Wall clock time and date at job start Mon Mar 30 2020 00:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47390 * 2 1 4 4 C 1.46505 * 119.99698 * 270.00351 * 3 2 1 5 5 C 1.50700 * 109.46625 * 269.99076 * 4 3 2 6 6 H 1.07998 * 120.00196 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99825 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99815 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00273 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46884 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47349 * 119.99730 * 9 7 5 12 12 H 1.48496 * 109.47193 * 239.99936 * 9 7 5 13 13 C 1.34770 * 119.99865 * 89.99180 * 3 2 1 14 14 O 1.21278 * 120.00074 * 180.02562 * 13 3 2 15 15 C 1.50699 * 120.00205 * 0.02562 * 13 3 2 16 16 N 1.46903 * 109.47307 * 173.87720 * 15 13 3 17 17 C 1.46848 * 111.00123 * 169.42490 * 16 15 13 18 18 C 1.53033 * 109.52186 * 185.83896 * 17 16 15 19 19 C 1.53124 * 109.27956 * 300.82187 * 18 17 16 20 20 C 1.53110 * 109.15766 * 57.65586 * 19 18 17 21 21 H 1.09000 * 109.50879 * 62.29029 * 20 19 18 22 22 O 1.42902 * 109.50208 * 182.40286 * 20 19 18 23 23 C 1.46839 * 111.00008 * 293.63846 * 16 15 13 24 24 H 1.09001 * 109.46778 * 60.00156 * 1 2 3 25 25 H 1.08997 * 109.46726 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47336 * 300.00153 * 1 2 3 27 27 H 1.09003 * 109.47429 * 240.00253 * 2 1 3 28 28 H 1.09000 * 109.47471 * 120.00124 * 2 1 3 29 29 H 1.08997 * 109.47330 * 29.99138 * 4 3 2 30 30 H 1.08998 * 109.46858 * 149.99724 * 4 3 2 31 31 H 0.97000 * 120.00035 * 180.02562 * 8 7 5 32 32 H 1.09001 * 109.47612 * 53.87276 * 15 13 3 33 33 H 1.09005 * 109.47020 * 293.87305 * 15 13 3 34 34 H 1.09003 * 109.46484 * 305.85820 * 17 16 15 35 35 H 1.09002 * 109.45743 * 65.82752 * 17 16 15 36 36 H 1.08995 * 109.50946 * 60.76606 * 18 17 16 37 37 H 1.09004 * 109.50233 * 180.84539 * 18 17 16 38 38 H 1.09000 * 109.52158 * 177.56123 * 19 18 17 39 39 H 1.09002 * 109.52176 * 297.75124 * 19 18 17 40 40 H 0.96706 * 114.00176 * 299.80583 * 22 20 19 41 41 H 1.09007 * 109.46305 * 294.17696 * 23 16 15 42 42 H 1.09008 * 109.46347 * 54.14226 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8351 -1.7037 6 1 4.3427 1.2303 -1.0961 7 6 4.1495 2.3905 -2.8774 8 7 3.3497 3.1273 -3.6171 9 14 5.9134 2.0965 -3.4170 10 1 6.6004 1.2396 -2.4175 11 1 5.9206 1.4182 -4.7381 12 1 6.6215 3.3973 -3.5246 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1601 1.1672 15 6 1.9920 1.3061 2.4723 16 7 2.4470 2.1505 3.5849 17 6 1.9964 1.6104 4.8739 18 6 2.3614 2.5877 5.9936 19 6 3.8784 2.7958 6.0084 20 6 4.3281 3.3126 4.6391 21 1 3.8625 4.2787 4.4439 22 8 5.7498 3.4563 4.6268 23 6 3.9060 2.3144 3.5587 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.5818 1.6877 -2.0284 30 1 2.0955 3.1410 -1.1385 31 1 3.6757 3.5178 -4.4431 32 1 2.5395 0.3636 2.4840 33 1 0.9255 1.1081 2.5790 34 1 0.9155 1.4711 4.8515 35 1 2.4823 0.6518 5.0558 36 1 1.8649 3.5422 5.8198 37 1 2.0402 2.1795 6.9519 38 1 4.1386 3.5243 6.7762 39 1 4.3740 1.8484 6.2209 40 1 6.0883 4.0757 5.2878 41 1 4.3830 1.3524 3.7467 42 1 4.2122 2.6864 2.5809 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079807798.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:50 Heat of formation + Delta-G solvation = -83.377569 kcal Electronic energy + Delta-G solvation = -21859.480300 eV Core-core repulsion = 18646.423708 eV Total energy + Delta-G solvation = -3213.056592 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.72093 -38.41325 -36.13226 -35.16487 -33.03457 -32.59032 -30.05692 -29.73670 -28.25489 -26.30167 -23.58473 -22.95872 -22.74689 -21.98698 -19.84571 -18.29142 -17.23085 -16.57749 -16.33821 -15.90563 -15.23238 -15.17215 -14.50895 -14.28659 -14.22844 -13.97051 -13.37731 -13.16577 -13.13630 -12.82978 -12.67001 -12.25860 -11.92606 -11.91641 -11.59369 -11.26870 -11.15033 -11.09035 -10.92490 -10.84963 -10.67185 -10.51223 -10.42042 -10.08158 -9.76677 -9.56194 -8.83696 -8.39827 -8.13819 -7.59270 -6.00523 -4.04888 3.32624 3.40099 3.43156 3.51051 3.55120 4.05162 4.46969 4.57610 4.68858 4.80715 4.90703 5.11802 5.23258 5.27560 5.33591 5.36269 5.41710 5.48005 5.54486 5.64522 5.66017 5.67941 5.76648 5.83898 5.89140 5.96588 6.05272 6.21537 6.25618 6.34486 6.50156 6.97245 7.14570 7.20854 7.50682 7.61500 7.69725 7.96730 8.28271 8.49416 8.95713 9.19213 9.60423 11.07517 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.017800 B = 0.005564 C = 0.004514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.657358 B = 5031.155150 C = 6200.794573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.600 5.600 4 C 0.247 3.753 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.505 3.495 14 O -0.522 6.522 15 C 0.040 3.960 16 N -0.517 5.517 17 C 0.053 3.947 18 C -0.113 4.113 19 C -0.153 4.153 20 C 0.110 3.890 21 H 0.067 0.933 22 O -0.566 6.566 23 C 0.061 3.939 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.082 0.918 28 H 0.062 0.938 29 H 0.031 0.969 30 H 0.043 0.957 31 H 0.262 0.738 32 H 0.056 0.944 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.032 0.968 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.376 0.624 41 H 0.032 0.968 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.053 -5.624 17.755 19.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.333 5.333 4 C 0.128 3.872 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.290 3.710 14 O -0.398 6.398 15 C -0.091 4.091 16 N -0.243 5.243 17 C -0.075 4.075 18 C -0.151 4.151 19 C -0.191 4.191 20 C 0.051 3.949 21 H 0.085 0.915 22 O -0.371 6.371 23 C -0.067 4.067 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.100 0.900 28 H 0.080 0.920 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.117 0.883 34 H 0.095 0.905 35 H 0.050 0.950 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.222 0.778 41 H 0.050 0.950 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.096 -4.871 17.018 18.169 hybrid contribution 1.284 -0.673 0.156 1.458 sum -2.812 -5.544 17.173 18.264 Atomic orbital electron populations 1.22219 0.96819 1.01311 1.02357 1.21411 0.93492 0.84398 1.02542 1.48270 1.64171 1.13147 1.07707 1.19249 0.96162 0.93675 0.78095 1.21475 0.96953 1.31670 1.06170 0.92526 1.24928 0.97779 0.94949 0.96434 1.69946 1.35573 1.33553 1.14356 0.86463 0.84766 0.78077 0.78247 1.19830 1.21020 1.20860 1.20110 0.78999 0.87155 0.84694 1.90661 1.44643 1.17663 1.86789 1.22062 1.01755 0.94579 0.90720 1.61369 1.12221 1.49229 1.01474 1.22155 1.00430 0.95863 0.89078 1.21500 0.95406 1.00570 0.97581 1.22349 0.96846 1.01891 0.98023 1.21705 0.80571 0.99053 0.93567 0.91503 1.86506 1.21333 1.67936 1.61308 1.21980 0.86376 0.97229 1.01097 0.91999 0.92260 0.93092 0.89996 0.91982 0.95102 0.93876 0.92828 0.92577 0.88323 0.90474 0.94954 0.90740 0.91277 0.91760 0.91609 0.77772 0.94964 0.87834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 10.24 37.16 0.38 -1.86 16 2 C 0.11 1.70 5.96 -4.04 -0.02 1.67 16 3 N -0.60 -12.77 2.46 -175.06 -0.43 -13.20 16 4 C 0.25 6.54 5.16 -5.19 -0.03 6.51 16 5 C -0.52 -15.06 9.39 -34.44 -0.32 -15.38 16 6 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.90 -26.94 13.29 55.43 0.74 -26.21 16 9 Si 0.90 22.28 29.54 -169.99 -5.02 17.26 16 10 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 13 C 0.50 10.67 7.21 -10.99 -0.08 10.59 16 14 O -0.52 -13.37 14.28 5.56 0.08 -13.29 16 15 C 0.04 0.62 4.18 -4.98 -0.02 0.60 16 16 N -0.52 -7.94 4.35 -236.11 -1.03 -8.97 16 17 C 0.05 0.60 5.46 -3.84 -0.02 0.58 16 18 C -0.11 -1.12 6.09 -26.65 -0.16 -1.28 16 19 C -0.15 -1.61 5.63 -26.61 -0.15 -1.76 16 20 C 0.11 1.54 3.63 -26.66 -0.10 1.45 16 21 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 22 O -0.57 -7.94 13.32 -35.23 -0.47 -8.41 16 23 C 0.06 1.02 4.77 -3.84 -0.02 1.00 16 24 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.64 7.41 -51.93 -0.38 0.25 16 27 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 28 H 0.06 0.83 6.27 -51.93 -0.33 0.51 16 29 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 30 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.06 0.80 7.05 -51.93 -0.37 0.43 16 33 H 0.10 1.29 7.25 -51.93 -0.38 0.91 16 34 H 0.08 0.76 8.01 -51.93 -0.42 0.35 16 35 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.38 3.33 9.09 45.56 0.41 3.74 16 41 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.10 2.19 6.05 -51.92 -0.31 1.87 16 LS Contribution 335.80 15.07 5.06 5.06 Total: -1.00 -34.51 335.80 -8.05 -42.57 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -6.34 Total: 1.41 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -0.64 Total: 3.78 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: -0.72 Total: -48.38 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.39 Total: -21.70 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.51 -8.05 -42.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079807798.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.813 kcal (2) G-P(sol) polarization free energy of solvation -34.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds