Wall clock time and date at job start Mon Mar 30 2020 00:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46901 * 109.46913 * 2 1 4 4 C 1.46899 * 111.00187 * 296.65353 * 3 2 1 5 5 C 1.50705 * 109.47012 * 288.57547 * 4 3 2 6 6 H 1.07999 * 119.99792 * 1.03301 * 5 4 3 7 7 C 1.37868 * 120.00145 * 181.03291 * 5 4 3 8 8 N 1.31515 * 120.00588 * 179.97438 * 7 5 4 9 9 Si 1.86806 * 119.99843 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46914 * 90.00186 * 9 7 5 11 11 H 1.48499 * 109.47210 * 209.99926 * 9 7 5 12 12 H 1.48496 * 109.47345 * 330.00200 * 9 7 5 13 13 C 1.46903 * 110.99996 * 60.60976 * 3 2 1 14 14 C 1.50697 * 109.47413 * 66.04272 * 13 3 2 15 15 O 1.21278 * 119.99647 * 0.02562 * 14 13 3 16 16 N 1.34780 * 119.99996 * 179.97438 * 14 13 3 17 17 C 1.47145 * 120.98229 * 0.02562 * 16 14 13 18 18 C 1.53292 * 108.38445 * 230.55482 * 17 16 14 19 19 O 1.42956 * 109.22422 * 307.69831 * 18 17 16 20 20 C 1.42959 * 114.16626 * 62.57826 * 19 18 17 21 21 H 1.09002 * 109.51436 * 57.34520 * 20 19 18 22 22 C 1.53004 * 109.51451 * 177.44491 * 20 19 18 23 23 C 1.47148 * 120.97832 * 180.02562 * 16 14 13 24 24 H 1.08999 * 109.47136 * 58.24136 * 1 2 3 25 25 H 1.08999 * 109.47485 * 178.24334 * 1 2 3 26 26 H 1.08995 * 109.47405 * 298.24250 * 1 2 3 27 27 H 1.08991 * 109.47323 * 239.99981 * 2 1 3 28 28 H 1.09005 * 109.47088 * 119.99633 * 2 1 3 29 29 H 1.09002 * 109.46894 * 48.57198 * 4 3 2 30 30 H 1.08998 * 109.47112 * 168.57433 * 4 3 2 31 31 H 0.97000 * 120.00623 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.47142 * 306.04118 * 13 3 2 33 33 H 1.09004 * 109.46901 * 186.04681 * 13 3 2 34 34 H 1.08995 * 109.68336 * 110.83204 * 17 16 14 35 35 H 1.09003 * 109.68183 * 350.27619 * 17 16 14 36 36 H 1.09004 * 109.51495 * 187.77410 * 18 17 16 37 37 H 1.09007 * 109.51542 * 67.62224 * 18 17 16 38 38 H 1.09002 * 109.47071 * 59.89910 * 22 20 19 39 39 H 1.08997 * 109.47160 * 179.89705 * 22 20 19 40 40 H 1.09000 * 109.47036 * 299.89957 * 22 20 19 41 41 H 1.08997 * 109.68744 * 9.72405 * 23 16 14 42 42 H 1.09000 * 109.68439 * 249.16375 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6151 2.0864 -1.2257 5 6 2.4022 1.5510 -2.3940 6 1 3.1181 0.7564 -2.2440 7 6 2.2083 2.0754 -3.6542 8 7 2.8955 1.6085 -4.6737 9 14 0.9695 3.4492 -3.9137 10 1 1.6426 4.7617 -3.7419 11 1 0.4079 3.3568 -5.2853 12 1 -0.1268 3.3214 -2.9203 13 6 1.5605 2.1057 1.1949 14 6 2.1949 1.5011 2.4209 15 8 2.9550 0.5626 2.3101 16 7 1.9183 2.0041 3.6404 17 6 0.9998 3.1425 3.7997 18 6 1.6875 4.2004 4.6702 19 8 2.1544 3.5880 5.8746 20 6 3.1397 2.5725 5.6709 21 1 3.9890 2.9921 5.1317 22 6 3.6086 2.0363 7.0251 23 6 2.5261 1.4308 4.8517 24 1 -0.3633 0.5409 -0.8738 25 1 -0.3634 -1.0272 -0.0315 26 1 -0.3634 0.4863 0.9053 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 0.5511 1.9274 -1.4009 30 1 1.8096 3.1532 -1.1148 31 1 2.7589 1.9772 -5.5604 32 1 0.4759 2.0285 1.2715 33 1 1.8455 3.1550 1.1182 34 1 0.0821 2.8088 4.2839 35 1 0.7670 3.5659 2.8227 36 1 0.9760 4.9892 4.9149 37 1 2.5315 4.6261 4.1274 38 1 2.7589 1.6168 7.5637 39 1 4.3585 1.2608 6.8689 40 1 4.0424 2.8493 7.6073 41 1 3.3040 0.7207 4.5714 42 1 1.7618 0.9250 5.4418 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081039410.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:13 Heat of formation + Delta-G solvation = -60.633678 kcal Electronic energy + Delta-G solvation = -21804.265666 eV Core-core repulsion = 18592.195323 eV Total energy + Delta-G solvation = -3212.070343 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.43277 -38.68140 -36.67908 -34.78918 -33.25658 -32.50242 -29.98039 -29.01879 -28.92298 -26.77686 -24.83538 -23.61345 -22.85267 -21.48613 -19.89366 -18.77342 -17.17087 -16.86585 -16.69017 -15.97146 -15.87382 -15.30291 -15.12706 -14.66419 -14.48202 -14.16197 -13.64394 -13.35845 -13.06319 -12.88394 -12.54083 -12.49013 -12.21828 -12.14058 -11.81036 -11.65749 -11.48399 -11.44525 -11.01781 -10.90140 -10.67634 -10.56491 -10.31693 -10.13804 -9.91753 -9.39157 -9.19172 -8.61079 -8.55780 -7.31913 -6.03250 -4.00084 2.79125 2.83644 3.26525 3.33827 3.34539 3.43637 4.39708 4.41285 4.53830 4.72046 4.76631 4.80647 4.89123 4.97490 5.07249 5.27790 5.30439 5.32941 5.46379 5.49926 5.54955 5.55958 5.60690 5.70546 5.76666 5.85634 5.92798 6.04433 6.28572 6.41677 6.45824 6.82301 6.87140 6.92666 7.06529 7.31049 7.59829 7.89286 8.00035 8.38912 8.67440 9.08472 9.57706 11.10137 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.029006 B = 0.004359 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.097182 B = 6421.550804 C = 6751.951263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.053 3.947 3 N -0.507 5.507 4 C 0.159 3.841 5 C -0.504 4.504 6 H 0.082 0.918 7 C 0.068 3.932 8 N -0.900 5.900 9 Si 0.873 3.127 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.269 1.269 13 C 0.032 3.968 14 C 0.520 3.480 15 O -0.512 6.512 16 N -0.627 5.627 17 C 0.073 3.927 18 C 0.048 3.952 19 O -0.379 6.379 20 C 0.073 3.927 21 H 0.064 0.936 22 C -0.143 4.143 23 C 0.085 3.915 24 H 0.063 0.937 25 H 0.053 0.947 26 H 0.039 0.961 27 H 0.086 0.914 28 H 0.075 0.925 29 H -0.002 1.002 30 H 0.021 0.979 31 H 0.263 0.737 32 H 0.057 0.943 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.101 0.899 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.141 4.215 21.478 22.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.075 4.075 3 N -0.230 5.230 4 C 0.033 3.967 5 C -0.542 4.542 6 H 0.100 0.900 7 C -0.133 4.133 8 N -0.539 5.539 9 Si 0.701 3.299 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.194 1.194 13 C -0.100 4.100 14 C 0.309 3.691 15 O -0.385 6.385 16 N -0.365 5.365 17 C -0.050 4.050 18 C -0.030 4.030 19 O -0.298 6.298 20 C 0.014 3.986 21 H 0.082 0.918 22 C -0.200 4.200 23 C -0.038 4.038 24 H 0.082 0.918 25 H 0.072 0.928 26 H 0.058 0.942 27 H 0.104 0.896 28 H 0.094 0.906 29 H 0.016 0.984 30 H 0.039 0.961 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.113 0.887 34 H 0.094 0.906 35 H 0.115 0.885 36 H 0.124 0.876 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.119 0.881 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.231 3.741 21.359 22.093 hybrid contribution -1.582 0.896 -0.597 1.913 sum -5.812 4.637 20.761 22.053 Atomic orbital electron populations 1.22435 0.99947 1.01494 1.01047 1.22184 0.91219 0.90614 1.03494 1.61941 1.58849 1.01962 1.00258 1.20289 0.94895 0.93754 0.87780 1.21003 1.22587 1.20833 0.89819 0.90023 1.24887 0.95835 0.96668 0.95955 1.69891 1.41346 1.42763 0.99917 0.86897 0.82261 0.83149 0.77624 1.20196 1.21198 1.19357 1.22049 0.97842 0.99400 0.90695 1.20953 0.81285 0.83227 0.83649 1.90652 1.35030 1.27540 1.85312 1.48246 1.47560 1.34347 1.06323 1.22413 0.93120 0.87567 1.01938 1.22972 0.98974 0.94660 0.86348 1.87939 1.58671 1.53148 1.30069 1.22516 0.90647 0.88348 0.97060 0.91796 1.21722 1.01705 1.01448 0.95139 1.22248 0.99271 0.96493 0.85768 0.91786 0.92834 0.94154 0.89558 0.90633 0.98439 0.96145 0.92685 0.92502 0.88702 0.90626 0.88539 0.87601 0.92394 0.91615 0.90642 0.91491 0.88097 0.91098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.32 9.26 37.16 0.34 -2.98 16 2 C 0.05 1.08 5.58 -3.82 -0.02 1.06 16 3 N -0.51 -10.93 4.40 -237.51 -1.04 -11.97 16 4 C 0.16 3.79 3.67 -4.97 -0.02 3.77 16 5 C -0.50 -14.42 9.11 -34.44 -0.31 -14.74 16 6 H 0.08 2.60 7.70 -52.49 -0.40 2.19 16 7 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 8 N -0.90 -27.70 13.96 55.43 0.77 -26.93 16 9 Si 0.87 21.16 27.45 -169.99 -4.67 16.50 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.18 6.57 56.52 0.37 -5.81 16 13 C 0.03 0.53 3.58 -4.98 -0.02 0.51 16 14 C 0.52 8.60 7.43 -10.99 -0.08 8.52 16 15 O -0.51 -10.33 13.78 5.56 0.08 -10.25 16 16 N -0.63 -8.01 3.02 -172.27 -0.52 -8.53 16 17 C 0.07 0.69 6.54 -3.54 -0.02 0.67 16 18 C 0.05 0.42 6.98 37.31 0.26 0.68 16 19 O -0.38 -3.97 10.38 -35.23 -0.37 -4.33 16 20 C 0.07 0.72 3.40 -26.56 -0.09 0.63 16 21 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 22 C -0.14 -1.08 9.57 37.16 0.36 -0.73 16 23 C 0.09 0.97 5.93 -3.52 -0.02 0.95 16 24 H 0.06 1.21 6.18 -51.93 -0.32 0.89 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.04 0.63 6.38 -51.93 -0.33 0.30 16 27 H 0.09 1.97 7.15 -51.93 -0.37 1.60 16 28 H 0.08 1.54 5.87 -51.93 -0.30 1.24 16 29 H 0.00 -0.04 5.01 -51.93 -0.26 -0.30 16 30 H 0.02 0.48 7.19 -51.93 -0.37 0.11 16 31 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 32 H 0.06 0.86 5.93 -51.93 -0.31 0.55 16 33 H 0.09 1.45 7.38 -51.93 -0.38 1.07 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.10 0.83 6.05 -51.93 -0.31 0.51 16 36 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.10 1.27 7.08 -51.93 -0.37 0.91 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 323.80 15.07 4.88 4.88 Total: -1.00 -33.60 323.80 -7.30 -40.90 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -6.71 Total: -0.48 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: 0.28 Total: 0.21 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: -0.79 Total: -47.43 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -0.29 Total: -14.59 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.67 Total: 16.50 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.60 -7.30 -40.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081039410.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.731 kcal (2) G-P(sol) polarization free energy of solvation -33.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds