Wall clock time and date at job start Mon Mar 30 2020 00:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46907 * 109.46654 * 2 1 4 4 C 1.46904 * 110.99284 * 164.11382 * 3 2 1 5 5 C 1.50693 * 109.47480 * 293.94852 * 4 3 2 6 6 H 1.08002 * 120.00082 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00003 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99727 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00173 * 0.02562 * 7 5 4 10 10 H 1.48507 * 109.46859 * 90.00035 * 9 7 5 11 11 H 1.48496 * 109.47311 * 210.00079 * 9 7 5 12 12 H 1.48501 * 109.47024 * 330.00257 * 9 7 5 13 13 C 1.46897 * 110.99998 * 288.06203 * 3 2 1 14 14 C 1.50694 * 109.46824 * 163.79152 * 13 3 2 15 15 O 1.21282 * 120.00575 * 354.46268 * 14 13 3 16 16 N 1.34778 * 119.99725 * 174.46164 * 14 13 3 17 17 C 1.47152 * 120.98546 * 0.02562 * 16 14 13 18 18 C 1.53291 * 108.38827 * 129.43883 * 17 16 14 19 19 O 1.42958 * 109.22054 * 52.30708 * 18 17 16 20 20 C 1.42968 * 114.16648 * 297.41593 * 19 18 17 21 21 H 1.08997 * 109.51044 * 302.60613 * 20 19 18 22 22 C 1.52995 * 109.51177 * 182.50685 * 20 19 18 23 23 C 1.47158 * 120.98453 * 179.71926 * 16 14 13 24 24 H 1.09002 * 109.46967 * 305.46757 * 1 2 3 25 25 H 1.08993 * 109.47467 * 65.47180 * 1 2 3 26 26 H 1.09003 * 109.46872 * 185.47447 * 1 2 3 27 27 H 1.08992 * 109.47331 * 239.99686 * 2 1 3 28 28 H 1.09002 * 109.47144 * 119.99470 * 2 1 3 29 29 H 1.09005 * 109.47473 * 53.95422 * 4 3 2 30 30 H 1.09006 * 109.46762 * 173.94892 * 4 3 2 31 31 H 0.97005 * 120.00035 * 180.02562 * 8 7 5 32 32 H 1.08991 * 109.47570 * 283.80072 * 13 3 2 33 33 H 1.09001 * 109.46745 * 43.79565 * 13 3 2 34 34 H 1.08999 * 109.67868 * 249.16785 * 17 16 14 35 35 H 1.09006 * 109.67782 * 9.67460 * 17 16 14 36 36 H 1.09003 * 109.51285 * 172.22759 * 18 17 16 37 37 H 1.08994 * 109.51707 * 292.32787 * 18 17 16 38 38 H 1.08998 * 109.47582 * 60.00289 * 22 20 19 39 39 H 1.09003 * 109.47024 * 180.02562 * 22 20 19 40 40 H 1.08999 * 109.47634 * 299.99667 * 22 20 19 41 41 H 1.09007 * 109.67770 * 350.28517 * 23 16 14 42 42 H 1.08999 * 109.68145 * 110.83087 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4387 1.4417 0.3754 5 6 3.5969 1.0056 1.8092 6 1 2.7299 0.7150 2.3840 7 6 4.8483 0.9776 2.3872 8 7 4.9864 0.5965 3.6383 9 14 6.3477 1.4809 1.3933 10 1 6.5799 2.9391 1.5516 11 1 7.5365 0.7348 1.8784 12 1 6.1187 1.1689 -0.0404 13 6 1.7941 2.0231 -1.3038 14 6 1.9289 3.5173 -1.1618 15 8 2.0874 4.0105 -0.0652 16 7 1.8734 4.3057 -2.2535 17 6 1.6813 3.7305 -3.5943 18 6 0.5329 4.4783 -4.2813 19 8 0.7858 5.8842 -4.2239 20 6 0.8385 6.4157 -2.8977 21 1 -0.0974 6.2010 -2.3820 22 6 1.0508 7.9295 -2.9621 23 6 1.9964 5.7676 -2.1393 24 1 -0.3633 0.5963 0.8370 25 1 -0.3634 0.4266 -0.9348 26 1 -0.3633 -1.0230 0.0980 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 4.0125 0.7781 -0.2716 30 1 3.8036 2.4628 0.2638 31 1 5.8668 0.5772 4.0452 32 1 2.5309 1.6581 -2.0193 33 1 0.7923 1.7808 -1.6585 34 1 2.5950 3.8455 -4.1774 35 1 1.4318 2.6730 -3.5078 36 1 0.4644 4.1629 -5.3224 37 1 -0.4039 4.2550 -3.7708 38 1 0.2251 8.3895 -3.5049 39 1 1.0913 8.3340 -1.9507 40 1 1.9877 8.1436 -3.4763 41 1 1.9547 6.0586 -1.0896 42 1 2.9424 6.0915 -2.5732 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081039408.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:10 Heat of formation + Delta-G solvation = -90.763478 kcal Electronic energy + Delta-G solvation = -21872.177645 eV Core-core repulsion = 18658.800776 eV Total energy + Delta-G solvation = -3213.376869 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.44615 -39.67710 -38.05738 -35.81633 -34.74662 -34.01252 -31.91098 -30.66747 -29.70186 -28.10375 -26.15764 -24.37114 -23.95415 -22.53320 -21.66033 -20.11983 -19.03552 -18.38994 -17.67315 -17.10358 -17.00106 -16.38161 -16.13245 -15.88314 -15.68696 -15.45131 -15.12717 -14.61391 -14.50322 -14.25328 -14.12766 -13.72391 -13.29655 -13.14838 -13.00060 -12.90698 -12.68285 -12.61017 -12.48625 -12.21697 -12.17466 -11.88733 -11.72688 -11.67660 -11.43152 -11.16519 -10.82487 -10.69323 -9.59367 -9.01524 -8.30297 -6.31461 1.26860 1.30612 1.39145 1.62314 1.79101 2.30575 2.74168 3.02671 3.16644 3.54672 3.67940 3.96766 4.02050 4.10268 4.12142 4.18227 4.26341 4.33917 4.39329 4.46835 4.51012 4.67664 4.69159 4.74554 4.82807 4.86015 4.89597 4.91869 4.98511 5.05499 5.23405 5.27447 5.41660 5.42616 5.55474 5.93174 6.14313 6.23600 6.40339 6.61514 6.72794 7.22757 7.30402 8.86809 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.020419 B = 0.005276 C = 0.004608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.910055 B = 5305.496901 C = 6075.299921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.056 3.944 3 N -0.537 5.537 4 C 0.180 3.820 5 C -0.508 4.508 6 H 0.037 0.963 7 C 0.008 3.992 8 N -0.948 5.948 9 Si 0.943 3.057 10 H -0.277 1.277 11 H -0.273 1.273 12 H -0.249 1.249 13 C 0.039 3.961 14 C 0.507 3.493 15 O -0.561 6.561 16 N -0.623 5.623 17 C 0.066 3.934 18 C 0.048 3.952 19 O -0.388 6.388 20 C 0.082 3.918 21 H 0.057 0.943 22 C -0.140 4.140 23 C 0.080 3.920 24 H 0.040 0.960 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.045 0.955 28 H 0.054 0.946 29 H -0.010 1.010 30 H 0.014 0.986 31 H 0.267 0.733 32 H 0.075 0.925 33 H 0.132 0.868 34 H 0.085 0.915 35 H 0.115 0.885 36 H 0.137 0.863 37 H 0.059 0.941 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.818 7.703 -22.316 25.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.072 4.072 3 N -0.261 5.261 4 C 0.053 3.947 5 C -0.547 4.547 6 H 0.055 0.945 7 C -0.189 4.189 8 N -0.589 5.589 9 Si 0.767 3.233 10 H -0.203 1.203 11 H -0.199 1.199 12 H -0.173 1.173 13 C -0.092 4.092 14 C 0.296 3.704 15 O -0.437 6.437 16 N -0.360 5.360 17 C -0.056 4.056 18 C -0.029 4.029 19 O -0.307 6.307 20 C 0.023 3.977 21 H 0.075 0.925 22 C -0.197 4.197 23 C -0.043 4.043 24 H 0.059 0.941 25 H 0.090 0.910 26 H 0.094 0.906 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.008 0.992 30 H 0.032 0.968 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.150 0.850 34 H 0.104 0.896 35 H 0.133 0.867 36 H 0.155 0.845 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.847 8.282 -21.394 24.966 hybrid contribution 1.381 -0.398 0.211 1.453 sum -8.465 7.885 -21.183 24.136 Atomic orbital electron populations 1.21733 0.93319 1.02185 1.01957 1.22048 0.96798 0.87623 1.00710 1.61499 1.19572 1.18255 1.26820 1.19851 0.85521 0.94803 0.94568 1.21217 0.93485 1.43196 0.96754 0.94463 1.25788 1.02137 0.95037 0.95927 1.70044 1.24560 1.50103 1.14168 0.85781 0.78890 0.78484 0.80143 1.20323 1.19855 1.17312 1.22097 1.04693 0.90158 0.92277 1.21217 0.75401 0.90306 0.83465 1.90736 1.48943 1.76331 1.27722 1.48321 1.73294 1.06852 1.07504 1.22749 1.00928 1.00144 0.81731 1.23162 0.96083 0.80203 1.03462 1.87942 1.92751 1.23346 1.26700 1.22347 0.96352 0.95604 0.83388 0.92455 1.21728 1.03620 0.90867 1.03492 1.22249 1.00009 0.79910 1.02127 0.94113 0.91016 0.90613 0.93692 0.92785 0.99203 0.96807 0.92453 0.90740 0.85001 0.89640 0.86705 0.84514 0.92271 0.90476 0.90107 0.91288 0.90444 0.90539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.80 9.88 71.98 0.71 -3.09 16 2 C 0.06 2.04 5.53 86.30 0.48 2.52 16 3 N -0.54 -22.98 4.04 -905.37 -3.66 -26.64 16 4 C 0.18 9.25 3.43 85.55 0.29 9.55 16 5 C -0.51 -31.35 8.84 25.60 0.23 -31.12 16 6 H 0.04 2.55 7.50 -2.91 -0.02 2.53 16 7 C 0.01 0.50 5.47 84.65 0.46 0.96 16 8 N -0.95 -61.90 13.96 21.45 0.30 -61.60 16 9 Si 0.94 46.99 27.47 68.60 1.88 48.87 16 10 H -0.28 -13.82 7.11 99.48 0.71 -13.11 16 11 H -0.27 -12.94 7.11 99.48 0.71 -12.24 16 12 H -0.25 -11.46 6.54 99.48 0.65 -10.81 16 13 C 0.04 1.21 3.68 85.56 0.32 1.52 16 14 C 0.51 18.04 7.23 87.65 0.63 18.67 16 15 O -0.56 -26.69 14.69 -3.04 -0.04 -26.74 16 16 N -0.62 -16.42 3.03 -818.21 -2.48 -18.90 16 17 C 0.07 1.08 6.50 86.35 0.56 1.64 16 18 C 0.05 0.65 6.98 72.08 0.50 1.15 16 19 O -0.39 -7.30 10.39 -148.98 -1.55 -8.85 16 20 C 0.08 1.60 3.38 30.54 0.10 1.71 16 21 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 22 C -0.14 -2.12 9.57 71.98 0.69 -1.43 16 23 C 0.08 2.00 5.90 86.20 0.51 2.51 16 24 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.07 1.57 6.73 -2.39 -0.02 1.56 16 26 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.04 1.41 8.05 -2.39 -0.02 1.39 16 28 H 0.05 2.42 6.59 -2.39 -0.02 2.40 16 29 H -0.01 -0.47 7.18 -2.38 -0.02 -0.49 16 30 H 0.01 0.76 5.99 -2.38 -0.01 0.75 16 31 H 0.27 16.17 8.31 -92.70 -0.77 15.40 16 32 H 0.07 2.02 7.65 -2.39 -0.02 2.00 16 33 H 0.13 3.06 6.14 -2.39 -0.01 3.05 16 34 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.11 1.39 6.08 -2.38 -0.01 1.38 16 36 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.08 2.33 7.08 -2.38 -0.02 2.31 16 42 H 0.08 1.80 8.13 -2.39 -0.02 1.78 16 Total: -1.00 -81.86 329.43 0.87 -80.99 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: 0.93 Total: 8.26 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: 5.49 Total: 4.59 kcal Atomic # 7 Polarization: -101.30 SS G_CDS: -5.84 Total: -107.13 kcal Atomic # 8 Polarization: -33.99 SS G_CDS: -1.59 Total: -35.59 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 1.88 Total: 48.87 kcal Total: -81.86 0.87 -80.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081039408.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.773 kcal (2) G-P(sol) polarization free energy of solvation -81.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds