Wall clock time and date at job start Mon Mar 30 2020 00:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46907 * 109.46654 * 2 1 4 4 C 1.46904 * 110.99284 * 164.11382 * 3 2 1 5 5 C 1.50693 * 109.47480 * 293.94852 * 4 3 2 6 6 H 1.08002 * 120.00082 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00003 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99727 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00173 * 0.02562 * 7 5 4 10 10 H 1.48507 * 109.46859 * 90.00035 * 9 7 5 11 11 H 1.48496 * 109.47311 * 210.00079 * 9 7 5 12 12 H 1.48501 * 109.47024 * 330.00257 * 9 7 5 13 13 C 1.46897 * 110.99998 * 288.06203 * 3 2 1 14 14 C 1.50694 * 109.46824 * 163.79152 * 13 3 2 15 15 O 1.21282 * 120.00575 * 354.46268 * 14 13 3 16 16 N 1.34778 * 119.99725 * 174.46164 * 14 13 3 17 17 C 1.47152 * 120.98546 * 0.02562 * 16 14 13 18 18 C 1.53291 * 108.38827 * 129.43883 * 17 16 14 19 19 O 1.42958 * 109.22054 * 52.30708 * 18 17 16 20 20 C 1.42968 * 114.16648 * 297.41593 * 19 18 17 21 21 H 1.08997 * 109.51044 * 302.60613 * 20 19 18 22 22 C 1.52995 * 109.51177 * 182.50685 * 20 19 18 23 23 C 1.47158 * 120.98453 * 179.71926 * 16 14 13 24 24 H 1.09002 * 109.46967 * 305.46757 * 1 2 3 25 25 H 1.08993 * 109.47467 * 65.47180 * 1 2 3 26 26 H 1.09003 * 109.46872 * 185.47447 * 1 2 3 27 27 H 1.08992 * 109.47331 * 239.99686 * 2 1 3 28 28 H 1.09002 * 109.47144 * 119.99470 * 2 1 3 29 29 H 1.09005 * 109.47473 * 53.95422 * 4 3 2 30 30 H 1.09006 * 109.46762 * 173.94892 * 4 3 2 31 31 H 0.97005 * 120.00035 * 180.02562 * 8 7 5 32 32 H 1.08991 * 109.47570 * 283.80072 * 13 3 2 33 33 H 1.09001 * 109.46745 * 43.79565 * 13 3 2 34 34 H 1.08999 * 109.67868 * 249.16785 * 17 16 14 35 35 H 1.09006 * 109.67782 * 9.67460 * 17 16 14 36 36 H 1.09003 * 109.51285 * 172.22759 * 18 17 16 37 37 H 1.08994 * 109.51707 * 292.32787 * 18 17 16 38 38 H 1.08998 * 109.47582 * 60.00289 * 22 20 19 39 39 H 1.09003 * 109.47024 * 180.02562 * 22 20 19 40 40 H 1.08999 * 109.47634 * 299.99667 * 22 20 19 41 41 H 1.09007 * 109.67770 * 350.28517 * 23 16 14 42 42 H 1.08999 * 109.68145 * 110.83087 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4387 1.4417 0.3754 5 6 3.5969 1.0056 1.8092 6 1 2.7299 0.7150 2.3840 7 6 4.8483 0.9776 2.3872 8 7 4.9864 0.5965 3.6383 9 14 6.3477 1.4809 1.3933 10 1 6.5799 2.9391 1.5516 11 1 7.5365 0.7348 1.8784 12 1 6.1187 1.1689 -0.0404 13 6 1.7941 2.0231 -1.3038 14 6 1.9289 3.5173 -1.1618 15 8 2.0874 4.0105 -0.0652 16 7 1.8734 4.3057 -2.2535 17 6 1.6813 3.7305 -3.5943 18 6 0.5329 4.4783 -4.2813 19 8 0.7858 5.8842 -4.2239 20 6 0.8385 6.4157 -2.8977 21 1 -0.0974 6.2010 -2.3820 22 6 1.0508 7.9295 -2.9621 23 6 1.9964 5.7676 -2.1393 24 1 -0.3633 0.5963 0.8370 25 1 -0.3634 0.4266 -0.9348 26 1 -0.3633 -1.0230 0.0980 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 4.0125 0.7781 -0.2716 30 1 3.8036 2.4628 0.2638 31 1 5.8668 0.5772 4.0452 32 1 2.5309 1.6581 -2.0193 33 1 0.7923 1.7808 -1.6585 34 1 2.5950 3.8455 -4.1774 35 1 1.4318 2.6730 -3.5078 36 1 0.4644 4.1629 -5.3224 37 1 -0.4039 4.2550 -3.7708 38 1 0.2251 8.3895 -3.5049 39 1 1.0913 8.3340 -1.9507 40 1 1.9877 8.1436 -3.4763 41 1 1.9547 6.0586 -1.0896 42 1 2.9424 6.0915 -2.5732 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081039408.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:11 Heat of formation + Delta-G solvation = -63.589164 kcal Electronic energy + Delta-G solvation = -21870.999278 eV Core-core repulsion = 18658.800776 eV Total energy + Delta-G solvation = -3212.198502 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.32429 -38.51394 -36.50340 -34.67953 -33.22490 -32.49959 -30.42173 -29.00923 -28.85358 -26.67165 -24.80345 -23.55722 -22.11388 -21.48448 -20.21786 -18.86708 -17.19703 -16.89587 -16.73402 -15.89569 -15.71816 -15.21395 -14.90963 -14.65768 -14.31181 -13.80667 -13.65329 -13.34411 -13.03614 -12.87780 -12.56333 -12.49747 -12.33065 -12.14205 -11.81904 -11.72166 -11.43177 -11.23579 -11.12328 -10.84953 -10.61917 -10.44251 -10.25892 -10.11797 -9.84101 -9.44430 -9.11464 -8.52740 -8.47365 -7.39708 -5.98200 -3.93688 2.88826 2.97099 3.33468 3.39529 3.41196 3.47330 4.45069 4.48262 4.56193 4.73023 4.80840 4.85347 4.90798 5.04331 5.09496 5.32649 5.34096 5.38980 5.44466 5.51258 5.55499 5.59922 5.65059 5.72057 5.77464 5.87258 5.92042 6.00185 6.21410 6.43557 6.64473 6.68439 6.90750 6.91706 7.01590 7.40806 7.68575 7.89066 8.03775 8.52770 8.72339 9.10386 9.63945 11.15194 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.020419 B = 0.005276 C = 0.004608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.910055 B = 5305.496901 C = 6075.299921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.056 3.944 3 N -0.510 5.510 4 C 0.163 3.837 5 C -0.500 4.500 6 H 0.081 0.919 7 C 0.069 3.931 8 N -0.902 5.902 9 Si 0.873 3.127 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.270 1.270 13 C 0.036 3.964 14 C 0.514 3.486 15 O -0.495 6.495 16 N -0.630 5.630 17 C 0.074 3.926 18 C 0.049 3.951 19 O -0.379 6.379 20 C 0.074 3.926 21 H 0.063 0.937 22 C -0.143 4.143 23 C 0.084 3.916 24 H 0.063 0.937 25 H 0.040 0.960 26 H 0.052 0.948 27 H 0.019 0.981 28 H 0.096 0.904 29 H -0.016 1.016 30 H 0.031 0.969 31 H 0.262 0.738 32 H 0.051 0.949 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.056 0.944 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.102 0.898 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.455 7.639 -18.433 22.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.072 4.072 3 N -0.234 5.234 4 C 0.037 3.963 5 C -0.538 4.538 6 H 0.099 0.901 7 C -0.132 4.132 8 N -0.541 5.541 9 Si 0.701 3.299 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.195 1.195 13 C -0.095 4.095 14 C 0.301 3.699 15 O -0.366 6.366 16 N -0.368 5.368 17 C -0.049 4.049 18 C -0.028 4.028 19 O -0.298 6.298 20 C 0.016 3.984 21 H 0.081 0.919 22 C -0.200 4.200 23 C -0.039 4.039 24 H 0.082 0.918 25 H 0.059 0.941 26 H 0.071 0.929 27 H 0.038 0.962 28 H 0.114 0.886 29 H 0.002 0.998 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.112 0.888 34 H 0.093 0.907 35 H 0.112 0.888 36 H 0.123 0.877 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.120 0.880 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.451 8.226 -17.432 21.468 hybrid contribution 1.375 -0.369 -0.974 1.725 sum -8.076 7.857 -18.406 21.581 Atomic orbital electron populations 1.21815 0.96328 1.00802 1.01318 1.22047 0.94394 0.89143 1.01601 1.61708 1.22236 1.16296 1.23173 1.20232 0.82547 0.96301 0.97212 1.20967 0.94697 1.43528 0.94647 0.90065 1.24853 0.98555 0.95063 0.94762 1.69892 1.23459 1.48603 1.12169 0.86896 0.83099 0.79136 0.80795 1.20172 1.21225 1.19541 1.21978 1.01908 0.91388 0.94270 1.20897 0.76076 0.89452 0.83464 1.90759 1.45499 1.75274 1.25071 1.48252 1.75274 1.06549 1.06765 1.22378 0.99655 0.98890 0.84019 1.22949 0.96740 0.81491 1.01653 1.87940 1.92817 1.22021 1.27066 1.22415 0.97846 0.94559 0.83603 0.91924 1.21723 1.03052 0.92364 1.02890 1.22145 0.98495 0.80199 1.03020 0.91785 0.94130 0.92922 0.96230 0.88557 0.99848 0.95092 0.92767 0.93153 0.88818 0.90718 0.88778 0.87732 0.92592 0.91536 0.90598 0.91584 0.88021 0.91133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.88 37.16 0.37 -1.83 16 2 C 0.06 1.05 5.53 -3.82 -0.02 1.03 16 3 N -0.51 -11.01 4.04 -237.52 -0.96 -11.97 16 4 C 0.16 4.17 3.43 -4.98 -0.02 4.16 16 5 C -0.50 -14.82 8.84 -34.44 -0.30 -15.12 16 6 H 0.08 2.60 7.50 -52.49 -0.39 2.21 16 7 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 8 N -0.90 -28.45 13.96 55.43 0.77 -27.68 16 9 Si 0.87 22.55 27.47 -169.99 -4.67 17.88 16 10 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.27 -6.70 6.54 56.52 0.37 -6.33 16 13 C 0.04 0.62 3.68 -4.98 -0.02 0.60 16 14 C 0.51 9.35 7.23 -10.99 -0.08 9.27 16 15 O -0.49 -11.45 14.69 5.56 0.08 -11.37 16 16 N -0.63 -8.86 3.03 -172.55 -0.52 -9.38 16 17 C 0.07 0.75 6.50 -3.54 -0.02 0.72 16 18 C 0.05 0.43 6.98 37.31 0.26 0.69 16 19 O -0.38 -4.13 10.39 -35.23 -0.37 -4.50 16 20 C 0.07 0.79 3.38 -26.82 -0.09 0.70 16 21 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 22 C -0.14 -1.20 9.57 37.15 0.36 -0.84 16 23 C 0.08 1.08 5.90 -3.77 -0.02 1.06 16 24 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 25 H 0.04 0.53 6.73 -51.93 -0.35 0.18 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.02 0.33 8.05 -51.93 -0.42 -0.08 16 28 H 0.10 2.08 6.59 -51.93 -0.34 1.74 16 29 H -0.02 -0.41 7.18 -51.93 -0.37 -0.78 16 30 H 0.03 0.85 5.99 -51.93 -0.31 0.53 16 31 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 32 H 0.05 0.79 7.65 -51.93 -0.40 0.39 16 33 H 0.09 1.29 6.14 -51.93 -0.32 0.97 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.09 0.80 6.08 -51.93 -0.32 0.49 16 36 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.10 1.47 7.08 -51.92 -0.37 1.10 16 42 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 LS Contribution 329.43 15.07 4.96 4.96 Total: -1.00 -35.47 329.43 -7.37 -42.83 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -6.98 Total: -3.20 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: 0.31 Total: 2.40 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: -0.71 Total: -49.02 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.28 Total: -15.86 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.67 Total: 17.88 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -35.47 -7.37 -42.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081039408.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.755 kcal (2) G-P(sol) polarization free energy of solvation -35.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds