Wall clock time and date at job start Mon Mar 30 2020 00:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46505 * 109.46651 * 2 1 4 4 C 1.46494 * 119.99819 * 269.99880 * 3 2 1 5 5 C 1.50703 * 109.47525 * 270.00509 * 4 3 2 6 6 H 1.08000 * 119.99472 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00191 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00318 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99862 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47043 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47080 * 119.99274 * 9 7 5 12 12 H 1.48496 * 109.47018 * 239.99797 * 9 7 5 13 13 C 1.34773 * 120.00060 * 90.00473 * 3 2 1 14 14 O 1.21283 * 120.00014 * 179.97438 * 13 3 2 15 15 C 1.50698 * 119.99997 * 359.97438 * 13 3 2 16 16 N 1.46901 * 109.47385 * 180.02562 * 15 13 3 17 17 C 1.46897 * 111.00437 * 168.99929 * 16 15 13 18 18 C 1.53005 * 109.46741 * 286.25498 * 17 16 15 19 19 O 1.42896 * 109.47077 * 68.59286 * 18 17 16 20 20 C 1.46905 * 110.99561 * 292.95409 * 16 15 13 21 21 C 1.52999 * 117.49413 * 243.20568 * 20 16 15 22 22 C 1.53001 * 117.49487 * 174.54851 * 20 16 15 23 23 H 1.09002 * 109.46968 * 299.99619 * 1 2 3 24 24 H 1.08996 * 109.47397 * 60.00312 * 1 2 3 25 25 H 1.09002 * 109.46385 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46968 * 240.00381 * 2 1 3 27 27 H 1.08996 * 109.47397 * 119.99687 * 2 1 3 28 28 H 1.08998 * 109.47452 * 30.00201 * 4 3 2 29 29 H 1.08999 * 109.47330 * 150.00361 * 4 3 2 30 30 H 0.96995 * 119.99893 * 180.02562 * 8 7 5 31 31 H 1.08999 * 109.47450 * 60.00253 * 15 13 3 32 32 H 1.09006 * 109.47317 * 300.00003 * 15 13 3 33 33 H 1.08994 * 109.47429 * 166.25737 * 17 16 15 34 34 H 1.08999 * 109.47416 * 46.25463 * 17 16 15 35 35 H 1.08992 * 109.47383 * 308.58963 * 18 17 16 36 36 H 1.08998 * 109.46722 * 188.59061 * 18 17 16 37 37 H 0.96703 * 114.00175 * 179.97438 * 19 18 17 38 38 H 1.09003 * 115.54956 * 28.87926 * 20 16 15 39 39 H 1.09001 * 117.50413 * 0.02562 * 21 20 16 40 40 H 1.09005 * 117.49340 * 145.02326 * 21 20 16 41 41 H 1.09005 * 117.49481 * 214.97571 * 22 20 16 42 42 H 1.08994 * 117.50463 * 359.97438 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7039 6 1 4.3428 1.2310 -1.0959 7 6 4.1492 2.3906 -2.8776 8 7 3.3492 3.1266 -3.6177 9 14 5.9137 2.0977 -3.4166 10 1 6.6013 1.2425 -2.4160 11 1 5.9216 1.4190 -4.7373 12 1 6.6208 3.3990 -3.5243 13 6 2.2430 2.0166 1.1672 14 8 2.6476 3.1600 1.1671 15 6 1.9914 1.3064 2.4722 16 7 2.3091 2.2065 3.5888 17 6 1.8350 1.6517 4.8637 18 6 0.3121 1.7780 4.9398 19 8 -0.2870 0.9008 3.9840 20 6 3.7493 2.4914 3.6418 21 6 4.5160 2.0276 4.8820 22 6 4.2292 3.5164 4.6714 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.5817 1.6877 -2.0284 29 1 2.0954 3.1411 -1.1384 30 1 3.6753 3.5171 -4.4436 31 1 2.6213 0.4187 2.5302 32 1 0.9433 1.0125 2.5299 33 1 2.2868 2.2012 5.6895 34 1 2.1162 0.6007 4.9296 35 1 0.0213 2.8056 4.7221 36 1 -0.0251 1.5093 5.9409 37 1 -1.2536 0.9280 3.9767 38 1 4.2709 2.4567 2.6853 39 1 3.9519 1.5107 5.6584 40 1 5.5422 1.6881 4.7414 41 1 5.0668 4.1557 4.3924 42 1 3.4764 3.9797 5.3091 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079990378.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:34 Heat of formation + Delta-G solvation = -42.104722 kcal Electronic energy + Delta-G solvation = -22022.825229 eV Core-core repulsion = 18811.558362 eV Total energy + Delta-G solvation = -3211.266867 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.60029 -38.10485 -36.73137 -35.07023 -33.51033 -32.68914 -30.05974 -29.70148 -27.41518 -25.45696 -22.98479 -22.90770 -22.29236 -22.03722 -19.82444 -18.29663 -17.54343 -16.47488 -16.33684 -16.21131 -15.87668 -15.04824 -14.49554 -14.40008 -14.12251 -13.78292 -13.25925 -13.07808 -12.98138 -12.39839 -12.17147 -12.03646 -11.85193 -11.73392 -11.62339 -11.31296 -11.21596 -11.10712 -10.81486 -10.67357 -10.47709 -10.37692 -10.18195 -10.04733 -9.93121 -9.53242 -8.65641 -8.38105 -7.89780 -7.50502 -5.98393 -4.02631 3.32632 3.39932 3.43712 3.62698 3.66540 4.04386 4.15967 4.30179 4.50326 4.93151 4.97763 5.09136 5.16417 5.18846 5.27443 5.36032 5.42481 5.47151 5.52061 5.70079 5.71201 5.76633 5.84477 5.90408 6.02683 6.14762 6.16593 6.21442 6.25615 6.34923 6.61721 7.08143 7.21799 7.28275 7.52225 7.55880 7.69228 7.99764 8.31912 8.59642 8.98816 9.29935 9.62725 11.09572 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.018842 B = 0.005767 C = 0.004757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.685549 B = 4854.352729 C = 5884.213879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.108 3.892 3 N -0.601 5.601 4 C 0.247 3.753 5 C -0.522 4.522 6 H 0.056 0.944 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.505 3.495 14 O -0.527 6.527 15 C 0.028 3.972 16 N -0.486 5.486 17 C 0.049 3.951 18 C 0.079 3.921 19 O -0.568 6.568 20 C 0.040 3.960 21 C -0.231 4.231 22 C -0.169 4.169 23 H 0.054 0.946 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.079 0.921 27 H 0.061 0.939 28 H 0.030 0.970 29 H 0.042 0.958 30 H 0.262 0.738 31 H 0.051 0.949 32 H 0.131 0.869 33 H 0.090 0.910 34 H 0.045 0.955 35 H 0.057 0.943 36 H 0.047 0.953 37 H 0.376 0.624 38 H 0.126 0.874 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.231 -6.626 17.189 19.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.016 4.016 3 N -0.334 5.334 4 C 0.128 3.872 5 C -0.561 4.561 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.291 3.709 14 O -0.403 6.403 15 C -0.102 4.102 16 N -0.207 5.207 17 C -0.078 4.078 18 C 0.001 3.999 19 O -0.375 6.375 20 C -0.069 4.069 21 C -0.270 4.270 22 C -0.207 4.207 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.097 0.903 27 H 0.080 0.920 28 H 0.048 0.952 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.148 0.852 33 H 0.108 0.892 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.223 0.777 38 H 0.143 0.857 39 H 0.112 0.888 40 H 0.109 0.891 41 H 0.114 0.886 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.660 -5.597 16.783 18.575 hybrid contribution 0.860 -0.775 -0.128 1.165 sum -4.800 -6.372 16.655 18.467 Atomic orbital electron populations 1.22209 0.96837 1.01210 1.02374 1.21372 0.93574 0.84377 1.02301 1.48234 1.64388 1.13155 1.07652 1.19216 0.96026 0.93656 0.78293 1.21490 0.97022 1.31512 1.06081 0.92591 1.24931 0.97723 0.95025 0.96469 1.69944 1.35524 1.33655 1.14337 0.86473 0.84852 0.77994 0.78270 1.19897 1.21010 1.20923 1.20249 0.78625 0.87127 0.84868 1.90661 1.44945 1.17780 1.86958 1.22465 1.04672 0.93345 0.89720 1.61470 1.13087 1.44123 1.02059 1.22310 0.93890 0.98739 0.92900 1.22263 0.93063 0.93811 0.90792 1.86435 1.24611 1.65781 1.60632 1.22689 0.87329 1.02336 0.94582 1.23654 1.02141 0.98482 1.02748 1.22973 1.03011 0.91576 1.03094 0.92653 0.92272 0.92435 0.90270 0.92012 0.95202 0.93977 0.92863 0.93078 0.85196 0.89172 0.93713 0.92442 0.93438 0.77664 0.85673 0.88762 0.89056 0.88603 0.88923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.40 10.24 37.16 0.38 -2.02 16 2 C 0.11 1.84 5.93 -4.04 -0.02 1.82 16 3 N -0.60 -13.25 2.46 -175.06 -0.43 -13.68 16 4 C 0.25 6.66 5.16 -5.19 -0.03 6.64 16 5 C -0.52 -15.14 9.39 -34.44 -0.32 -15.46 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 9 Si 0.90 22.27 29.54 -169.99 -5.02 17.25 16 10 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 13 C 0.51 11.10 7.19 -10.99 -0.08 11.02 16 14 O -0.53 -13.81 14.51 5.56 0.08 -13.73 16 15 C 0.03 0.47 3.78 -4.98 -0.02 0.46 16 16 N -0.49 -7.68 4.38 -228.08 -1.00 -8.68 16 17 C 0.05 0.58 4.18 -3.82 -0.02 0.56 16 18 C 0.08 0.78 7.33 37.16 0.27 1.05 16 19 O -0.57 -5.83 10.69 -35.23 -0.38 -6.21 16 20 C 0.04 0.65 5.23 -67.71 -0.35 0.29 16 21 C -0.23 -2.88 9.53 -26.69 -0.25 -3.14 16 22 C -0.17 -2.29 9.95 -26.69 -0.27 -2.55 16 23 H 0.05 0.77 7.22 -51.93 -0.37 0.39 16 24 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 27 H 0.06 0.92 6.44 -51.93 -0.33 0.58 16 28 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 29 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 30 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.05 0.83 7.37 -51.93 -0.38 0.44 16 32 H 0.13 2.03 4.02 -51.93 -0.21 1.82 16 33 H 0.09 0.93 5.70 -51.93 -0.30 0.63 16 34 H 0.04 0.52 7.91 -51.93 -0.41 0.11 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.38 2.25 9.12 45.56 0.42 2.67 16 38 H 0.13 2.46 6.77 -51.93 -0.35 2.10 16 39 H 0.09 1.02 5.94 -51.93 -0.31 0.71 16 40 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.09 1.16 7.68 -51.93 -0.40 0.76 16 LS Contribution 336.24 15.07 5.07 5.07 Total: -1.00 -34.56 336.24 -7.70 -42.27 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -5.96 Total: 3.78 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -0.81 Total: 0.33 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: -0.69 Total: -48.75 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.30 Total: -19.94 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.56 -7.70 -42.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079990378.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.163 kcal (2) G-P(sol) polarization free energy of solvation -34.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds