Wall clock time and date at job start Mon Mar 30 2020 00:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 109.46965 * 2 1 4 4 C 1.46495 * 120.00130 * 90.00260 * 3 2 1 5 5 C 1.50698 * 109.47550 * 89.99540 * 4 3 2 6 6 H 1.07999 * 120.00131 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00390 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00151 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 119.99728 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.47229 * 90.00331 * 9 7 5 11 11 H 1.48497 * 109.47063 * 209.99994 * 9 7 5 12 12 H 1.48499 * 109.47034 * 330.00041 * 9 7 5 13 13 C 1.34779 * 119.99884 * 269.99334 * 3 2 1 14 14 O 1.21284 * 119.99951 * 180.02562 * 13 3 2 15 15 C 1.50694 * 120.00208 * 0.02562 * 13 3 2 16 16 N 1.46896 * 109.47527 * 173.74550 * 15 13 3 17 17 C 1.46847 * 111.00327 * 169.40463 * 16 15 13 18 18 C 1.53039 * 109.52144 * 185.84111 * 17 16 15 19 19 C 1.53112 * 109.28098 * 300.81810 * 18 17 16 20 20 O 1.42901 * 109.57785 * 177.59384 * 19 18 17 21 21 C 1.53117 * 109.16182 * 57.65453 * 19 18 17 22 22 C 1.46852 * 110.99994 * 293.61539 * 16 15 13 23 23 H 1.08998 * 109.47562 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47363 * 300.00368 * 1 2 3 25 25 H 1.09007 * 109.46745 * 60.00513 * 1 2 3 26 26 H 1.09000 * 109.46724 * 239.99390 * 2 1 3 27 27 H 1.08998 * 109.46697 * 120.00331 * 2 1 3 28 28 H 1.09000 * 109.47560 * 209.99688 * 4 3 2 29 29 H 1.09002 * 109.47315 * 329.99586 * 4 3 2 30 30 H 0.97001 * 119.99703 * 179.97438 * 8 7 5 31 31 H 1.08998 * 109.47428 * 293.74826 * 15 13 3 32 32 H 1.09003 * 109.47076 * 53.74376 * 15 13 3 33 33 H 1.09000 * 109.45958 * 305.85739 * 17 16 15 34 34 H 1.09001 * 109.46219 * 65.82297 * 17 16 15 35 35 H 1.08999 * 109.49784 * 180.87485 * 18 17 16 36 36 H 1.09000 * 109.50054 * 60.76166 * 18 17 16 37 37 H 1.09004 * 109.51956 * 297.75405 * 19 18 17 38 38 H 0.96704 * 113.99559 * 60.28256 * 20 19 18 39 39 H 1.08998 * 109.50798 * 182.40542 * 21 19 18 40 40 H 1.09005 * 109.50372 * 62.28783 * 21 19 18 41 41 H 1.08998 * 109.46100 * 294.17598 * 22 16 15 42 42 H 1.08996 * 109.46187 * 54.15260 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 1.2687 5 6 3.6857 1.8350 1.7038 6 1 4.3426 1.2302 1.0963 7 6 4.1491 2.3896 2.8780 8 7 5.3913 2.1833 3.2574 9 14 3.0127 3.4352 3.9292 10 1 2.3070 2.5691 4.9074 11 1 3.8102 4.4552 4.6563 12 1 2.0177 4.1125 3.0595 13 6 2.2430 2.0165 -1.1672 14 8 2.6477 3.1598 -1.1672 15 6 1.9915 1.3062 -2.4723 16 7 2.1653 2.2497 -3.5847 17 6 2.1767 1.5469 -4.8740 18 6 2.5039 2.5376 -5.9937 19 6 1.4524 3.6505 -6.0072 20 8 1.7829 4.6092 -7.0140 21 6 1.4270 4.3347 -4.6377 22 6 1.1311 3.2919 -3.5573 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 2.0956 3.1410 1.1384 29 1 1.5817 1.6877 2.0284 30 1 5.7173 2.5739 4.0833 31 1 2.6980 0.4833 -2.5802 32 1 0.9740 0.9153 -2.4830 33 1 2.9316 0.7609 -4.8524 34 1 1.1971 1.1045 -5.0552 35 1 2.4970 2.0186 -6.9522 36 1 3.4893 2.9700 -5.8204 37 1 0.4723 3.2229 -6.2190 38 1 1.8170 4.2441 -7.9088 39 1 0.6507 5.0997 -4.6274 40 1 2.3955 4.7955 -4.4431 41 1 0.1564 2.8414 -3.7446 42 1 1.1266 3.7735 -2.5795 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079845989.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:42 Heat of formation + Delta-G solvation = -108.124765 kcal Electronic energy + Delta-G solvation = -21723.542336 eV Core-core repulsion = 18509.412625 eV Total energy + Delta-G solvation = -3214.129711 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.10564 -39.75644 -37.38583 -36.79372 -34.87067 -33.20965 -31.93006 -31.75621 -29.96365 -27.79654 -24.67548 -24.34989 -24.06243 -23.23549 -20.82995 -19.83676 -19.09807 -18.32192 -17.95364 -17.39166 -16.64633 -16.52539 -16.04524 -15.66894 -15.47308 -15.09183 -14.74437 -14.57892 -14.53213 -14.28895 -13.89414 -13.70896 -13.46854 -13.21733 -13.09251 -12.67060 -12.64212 -12.53708 -12.35165 -12.20326 -12.17606 -12.03604 -11.82609 -11.75309 -11.30683 -10.82270 -10.75699 -10.53953 -9.40274 -9.19670 -8.34126 -6.38714 1.30129 1.35386 1.45937 1.85383 2.21829 2.30853 2.94530 3.00367 3.29131 3.65937 3.81518 3.87066 4.11201 4.11300 4.22538 4.25913 4.31619 4.42949 4.45130 4.54270 4.61037 4.63645 4.78753 4.81469 4.88991 4.93977 4.94963 5.00216 5.02274 5.06163 5.16311 5.35216 5.38935 5.47969 5.68242 5.96299 6.17451 6.26099 6.62771 6.77499 6.93285 7.22704 7.50906 8.83096 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.024504 B = 0.004561 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.375520 B = 6137.832860 C = 6599.048810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.098 3.902 3 N -0.604 5.604 4 C 0.228 3.772 5 C -0.535 4.535 6 H 0.028 0.972 7 C 0.011 3.989 8 N -0.946 5.946 9 Si 0.948 3.052 10 H -0.249 1.249 11 H -0.282 1.282 12 H -0.258 1.258 13 C 0.496 3.504 14 O -0.578 6.578 15 C 0.053 3.947 16 N -0.551 5.551 17 C 0.059 3.941 18 C -0.143 4.143 19 C 0.109 3.891 20 O -0.586 6.586 21 C -0.108 4.108 22 C 0.064 3.936 23 H 0.095 0.905 24 H 0.045 0.955 25 H 0.059 0.941 26 H 0.096 0.904 27 H 0.071 0.929 28 H 0.016 0.984 29 H 0.045 0.955 30 H 0.268 0.732 31 H 0.117 0.883 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.059 0.941 35 H 0.102 0.898 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.395 0.605 39 H 0.074 0.926 40 H 0.046 0.954 41 H 0.052 0.948 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.925 -6.038 -18.452 24.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.024 4.024 3 N -0.336 5.336 4 C 0.106 3.894 5 C -0.573 4.573 6 H 0.046 0.954 7 C -0.187 4.187 8 N -0.586 5.586 9 Si 0.770 3.230 10 H -0.173 1.173 11 H -0.208 1.208 12 H -0.182 1.182 13 C 0.284 3.716 14 O -0.457 6.457 15 C -0.077 4.077 16 N -0.277 5.277 17 C -0.068 4.068 18 C -0.181 4.181 19 C 0.050 3.950 20 O -0.395 6.395 21 C -0.146 4.146 22 C -0.063 4.063 23 H 0.113 0.887 24 H 0.064 0.936 25 H 0.078 0.922 26 H 0.114 0.886 27 H 0.090 0.910 28 H 0.034 0.966 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.135 0.865 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.120 0.880 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.245 0.755 39 H 0.093 0.907 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.125 -4.806 -17.744 23.184 hybrid contribution -0.200 -0.041 0.537 0.575 sum -14.325 -4.847 -17.207 22.908 Atomic orbital electron populations 1.22154 0.93998 1.03627 1.01958 1.21767 0.95569 0.81151 1.03950 1.48086 1.64526 1.15234 1.05722 1.19222 0.94545 0.92954 0.82716 1.21585 0.97213 1.31954 1.06594 0.95408 1.25853 0.96730 0.97144 0.99003 1.70055 1.17459 1.46667 1.24464 0.85713 0.79123 0.79130 0.78999 1.17348 1.20786 1.18213 1.21269 0.77177 0.86767 0.86378 1.90634 1.46694 1.20619 1.87749 1.21956 1.03503 0.94792 0.87445 1.61415 1.49819 1.13639 1.02832 1.22140 1.01863 0.95993 0.86759 1.22287 0.99617 0.96850 0.99346 1.21819 0.97247 0.88462 0.87429 1.86506 1.93637 1.39103 1.20230 1.21469 1.01983 0.97935 0.93246 1.21983 0.92267 0.92930 0.99156 0.88667 0.93573 0.92161 0.88561 0.91047 0.96635 0.93689 0.92306 0.86503 0.89088 0.89378 0.92318 0.87977 0.92686 0.90837 0.75484 0.90744 0.93478 0.92954 0.92349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.33 10.18 71.98 0.73 -2.60 16 2 C 0.10 2.77 5.84 86.38 0.50 3.27 16 3 N -0.60 -24.43 2.46 -826.18 -2.03 -26.46 16 4 C 0.23 11.33 4.23 85.63 0.36 11.69 16 5 C -0.53 -32.15 9.94 25.60 0.25 -31.90 16 6 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16 7 C 0.01 0.63 5.47 84.66 0.46 1.10 16 8 N -0.95 -60.91 13.96 21.45 0.30 -60.61 16 9 Si 0.95 45.38 27.47 68.60 1.88 47.26 16 10 H -0.25 -10.84 7.11 99.48 0.71 -10.14 16 11 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 12 H -0.26 -12.01 6.54 99.48 0.65 -11.36 16 13 C 0.50 20.24 7.20 87.65 0.63 20.87 16 14 O -0.58 -29.88 14.29 -3.04 -0.04 -29.93 16 15 C 0.05 1.47 3.91 85.56 0.33 1.80 16 16 N -0.55 -15.42 4.35 -900.94 -3.92 -19.33 16 17 C 0.06 1.10 5.46 86.33 0.47 1.57 16 18 C -0.14 -2.53 5.72 30.64 0.18 -2.35 16 19 C 0.11 2.10 3.54 30.67 0.11 2.21 16 20 O -0.59 -11.57 13.33 -148.98 -1.99 -13.55 16 21 C -0.11 -2.86 5.75 30.65 0.18 -2.68 16 22 C 0.06 1.79 5.12 86.33 0.44 2.23 16 23 H 0.09 1.39 8.14 -2.39 -0.02 1.38 16 24 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.06 1.15 7.12 -2.38 -0.02 1.13 16 26 H 0.10 2.13 6.61 -2.39 -0.02 2.11 16 27 H 0.07 2.21 8.07 -2.39 -0.02 2.19 16 28 H 0.02 0.85 6.48 -2.39 -0.02 0.83 16 29 H 0.05 2.03 7.50 -2.39 -0.02 2.02 16 30 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 31 H 0.12 2.81 7.55 -2.39 -0.02 2.79 16 32 H 0.09 1.86 6.83 -2.39 -0.02 1.84 16 33 H 0.09 1.48 8.01 -2.39 -0.02 1.46 16 34 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 38 H 0.40 3.71 9.09 -74.05 -0.67 3.04 16 39 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 41 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.06 2.09 6.06 -2.39 -0.01 2.08 16 Total: -1.00 -82.96 331.92 -0.86 -83.82 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 0.27 Total: 13.58 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: 4.66 Total: 5.22 kcal Atomic # 7 Polarization: -100.76 SS G_CDS: -5.65 Total: -106.40 kcal Atomic # 8 Polarization: -41.45 SS G_CDS: -2.03 Total: -43.48 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.88 Total: 47.26 kcal Total: -82.96 -0.86 -83.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079845989.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.305 kcal (2) G-P(sol) polarization free energy of solvation -82.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds