Wall clock time and date at job start Mon Mar 30 2020 00:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 109.46965 * 2 1 4 4 C 1.46495 * 120.00130 * 90.00260 * 3 2 1 5 5 C 1.50698 * 109.47550 * 89.99540 * 4 3 2 6 6 H 1.07999 * 120.00131 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00390 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00151 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 119.99728 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.47229 * 90.00331 * 9 7 5 11 11 H 1.48497 * 109.47063 * 209.99994 * 9 7 5 12 12 H 1.48499 * 109.47034 * 330.00041 * 9 7 5 13 13 C 1.34779 * 119.99884 * 269.99334 * 3 2 1 14 14 O 1.21284 * 119.99951 * 180.02562 * 13 3 2 15 15 C 1.50694 * 120.00208 * 0.02562 * 13 3 2 16 16 N 1.46896 * 109.47527 * 173.74550 * 15 13 3 17 17 C 1.46847 * 111.00327 * 169.40463 * 16 15 13 18 18 C 1.53039 * 109.52144 * 185.84111 * 17 16 15 19 19 C 1.53112 * 109.28098 * 300.81810 * 18 17 16 20 20 O 1.42901 * 109.57785 * 177.59384 * 19 18 17 21 21 C 1.53117 * 109.16182 * 57.65453 * 19 18 17 22 22 C 1.46852 * 110.99994 * 293.61539 * 16 15 13 23 23 H 1.08998 * 109.47562 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47363 * 300.00368 * 1 2 3 25 25 H 1.09007 * 109.46745 * 60.00513 * 1 2 3 26 26 H 1.09000 * 109.46724 * 239.99390 * 2 1 3 27 27 H 1.08998 * 109.46697 * 120.00331 * 2 1 3 28 28 H 1.09000 * 109.47560 * 209.99688 * 4 3 2 29 29 H 1.09002 * 109.47315 * 329.99586 * 4 3 2 30 30 H 0.97001 * 119.99703 * 179.97438 * 8 7 5 31 31 H 1.08998 * 109.47428 * 293.74826 * 15 13 3 32 32 H 1.09003 * 109.47076 * 53.74376 * 15 13 3 33 33 H 1.09000 * 109.45958 * 305.85739 * 17 16 15 34 34 H 1.09001 * 109.46219 * 65.82297 * 17 16 15 35 35 H 1.08999 * 109.49784 * 180.87485 * 18 17 16 36 36 H 1.09000 * 109.50054 * 60.76166 * 18 17 16 37 37 H 1.09004 * 109.51956 * 297.75405 * 19 18 17 38 38 H 0.96704 * 113.99559 * 60.28256 * 20 19 18 39 39 H 1.08998 * 109.50798 * 182.40542 * 21 19 18 40 40 H 1.09005 * 109.50372 * 62.28783 * 21 19 18 41 41 H 1.08998 * 109.46100 * 294.17598 * 22 16 15 42 42 H 1.08996 * 109.46187 * 54.15260 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 1.2687 5 6 3.6857 1.8350 1.7038 6 1 4.3426 1.2302 1.0963 7 6 4.1491 2.3896 2.8780 8 7 5.3913 2.1833 3.2574 9 14 3.0127 3.4352 3.9292 10 1 2.3070 2.5691 4.9074 11 1 3.8102 4.4552 4.6563 12 1 2.0177 4.1125 3.0595 13 6 2.2430 2.0165 -1.1672 14 8 2.6477 3.1598 -1.1672 15 6 1.9915 1.3062 -2.4723 16 7 2.1653 2.2497 -3.5847 17 6 2.1767 1.5469 -4.8740 18 6 2.5039 2.5376 -5.9937 19 6 1.4524 3.6505 -6.0072 20 8 1.7829 4.6092 -7.0140 21 6 1.4270 4.3347 -4.6377 22 6 1.1311 3.2919 -3.5573 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 2.0956 3.1410 1.1384 29 1 1.5817 1.6877 2.0284 30 1 5.7173 2.5739 4.0833 31 1 2.6980 0.4833 -2.5802 32 1 0.9740 0.9153 -2.4830 33 1 2.9316 0.7609 -4.8524 34 1 1.1971 1.1045 -5.0552 35 1 2.4970 2.0186 -6.9522 36 1 3.4893 2.9700 -5.8204 37 1 0.4723 3.2229 -6.2190 38 1 1.8170 4.2441 -7.9088 39 1 0.6507 5.0997 -4.6274 40 1 2.3955 4.7955 -4.4431 41 1 0.1564 2.8414 -3.7446 42 1 1.1266 3.7735 -2.5795 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079845989.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:43 Heat of formation + Delta-G solvation = -79.462472 kcal Electronic energy + Delta-G solvation = -21722.299446 eV Core-core repulsion = 18509.412625 eV Total energy + Delta-G solvation = -3212.886821 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.81139 -38.57905 -36.37731 -35.26775 -32.78651 -32.07884 -30.94458 -30.32656 -28.37284 -26.36052 -23.42997 -23.05340 -22.97264 -21.75933 -19.90949 -18.31395 -17.47235 -16.89286 -16.59941 -16.09668 -15.26714 -15.21865 -14.60137 -14.48501 -14.28891 -13.70956 -13.61036 -13.48932 -13.13139 -12.86746 -12.55106 -12.24297 -12.16811 -11.84033 -11.65302 -11.57498 -11.43886 -11.25613 -11.18464 -10.94978 -10.73715 -10.48328 -10.39286 -10.06440 -9.96059 -9.50646 -8.96059 -8.56732 -8.20358 -7.67699 -6.05995 -4.04376 3.28190 3.36359 3.38384 3.41163 3.55384 4.04393 4.12421 4.42027 4.64045 4.70863 4.93938 4.97630 5.15477 5.20588 5.23631 5.28134 5.30446 5.41027 5.47211 5.51829 5.58779 5.67858 5.70452 5.73268 5.86583 5.94788 6.07939 6.09909 6.13766 6.32987 6.36887 6.67544 6.95008 7.05348 7.13428 7.39452 7.48058 7.64436 8.29515 8.50290 8.97026 9.05647 9.54565 11.07548 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.024504 B = 0.004561 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.375520 B = 6137.832860 C = 6599.048810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.596 5.596 4 C 0.218 3.782 5 C -0.527 4.527 6 H 0.074 0.926 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.874 3.126 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.264 1.264 13 C 0.508 3.492 14 O -0.520 6.520 15 C 0.039 3.961 16 N -0.520 5.520 17 C 0.060 3.940 18 C -0.147 4.147 19 C 0.103 3.897 20 O -0.567 6.567 21 C -0.107 4.107 22 C 0.058 3.942 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.049 0.951 26 H 0.066 0.934 27 H 0.085 0.915 28 H 0.040 0.960 29 H 0.024 0.976 30 H 0.264 0.736 31 H 0.100 0.900 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.031 0.969 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.049 0.951 38 H 0.374 0.626 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.026 0.974 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.042 -4.424 -16.912 21.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.329 5.329 4 C 0.098 3.902 5 C -0.566 4.566 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.701 3.299 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.189 1.189 13 C 0.294 3.706 14 O -0.395 6.395 15 C -0.092 4.092 16 N -0.245 5.245 17 C -0.068 4.068 18 C -0.186 4.186 19 C 0.045 3.955 20 O -0.372 6.372 21 C -0.145 4.145 22 C -0.070 4.070 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.084 0.916 27 H 0.103 0.897 28 H 0.058 0.942 29 H 0.042 0.958 30 H 0.074 0.926 31 H 0.118 0.882 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.049 0.951 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.067 0.933 38 H 0.220 0.780 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.044 0.956 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.214 -3.127 -16.164 19.920 hybrid contribution -1.191 -0.512 0.137 1.304 sum -12.406 -3.639 -16.027 20.592 Atomic orbital electron populations 1.22238 0.96917 1.01511 1.02112 1.21421 0.93254 0.84063 1.03050 1.47952 1.64570 1.13332 1.07017 1.19615 0.97054 0.93577 0.80004 1.21341 0.95434 1.32757 1.07035 0.90776 1.24856 0.95003 0.95768 0.97384 1.69898 1.15178 1.45066 1.23514 0.86870 0.81317 0.80908 0.80776 1.20171 1.20955 1.18875 1.20151 0.78658 0.87157 0.84664 1.90664 1.44199 1.17895 1.86766 1.22043 1.01154 0.95373 0.90634 1.61506 1.48942 1.12819 1.01218 1.22024 1.00064 0.95969 0.88776 1.22301 1.01416 0.96996 0.97843 1.21907 0.95827 0.88821 0.88993 1.86555 1.93527 1.38337 1.18750 1.21505 1.03942 0.97794 0.91239 1.22159 0.91020 0.92785 1.01015 0.92014 0.92181 0.93206 0.91588 0.89690 0.94220 0.95841 0.92602 0.88211 0.92634 0.90290 0.95054 0.91475 0.89876 0.93329 0.77968 0.91068 0.89855 0.95582 0.88336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.06 10.18 37.16 0.38 -1.68 16 2 C 0.11 1.61 5.84 -4.04 -0.02 1.58 16 3 N -0.60 -12.06 2.46 -175.07 -0.43 -12.49 16 4 C 0.22 5.32 4.23 -5.20 -0.02 5.30 16 5 C -0.53 -15.23 9.94 -34.44 -0.34 -15.58 16 6 H 0.07 2.35 8.06 -52.49 -0.42 1.93 16 7 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 8 N -0.90 -27.94 13.96 55.43 0.77 -27.17 16 9 Si 0.87 21.70 27.47 -169.99 -4.67 17.03 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 12 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 13 C 0.51 10.27 7.20 -10.99 -0.08 10.19 16 14 O -0.52 -12.80 14.29 5.55 0.08 -12.72 16 15 C 0.04 0.57 3.91 -4.98 -0.02 0.56 16 16 N -0.52 -7.62 4.35 -236.12 -1.03 -8.64 16 17 C 0.06 0.65 5.46 -3.83 -0.02 0.63 16 18 C -0.15 -1.49 5.72 -26.65 -0.15 -1.65 16 19 C 0.10 1.12 3.54 -26.61 -0.09 1.02 16 20 O -0.57 -6.11 13.33 -35.23 -0.47 -6.58 16 21 C -0.11 -1.41 5.75 -26.65 -0.15 -1.56 16 22 C 0.06 0.82 5.12 -3.83 -0.02 0.80 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.05 0.58 7.12 -51.93 -0.37 0.21 16 26 H 0.07 0.83 6.61 -51.93 -0.34 0.49 16 27 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 28 H 0.04 1.05 6.48 -51.93 -0.34 0.72 16 29 H 0.02 0.54 7.50 -51.93 -0.39 0.15 16 30 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 31 H 0.10 1.34 7.55 -51.93 -0.39 0.95 16 32 H 0.06 0.69 6.83 -51.93 -0.35 0.33 16 33 H 0.08 0.80 8.01 -51.93 -0.42 0.39 16 34 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.37 2.27 9.09 45.56 0.41 2.68 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.10 1.69 6.06 -51.93 -0.31 1.38 16 LS Contribution 331.92 15.07 5.00 5.00 Total: -1.00 -35.22 331.92 -7.70 -42.93 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -6.32 Total: 1.01 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -0.65 Total: 1.64 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: -0.68 Total: -48.30 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.39 Total: -19.30 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -35.22 -7.70 -42.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079845989.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.537 kcal (2) G-P(sol) polarization free energy of solvation -35.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds