Wall clock time and date at job start Mon Mar 30 2020 00:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47390 * 2 1 4 4 C 1.46505 * 119.99698 * 270.00351 * 3 2 1 5 5 C 1.50700 * 109.46625 * 269.99076 * 4 3 2 6 6 H 1.07998 * 120.00196 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99825 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99815 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00273 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46884 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47349 * 119.99730 * 9 7 5 12 12 H 1.48496 * 109.47193 * 239.99936 * 9 7 5 13 13 C 1.34770 * 119.99865 * 89.99180 * 3 2 1 14 14 O 1.21278 * 120.00074 * 180.02562 * 13 3 2 15 15 C 1.50699 * 120.00205 * 0.02562 * 13 3 2 16 16 N 1.46903 * 109.47307 * 173.87720 * 15 13 3 17 17 C 1.46848 * 111.00123 * 169.42490 * 16 15 13 18 18 C 1.53033 * 109.52186 * 185.83896 * 17 16 15 19 19 C 1.53124 * 109.27956 * 300.82187 * 18 17 16 20 20 C 1.53110 * 109.15766 * 57.65586 * 19 18 17 21 21 H 1.09000 * 109.50879 * 62.29029 * 20 19 18 22 22 O 1.42902 * 109.50208 * 182.40286 * 20 19 18 23 23 C 1.46839 * 111.00008 * 293.63846 * 16 15 13 24 24 H 1.09001 * 109.46778 * 60.00156 * 1 2 3 25 25 H 1.08997 * 109.46726 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47336 * 300.00153 * 1 2 3 27 27 H 1.09003 * 109.47429 * 240.00253 * 2 1 3 28 28 H 1.09000 * 109.47471 * 120.00124 * 2 1 3 29 29 H 1.08997 * 109.47330 * 29.99138 * 4 3 2 30 30 H 1.08998 * 109.46858 * 149.99724 * 4 3 2 31 31 H 0.97000 * 120.00035 * 180.02562 * 8 7 5 32 32 H 1.09001 * 109.47612 * 53.87276 * 15 13 3 33 33 H 1.09005 * 109.47020 * 293.87305 * 15 13 3 34 34 H 1.09003 * 109.46484 * 305.85820 * 17 16 15 35 35 H 1.09002 * 109.45743 * 65.82752 * 17 16 15 36 36 H 1.08995 * 109.50946 * 60.76606 * 18 17 16 37 37 H 1.09004 * 109.50233 * 180.84539 * 18 17 16 38 38 H 1.09000 * 109.52158 * 177.56123 * 19 18 17 39 39 H 1.09002 * 109.52176 * 297.75124 * 19 18 17 40 40 H 0.96706 * 114.00176 * 299.80583 * 22 20 19 41 41 H 1.09007 * 109.46305 * 294.17696 * 23 16 15 42 42 H 1.09008 * 109.46347 * 54.14226 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8351 -1.7037 6 1 4.3427 1.2303 -1.0961 7 6 4.1495 2.3905 -2.8774 8 7 3.3497 3.1273 -3.6171 9 14 5.9134 2.0965 -3.4170 10 1 6.6004 1.2396 -2.4175 11 1 5.9206 1.4182 -4.7381 12 1 6.6215 3.3973 -3.5246 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1601 1.1672 15 6 1.9920 1.3061 2.4723 16 7 2.4470 2.1505 3.5849 17 6 1.9964 1.6104 4.8739 18 6 2.3614 2.5877 5.9936 19 6 3.8784 2.7958 6.0084 20 6 4.3281 3.3126 4.6391 21 1 3.8625 4.2787 4.4439 22 8 5.7498 3.4563 4.6268 23 6 3.9060 2.3144 3.5587 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.5818 1.6877 -2.0284 30 1 2.0955 3.1410 -1.1385 31 1 3.6757 3.5178 -4.4431 32 1 2.5395 0.3636 2.4840 33 1 0.9255 1.1081 2.5790 34 1 0.9155 1.4711 4.8515 35 1 2.4823 0.6518 5.0558 36 1 1.8649 3.5422 5.8198 37 1 2.0402 2.1795 6.9519 38 1 4.1386 3.5243 6.7762 39 1 4.3740 1.8484 6.2209 40 1 6.0883 4.0757 5.2878 41 1 4.3830 1.3524 3.7467 42 1 4.2122 2.6864 2.5809 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079807798.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:50 Heat of formation + Delta-G solvation = -110.760940 kcal Electronic energy + Delta-G solvation = -21860.667732 eV Core-core repulsion = 18646.423708 eV Total energy + Delta-G solvation = -3214.244024 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.09742 -39.74049 -37.29921 -36.80506 -34.94653 -33.86214 -31.60429 -30.81696 -29.81473 -27.96705 -25.17395 -24.33969 -23.78281 -23.46138 -20.83272 -19.88195 -18.63589 -18.34741 -17.95908 -17.30083 -16.80808 -16.41234 -16.11805 -15.63535 -15.49367 -15.10481 -14.69866 -14.58004 -14.36214 -14.12539 -13.98841 -13.69179 -13.33417 -13.21696 -13.14101 -12.96941 -12.68670 -12.57037 -12.48489 -12.16197 -11.96004 -11.83818 -11.75299 -11.68994 -11.47586 -10.82144 -10.66088 -10.47022 -9.40606 -9.30682 -8.23597 -6.38331 1.33261 1.36350 1.47809 1.87713 2.21362 2.38573 2.73821 3.05496 3.52954 3.74477 3.80518 3.82661 4.06164 4.07744 4.18821 4.22818 4.35374 4.42156 4.48456 4.60877 4.64771 4.71232 4.74551 4.92079 4.96241 4.97401 5.00905 5.05585 5.06443 5.15002 5.22346 5.40004 5.40736 5.57920 5.84452 5.91675 6.06588 6.12893 6.70169 6.84391 6.86403 7.28254 7.55440 8.83481 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.017800 B = 0.005564 C = 0.004514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.657358 B = 5031.155150 C = 6200.794573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.099 3.901 3 N -0.606 5.606 4 C 0.264 3.736 5 C -0.541 4.541 6 H 0.049 0.951 7 C 0.008 3.992 8 N -0.928 5.928 9 Si 0.966 3.034 10 H -0.270 1.270 11 H -0.266 1.266 12 H -0.282 1.282 13 C 0.493 3.507 14 O -0.580 6.580 15 C 0.054 3.946 16 N -0.535 5.535 17 C 0.050 3.950 18 C -0.111 4.111 19 C -0.142 4.142 20 C 0.110 3.890 21 H 0.048 0.952 22 O -0.588 6.588 23 C 0.065 3.935 24 H 0.037 0.963 25 H 0.096 0.904 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.098 0.902 29 H 0.022 0.978 30 H -0.006 1.006 31 H 0.267 0.733 32 H 0.078 0.922 33 H 0.134 0.866 34 H 0.098 0.902 35 H 0.046 0.954 36 H 0.065 0.935 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.396 0.604 41 H 0.034 0.966 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.333 -7.846 20.232 22.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.339 5.339 4 C 0.143 3.857 5 C -0.579 4.579 6 H 0.067 0.933 7 C -0.191 4.191 8 N -0.568 5.568 9 Si 0.790 3.210 10 H -0.194 1.194 11 H -0.191 1.191 12 H -0.208 1.208 13 C 0.281 3.719 14 O -0.460 6.460 15 C -0.077 4.077 16 N -0.262 5.262 17 C -0.077 4.077 18 C -0.149 4.149 19 C -0.179 4.179 20 C 0.051 3.949 21 H 0.066 0.934 22 O -0.396 6.396 23 C -0.064 4.064 24 H 0.056 0.944 25 H 0.115 0.885 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.116 0.884 29 H 0.040 0.960 30 H 0.012 0.988 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.152 0.848 34 H 0.117 0.883 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.120 0.880 38 H 0.106 0.894 39 H 0.088 0.912 40 H 0.246 0.754 41 H 0.052 0.948 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.401 -7.136 19.529 21.252 hybrid contribution 1.355 0.048 -0.614 1.489 sum -3.046 -7.087 18.915 20.427 Atomic orbital electron populations 1.22144 0.94304 1.03534 1.01777 1.21756 0.95525 0.81338 1.03730 1.48310 1.64291 1.15101 1.06162 1.18657 0.95120 0.91451 0.80513 1.21720 0.97933 1.31825 1.06443 0.93281 1.25839 1.02307 0.94480 0.96451 1.70059 1.37653 1.34231 1.14841 0.85395 0.79118 0.78017 0.78442 1.19411 1.19085 1.20758 1.21237 0.77468 0.86775 0.86383 1.90630 1.47067 1.20514 1.87780 1.22008 1.04059 0.94175 0.87422 1.61341 1.11122 1.50382 1.03320 1.22348 1.01733 0.96605 0.87005 1.21552 0.94622 1.00103 0.98576 1.22256 0.97404 1.02494 0.95792 1.21653 0.80524 0.97610 0.95097 0.93367 1.86452 1.21516 1.68869 1.62780 1.21806 0.87727 0.97712 0.99120 0.94410 0.88525 0.91876 0.91177 0.88400 0.96004 0.98767 0.92400 0.90452 0.84843 0.88343 0.93592 0.91588 0.87979 0.89400 0.91183 0.75351 0.94789 0.93513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.89 10.24 71.98 0.74 -3.15 16 2 C 0.10 3.04 5.96 86.38 0.51 3.56 16 3 N -0.61 -26.52 2.46 -826.15 -2.03 -28.55 16 4 C 0.26 14.79 5.16 85.63 0.44 15.23 16 5 C -0.54 -32.37 9.39 25.60 0.24 -32.13 16 6 H 0.05 2.94 7.81 -2.91 -0.02 2.91 16 7 C 0.01 0.48 5.46 84.65 0.46 0.94 16 8 N -0.93 -57.70 13.29 21.45 0.28 -57.41 16 9 Si 0.97 46.56 29.54 68.60 2.03 48.59 16 10 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 12 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 13 C 0.49 21.41 7.21 87.66 0.63 22.04 16 14 O -0.58 -31.73 14.28 -3.02 -0.04 -31.77 16 15 C 0.05 1.58 4.18 85.56 0.36 1.93 16 16 N -0.54 -15.81 4.35 -900.92 -3.92 -19.72 16 17 C 0.05 0.95 5.46 86.32 0.47 1.42 16 18 C -0.11 -1.80 6.09 30.65 0.19 -1.62 16 19 C -0.14 -2.60 5.63 30.67 0.17 -2.42 16 20 C 0.11 3.07 3.63 30.64 0.11 3.19 16 21 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 22 O -0.59 -16.49 13.32 -148.98 -1.98 -18.47 16 23 C 0.06 2.19 4.77 86.33 0.41 2.61 16 24 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.06 1.39 7.41 -2.39 -0.02 1.37 16 27 H 0.07 2.32 8.07 -2.39 -0.02 2.30 16 28 H 0.10 2.32 6.27 -2.39 -0.01 2.30 16 29 H 0.02 1.24 8.07 -2.39 -0.02 1.22 16 30 H -0.01 -0.38 7.42 -2.39 -0.02 -0.39 16 31 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 32 H 0.08 1.96 7.05 -2.39 -0.02 1.94 16 33 H 0.13 2.98 7.25 -2.38 -0.02 2.96 16 34 H 0.10 1.49 8.01 -2.39 -0.02 1.47 16 35 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 38 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.40 6.75 9.09 -74.05 -0.67 6.07 16 41 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 42 H 0.05 2.11 6.05 -2.38 -0.01 2.10 16 Total: -1.00 -81.52 335.80 -0.60 -82.12 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 0.32 Total: 13.61 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: 4.74 Total: 11.60 kcal Atomic # 7 Polarization: -100.03 SS G_CDS: -5.66 Total: -105.69 kcal Atomic # 8 Polarization: -48.22 SS G_CDS: -2.03 Total: -50.25 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -81.52 -0.60 -82.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079807798.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.637 kcal (2) G-P(sol) polarization free energy of solvation -81.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds