15 O -0.437 6.437 16 N -0.369 5.369 17 C 0.038 3.962 18 C -0.202 4.202 19 C -0.011 4.011 20 O -0.316 6.316 21 C -0.017 4.017 22 C -0.191 4.191 23 H 0.088 0.912 24 H 0.080 0.920 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.095 0.905 28 H 0.007 0.993 29 H 0.023 0.977 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.121 0.879 33 H 0.251 0.749 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.125 0.875 38 H 0.072 0.928 39 H 0.137 0.863 40 H 0.075 0.925 41 H 0.106 0.894 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.032 -1.824 22.160 22.235 hybrid contribution -0.793 0.097 -1.504 1.703 sum -0.826 -1.727 20.657 20.745 Atomic orbital electron populations 1.22280 0.97919 1.02327 1.01086 1.22015 0.92938 0.90248 1.01571 1.61917 1.60091 1.02598 1.01313 1.19471 0.93590 0.92615 0.86412 1.21381 1.21403 1.21780 0.91518 0.92957 1.25772 0.95963 0.95579 1.01800 1.70037 1.33155 1.30583 1.23325 0.85543 0.78860 0.78715 0.78144 1.19563 1.20520 1.19737 1.22050 0.99076 0.99557 0.89420 1.20737 0.80852 0.82725 0.84863 1.90624 1.37192 1.29546 1.86351 1.45928 1.49008 1.37007 1.04976 1.20980 0.92558 0.97771 0.84861 1.22557 0.97105 1.01801 0.98767 1.22576 0.93766 1.00045 0.84691 1.87919 1.25393 1.75476 1.42843 1.22731 0.83599 0.96948 0.98457 1.22451 0.99592 1.03878 0.93168 0.91196 0.92047 0.94078 0.92952 0.90533 0.99259 0.97698 0.92664 0.90644 0.87856 0.74925 0.91345 0.92456 0.90417 0.87519 0.92800 0.86307 0.92542 0.89409 0.88783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.42 9.26 71.98 0.67 -5.76 16 2 C 0.06 2.54 5.55 86.30 0.48 3.02 16 3 N -0.54 -24.01 4.43 -905.35 -4.01 -28.02 16 4 C 0.20 10.80 4.54 85.56 0.39 11.19 16 5 C -0.52 -30.26 8.40 25.60 0.21 -30.04 16 6 H 0.05 3.08 7.42 -2.91 -0.02 3.06 16 7 C 0.01 0.40 5.46 84.65 0.46 0.87 16 8 N -0.93 -55.45 13.29 21.45 0.28 -55.17 16 9 Si 0.96 45.14 29.54 68.60 2.03 47.17 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 12 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 13 C 0.03 1.03 5.23 85.56 0.45 1.48 16 14 C 0.52 16.49 7.52 87.66 0.66 17.15 16 15 O -0.56 -22.30 13.98 -3.01 -0.04 -22.34 16 16 N -0.72 -15.53 5.08 -441.98 -2.25 -17.77 16 17 C 0.14 2.84 2.54 45.11 0.11 2.95 16 18 C -0.16 -3.32 5.72 30.68 0.18 -3.14 16 19 C 0.07 1.16 6.84 72.01 0.49 1.65 16 20 O -0.40 -7.13 10.77 -148.98 -1.60 -8.73 16 21 C 0.06 0.76 6.84 72.01 0.49 1.26 16 22 C -0.15 -1.96 5.61 30.68 0.17 -1.79 16 23 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 24 H 0.06 1.92 6.35 -2.39 -0.02 1.91 16 25 H 0.04 1.71 6.26 -2.39 -0.01 1.70 16 26 H 0.05 2.45 7.01 -2.39 -0.02 2.44 16 27 H 0.08 3.16 5.86 -2.39 -0.01 3.14 16 28 H -0.01 -0.56 5.99 -2.39 -0.01 -0.58 16 29 H 0.00 0.28 7.90 -2.39 -0.02 0.26 16 30 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 31 H 0.08 2.29 6.06 -2.39 -0.01 2.27 16 32 H 0.10 3.32 7.91 -2.39 -0.02 3.30 16 33 H 0.41 6.38 8.61 -92.71 -0.80 5.58 16 34 H 0.07 1.66 7.58 -2.39 -0.02 1.64 16 35 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 39 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.06 0.69 8.14 -2.39 -0.02 0.68 16 41 H 0.09 0.99 8.14 -2.38 -0.02 0.98 16 42 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -70.80 330.44 -0.61 -71.41 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 0.21 Total: 14.64 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: 4.76 Total: -1.18 kcal Atomic # 7 Polarization: -94.99 SS G_CDS: -5.97 Total: -100.96 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -1.65 Total: -31.08 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -70.80 -0.61 -71.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062768922.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.015 kcal (2) G-P(sol) polarization free energy of solvation -70.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds