Wall clock time and date at job start Mon Mar 30 2020 00:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46505 * 109.46651 * 2 1 4 4 C 1.46494 * 119.99819 * 269.99880 * 3 2 1 5 5 C 1.50703 * 109.47525 * 270.00509 * 4 3 2 6 6 H 1.08000 * 119.99472 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00191 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00318 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99862 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47043 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47080 * 119.99274 * 9 7 5 12 12 H 1.48496 * 109.47018 * 239.99797 * 9 7 5 13 13 C 1.34773 * 120.00060 * 90.00473 * 3 2 1 14 14 O 1.21283 * 120.00014 * 179.97438 * 13 3 2 15 15 C 1.50698 * 119.99997 * 359.97438 * 13 3 2 16 16 N 1.46901 * 109.47385 * 180.02562 * 15 13 3 17 17 C 1.46897 * 111.00437 * 168.99929 * 16 15 13 18 18 C 1.53005 * 109.46741 * 286.25498 * 17 16 15 19 19 O 1.42896 * 109.47077 * 68.59286 * 18 17 16 20 20 C 1.46905 * 110.99561 * 292.95409 * 16 15 13 21 21 C 1.52999 * 117.49413 * 243.20568 * 20 16 15 22 22 C 1.53001 * 117.49487 * 174.54851 * 20 16 15 23 23 H 1.09002 * 109.46968 * 299.99619 * 1 2 3 24 24 H 1.08996 * 109.47397 * 60.00312 * 1 2 3 25 25 H 1.09002 * 109.46385 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46968 * 240.00381 * 2 1 3 27 27 H 1.08996 * 109.47397 * 119.99687 * 2 1 3 28 28 H 1.08998 * 109.47452 * 30.00201 * 4 3 2 29 29 H 1.08999 * 109.47330 * 150.00361 * 4 3 2 30 30 H 0.96995 * 119.99893 * 180.02562 * 8 7 5 31 31 H 1.08999 * 109.47450 * 60.00253 * 15 13 3 32 32 H 1.09006 * 109.47317 * 300.00003 * 15 13 3 33 33 H 1.08994 * 109.47429 * 166.25737 * 17 16 15 34 34 H 1.08999 * 109.47416 * 46.25463 * 17 16 15 35 35 H 1.08992 * 109.47383 * 308.58963 * 18 17 16 36 36 H 1.08998 * 109.46722 * 188.59061 * 18 17 16 37 37 H 0.96703 * 114.00175 * 179.97438 * 19 18 17 38 38 H 1.09003 * 115.54956 * 28.87926 * 20 16 15 39 39 H 1.09001 * 117.50413 * 0.02562 * 21 20 16 40 40 H 1.09005 * 117.49340 * 145.02326 * 21 20 16 41 41 H 1.09005 * 117.49481 * 214.97571 * 22 20 16 42 42 H 1.08994 * 117.50463 * 359.97438 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7039 6 1 4.3428 1.2310 -1.0959 7 6 4.1492 2.3906 -2.8776 8 7 3.3492 3.1266 -3.6177 9 14 5.9137 2.0977 -3.4166 10 1 6.6013 1.2425 -2.4160 11 1 5.9216 1.4190 -4.7373 12 1 6.6208 3.3990 -3.5243 13 6 2.2430 2.0166 1.1672 14 8 2.6476 3.1600 1.1671 15 6 1.9914 1.3064 2.4722 16 7 2.3091 2.2065 3.5888 17 6 1.8350 1.6517 4.8637 18 6 0.3121 1.7780 4.9398 19 8 -0.2870 0.9008 3.9840 20 6 3.7493 2.4914 3.6418 21 6 4.5160 2.0276 4.8820 22 6 4.2292 3.5164 4.6714 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.5817 1.6877 -2.0284 29 1 2.0954 3.1411 -1.1384 30 1 3.6753 3.5171 -4.4436 31 1 2.6213 0.4187 2.5302 32 1 0.9433 1.0125 2.5299 33 1 2.2868 2.2012 5.6895 34 1 2.1162 0.6007 4.9296 35 1 0.0213 2.8056 4.7221 36 1 -0.0251 1.5093 5.9409 37 1 -1.2536 0.9280 3.9767 38 1 4.2709 2.4567 2.6853 39 1 3.9519 1.5107 5.6584 40 1 5.5422 1.6881 4.7414 41 1 5.0668 4.1557 4.3924 42 1 3.4764 3.9797 5.3091 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079990378.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:33 Heat of formation + Delta-G solvation = -68.718984 kcal Electronic energy + Delta-G solvation = -22023.979310 eV Core-core repulsion = 18811.558362 eV Total energy + Delta-G solvation = -3212.420948 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.02609 -39.49102 -37.54190 -36.82727 -34.99425 -34.49980 -31.65652 -30.84099 -29.17137 -27.00971 -24.71834 -23.99257 -23.81510 -23.08074 -21.02218 -19.77437 -18.66526 -18.46664 -17.81856 -17.43593 -17.20559 -16.75350 -16.05865 -15.82746 -15.38270 -14.95183 -14.66035 -14.41256 -14.36035 -14.13790 -13.58711 -13.34155 -13.25204 -13.09299 -12.94303 -12.77168 -12.68838 -12.57786 -12.44593 -12.17501 -12.15183 -11.86839 -11.69534 -11.44095 -11.26737 -10.77537 -10.65648 -10.37174 -9.37623 -9.03821 -8.22564 -6.37718 1.33901 1.36573 1.48344 1.93668 2.25185 2.40641 2.82156 3.04299 3.06206 3.47125 3.73134 3.95010 4.03044 4.08699 4.15548 4.22154 4.31167 4.45389 4.48037 4.52598 4.65154 4.69100 4.73534 4.88306 4.94105 4.99460 5.02538 5.04999 5.07071 5.09531 5.21849 5.23860 5.42120 5.59008 5.88771 6.01659 6.08033 6.15557 6.70919 6.87419 7.00023 7.28887 7.59161 8.84546 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.018842 B = 0.005767 C = 0.004757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.685549 B = 4854.352729 C = 5884.213879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.101 3.899 3 N -0.607 5.607 4 C 0.265 3.735 5 C -0.540 4.540 6 H 0.049 0.951 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.968 3.032 10 H -0.269 1.269 11 H -0.267 1.267 12 H -0.281 1.281 13 C 0.495 3.505 14 O -0.581 6.581 15 C 0.048 3.952 16 N -0.502 5.502 17 C 0.046 3.954 18 C 0.081 3.919 19 O -0.587 6.587 20 C 0.004 3.996 21 C -0.197 4.197 22 C -0.166 4.166 23 H 0.061 0.939 24 H 0.038 0.962 25 H 0.095 0.905 26 H 0.070 0.930 27 H 0.091 0.909 28 H 0.020 0.980 29 H -0.007 1.007 30 H 0.267 0.733 31 H 0.062 0.938 32 H 0.149 0.851 33 H 0.107 0.893 34 H 0.052 0.948 35 H 0.044 0.956 36 H 0.082 0.918 37 H 0.395 0.605 38 H 0.078 0.922 39 H 0.121 0.879 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.255 -8.687 19.391 22.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.021 4.021 3 N -0.339 5.339 4 C 0.143 3.857 5 C -0.579 4.579 6 H 0.068 0.932 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.792 3.208 10 H -0.193 1.193 11 H -0.192 1.192 12 H -0.207 1.207 13 C 0.284 3.716 14 O -0.461 6.461 15 C -0.082 4.082 16 N -0.225 5.225 17 C -0.081 4.081 18 C 0.003 3.997 19 O -0.396 6.396 20 C -0.105 4.105 21 C -0.236 4.236 22 C -0.204 4.204 23 H 0.080 0.920 24 H 0.057 0.943 25 H 0.113 0.887 26 H 0.089 0.911 27 H 0.109 0.891 28 H 0.038 0.962 29 H 0.011 0.989 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.166 0.834 33 H 0.125 0.875 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.100 0.900 37 H 0.245 0.755 38 H 0.096 0.904 39 H 0.139 0.861 40 H 0.115 0.885 41 H 0.109 0.891 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.723 -7.706 19.007 21.293 hybrid contribution 0.822 -0.112 -0.805 1.156 sum -4.901 -7.818 18.202 20.407 Atomic orbital electron populations 1.22120 0.94332 1.03426 1.01682 1.21692 0.95604 0.81494 1.03309 1.48280 1.64481 1.14988 1.06184 1.18649 0.95197 0.91368 0.80488 1.21718 0.97854 1.31836 1.06465 0.93232 1.25867 1.02445 0.94456 0.96401 1.70062 1.37710 1.34274 1.14818 0.85361 0.78951 0.78010 0.78428 1.19291 1.19176 1.20696 1.21286 0.77181 0.86761 0.86394 1.90620 1.47239 1.20393 1.87860 1.22321 1.05798 0.92856 0.87218 1.61476 1.12935 1.44626 1.03436 1.22509 0.95305 0.99135 0.91141 1.22262 0.91799 0.93219 0.92407 1.86320 1.26506 1.65729 1.61049 1.22482 0.88026 1.06067 0.93929 1.23688 1.02004 0.97428 1.00480 1.23045 1.03006 0.92382 1.01979 0.91982 0.94319 0.88665 0.91108 0.89098 0.96152 0.98853 0.92401 0.92038 0.83382 0.87474 0.92973 0.93720 0.90016 0.75464 0.90432 0.86135 0.88543 0.89075 0.87528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.25 10.24 71.98 0.74 -3.51 16 2 C 0.10 3.39 5.93 86.38 0.51 3.91 16 3 N -0.61 -27.69 2.46 -826.15 -2.03 -29.72 16 4 C 0.26 15.08 5.16 85.64 0.44 15.52 16 5 C -0.54 -32.53 9.39 25.60 0.24 -32.29 16 6 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 7 C 0.01 0.42 5.46 84.66 0.46 0.88 16 8 N -0.93 -57.95 13.29 21.45 0.28 -57.66 16 9 Si 0.97 46.37 29.54 68.60 2.03 48.40 16 10 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 12 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 13 C 0.50 22.55 7.19 87.66 0.63 23.18 16 14 O -0.58 -32.40 14.51 -3.04 -0.04 -32.44 16 15 C 0.05 1.59 3.78 85.56 0.32 1.91 16 16 N -0.50 -15.48 4.38 -875.51 -3.83 -19.32 16 17 C 0.05 0.94 4.18 86.31 0.36 1.30 16 18 C 0.08 1.35 7.33 71.98 0.53 1.88 16 19 O -0.59 -10.20 10.69 -148.98 -1.59 -11.79 16 20 C 0.00 0.14 5.23 44.91 0.23 0.38 16 21 C -0.20 -4.49 9.53 30.62 0.29 -4.20 16 22 C -0.17 -4.36 9.95 30.62 0.30 -4.06 16 23 H 0.06 1.59 7.22 -2.39 -0.02 1.58 16 24 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.07 2.48 8.07 -2.39 -0.02 2.46 16 27 H 0.09 2.51 6.44 -2.39 -0.02 2.50 16 28 H 0.02 1.18 8.07 -2.39 -0.02 1.16 16 29 H -0.01 -0.44 7.42 -2.39 -0.02 -0.46 16 30 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 31 H 0.06 1.90 7.37 -2.39 -0.02 1.88 16 32 H 0.15 4.34 4.02 -2.38 -0.01 4.33 16 33 H 0.11 1.81 5.70 -2.39 -0.01 1.79 16 34 H 0.05 1.01 7.91 -2.39 -0.02 0.99 16 35 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.39 3.49 9.12 -74.06 -0.68 2.82 16 38 H 0.08 3.25 6.77 -2.39 -0.02 3.23 16 39 H 0.12 2.12 5.94 -2.39 -0.01 2.10 16 40 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 41 H 0.09 2.42 8.14 -2.38 -0.02 2.41 16 42 H 0.11 2.47 7.68 -2.39 -0.02 2.45 16 Total: -1.00 -79.84 336.24 0.22 -79.62 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: 0.34 Total: 18.01 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: 5.07 Total: 4.91 kcal Atomic # 7 Polarization: -101.12 SS G_CDS: -5.58 Total: -106.70 kcal Atomic # 8 Polarization: -42.60 SS G_CDS: -1.64 Total: -44.24 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -79.84 0.22 -79.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079990378.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.900 kcal (2) G-P(sol) polarization free energy of solvation -79.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds