Wall clock time and date at job start Mon Mar 30 2020 00:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46901 * 109.46913 * 2 1 4 4 C 1.46899 * 111.00187 * 296.65353 * 3 2 1 5 5 C 1.50705 * 109.47012 * 288.57547 * 4 3 2 6 6 H 1.07999 * 119.99792 * 1.03301 * 5 4 3 7 7 C 1.37868 * 120.00145 * 181.03291 * 5 4 3 8 8 N 1.31515 * 120.00588 * 179.97438 * 7 5 4 9 9 Si 1.86806 * 119.99843 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46914 * 90.00186 * 9 7 5 11 11 H 1.48499 * 109.47210 * 209.99926 * 9 7 5 12 12 H 1.48496 * 109.47345 * 330.00200 * 9 7 5 13 13 C 1.46903 * 110.99996 * 60.60976 * 3 2 1 14 14 C 1.50697 * 109.47413 * 66.04272 * 13 3 2 15 15 O 1.21278 * 119.99647 * 0.02562 * 14 13 3 16 16 N 1.34780 * 119.99996 * 179.97438 * 14 13 3 17 17 C 1.47145 * 120.98229 * 0.02562 * 16 14 13 18 18 C 1.53292 * 108.38445 * 230.55482 * 17 16 14 19 19 O 1.42956 * 109.22422 * 307.69831 * 18 17 16 20 20 C 1.42959 * 114.16626 * 62.57826 * 19 18 17 21 21 H 1.09002 * 109.51436 * 57.34520 * 20 19 18 22 22 C 1.53004 * 109.51451 * 177.44491 * 20 19 18 23 23 C 1.47148 * 120.97832 * 180.02562 * 16 14 13 24 24 H 1.08999 * 109.47136 * 58.24136 * 1 2 3 25 25 H 1.08999 * 109.47485 * 178.24334 * 1 2 3 26 26 H 1.08995 * 109.47405 * 298.24250 * 1 2 3 27 27 H 1.08991 * 109.47323 * 239.99981 * 2 1 3 28 28 H 1.09005 * 109.47088 * 119.99633 * 2 1 3 29 29 H 1.09002 * 109.46894 * 48.57198 * 4 3 2 30 30 H 1.08998 * 109.47112 * 168.57433 * 4 3 2 31 31 H 0.97000 * 120.00623 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.47142 * 306.04118 * 13 3 2 33 33 H 1.09004 * 109.46901 * 186.04681 * 13 3 2 34 34 H 1.08995 * 109.68336 * 110.83204 * 17 16 14 35 35 H 1.09003 * 109.68183 * 350.27619 * 17 16 14 36 36 H 1.09004 * 109.51495 * 187.77410 * 18 17 16 37 37 H 1.09007 * 109.51542 * 67.62224 * 18 17 16 38 38 H 1.09002 * 109.47071 * 59.89910 * 22 20 19 39 39 H 1.08997 * 109.47160 * 179.89705 * 22 20 19 40 40 H 1.09000 * 109.47036 * 299.89957 * 22 20 19 41 41 H 1.08997 * 109.68744 * 9.72405 * 23 16 14 42 42 H 1.09000 * 109.68439 * 249.16375 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6151 2.0864 -1.2257 5 6 2.4022 1.5510 -2.3940 6 1 3.1181 0.7564 -2.2440 7 6 2.2083 2.0754 -3.6542 8 7 2.8955 1.6085 -4.6737 9 14 0.9695 3.4492 -3.9137 10 1 1.6426 4.7617 -3.7419 11 1 0.4079 3.3568 -5.2853 12 1 -0.1268 3.3214 -2.9203 13 6 1.5605 2.1057 1.1949 14 6 2.1949 1.5011 2.4209 15 8 2.9550 0.5626 2.3101 16 7 1.9183 2.0041 3.6404 17 6 0.9998 3.1425 3.7997 18 6 1.6875 4.2004 4.6702 19 8 2.1544 3.5880 5.8746 20 6 3.1397 2.5725 5.6709 21 1 3.9890 2.9921 5.1317 22 6 3.6086 2.0363 7.0251 23 6 2.5261 1.4308 4.8517 24 1 -0.3633 0.5409 -0.8738 25 1 -0.3634 -1.0272 -0.0315 26 1 -0.3634 0.4863 0.9053 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 0.5511 1.9274 -1.4009 30 1 1.8096 3.1532 -1.1148 31 1 2.7589 1.9772 -5.5604 32 1 0.4759 2.0285 1.2715 33 1 1.8455 3.1550 1.1182 34 1 0.0821 2.8088 4.2839 35 1 0.7670 3.5659 2.8227 36 1 0.9760 4.9892 4.9149 37 1 2.5315 4.6261 4.1274 38 1 2.7589 1.6168 7.5637 39 1 4.3585 1.2608 6.8689 40 1 4.0424 2.8493 7.6073 41 1 3.3040 0.7207 4.5714 42 1 1.7618 0.9250 5.4418 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081039410.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:12 Heat of formation + Delta-G solvation = -86.101025 kcal Electronic energy + Delta-G solvation = -21805.370013 eV Core-core repulsion = 18592.195323 eV Total energy + Delta-G solvation = -3213.174690 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.50513 -39.78393 -38.19470 -35.83491 -34.68568 -33.97926 -31.47542 -30.71028 -29.71298 -28.12529 -26.12494 -24.68652 -24.37915 -22.45027 -21.39681 -19.99052 -18.87321 -18.31781 -17.63758 -17.20717 -16.95282 -16.45565 -16.29123 -16.10793 -15.77173 -15.59757 -14.87776 -14.77240 -14.45535 -14.17894 -13.79304 -13.55139 -13.30660 -13.19330 -13.04692 -12.94126 -12.67261 -12.65449 -12.45715 -12.35824 -12.17578 -11.91151 -11.72393 -11.55737 -11.48103 -11.17281 -10.74924 -10.65125 -9.59772 -8.92909 -8.24803 -6.28773 1.37062 1.40086 1.50301 1.57247 1.77950 2.37446 2.74010 3.07867 3.21892 3.52374 3.67693 3.96794 4.01776 4.10627 4.15385 4.17296 4.21731 4.32372 4.40516 4.46399 4.52024 4.57754 4.67668 4.70696 4.74626 4.85946 4.89512 4.90596 4.99814 5.06853 5.20254 5.24241 5.38213 5.44015 5.56122 5.96382 6.13966 6.22903 6.36424 6.66850 6.77511 7.16745 7.34114 8.92764 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.029006 B = 0.004359 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.097182 B = 6421.550804 C = 6751.951263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.058 3.942 3 N -0.536 5.536 4 C 0.171 3.829 5 C -0.516 4.516 6 H 0.025 0.975 7 C 0.003 3.997 8 N -0.954 5.954 9 Si 0.953 3.047 10 H -0.263 1.263 11 H -0.285 1.285 12 H -0.241 1.241 13 C 0.033 3.967 14 C 0.519 3.481 15 O -0.562 6.562 16 N -0.620 5.620 17 C 0.067 3.933 18 C 0.046 3.954 19 O -0.388 6.388 20 C 0.076 3.924 21 H 0.052 0.948 22 C -0.139 4.139 23 C 0.083 3.917 24 H 0.051 0.949 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.044 0.956 28 H 0.073 0.927 29 H 0.009 0.991 30 H 0.034 0.966 31 H 0.266 0.734 32 H 0.085 0.915 33 H 0.114 0.886 34 H 0.094 0.906 35 H 0.110 0.890 36 H 0.136 0.864 37 H 0.052 0.948 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.891 6.623 23.575 25.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.070 4.070 3 N -0.260 5.260 4 C 0.044 3.956 5 C -0.554 4.554 6 H 0.043 0.957 7 C -0.193 4.193 8 N -0.595 5.595 9 Si 0.776 3.224 10 H -0.188 1.188 11 H -0.211 1.211 12 H -0.164 1.164 13 C -0.098 4.098 14 C 0.307 3.693 15 O -0.439 6.439 16 N -0.356 5.356 17 C -0.055 4.055 18 C -0.031 4.031 19 O -0.307 6.307 20 C 0.018 3.982 21 H 0.070 0.930 22 C -0.196 4.196 23 C -0.039 4.039 24 H 0.070 0.930 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.063 0.937 28 H 0.091 0.909 29 H 0.027 0.973 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.103 0.897 33 H 0.132 0.868 34 H 0.112 0.888 35 H 0.128 0.872 36 H 0.154 0.846 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.100 0.900 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.005 6.174 23.524 25.309 hybrid contribution -0.640 0.083 -1.171 1.337 sum -7.645 6.258 22.352 24.438 Atomic orbital electron populations 1.22302 0.97034 1.02786 1.01610 1.22007 0.93559 0.90112 1.01317 1.61702 1.60511 1.02519 1.01258 1.20032 0.94335 0.94104 0.87085 1.21248 1.22147 1.19657 0.92370 0.95673 1.25940 0.98283 0.99882 0.95237 1.70080 1.43748 1.44950 1.00674 0.85635 0.79695 0.79035 0.78075 1.18821 1.21109 1.16374 1.22122 0.99367 0.99620 0.88655 1.20926 0.80832 0.82769 0.84725 1.90640 1.37327 1.29826 1.86143 1.48280 1.47243 1.34590 1.05464 1.22734 0.93034 0.86571 1.03192 1.23153 0.99417 0.94878 0.85682 1.87941 1.58607 1.53092 1.31041 1.22496 0.90112 0.87744 0.97849 0.92964 1.21724 1.02158 1.01835 0.93904 1.22357 0.99243 0.96931 0.85414 0.93019 0.91227 0.91554 0.93692 0.90852 0.97309 0.94770 0.92508 0.89706 0.86831 0.88811 0.87189 0.84630 0.92914 0.90977 0.89902 0.90886 0.89972 0.89741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.91 9.26 71.98 0.67 -5.24 16 2 C 0.06 2.42 5.58 86.30 0.48 2.90 16 3 N -0.54 -23.01 4.40 -905.35 -3.98 -27.00 16 4 C 0.17 8.00 3.67 85.56 0.31 8.31 16 5 C -0.52 -30.51 9.11 25.60 0.23 -30.27 16 6 H 0.02 1.71 7.70 -2.91 -0.02 1.69 16 7 C 0.00 0.18 5.47 84.65 0.46 0.64 16 8 N -0.95 -60.76 13.96 21.44 0.30 -60.47 16 9 Si 0.95 42.96 27.45 68.60 1.88 44.84 16 10 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 11 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.24 -9.69 6.57 99.48 0.65 -9.03 16 13 C 0.03 1.03 3.58 85.56 0.31 1.34 16 14 C 0.52 16.55 7.43 87.66 0.65 17.20 16 15 O -0.56 -23.07 13.78 -3.02 -0.04 -23.11 16 16 N -0.62 -14.55 3.02 -817.33 -2.47 -17.02 16 17 C 0.07 1.02 6.54 86.35 0.56 1.58 16 18 C 0.05 0.64 6.98 72.08 0.50 1.14 16 19 O -0.39 -7.04 10.38 -148.98 -1.55 -8.59 16 20 C 0.08 1.40 3.40 30.71 0.10 1.50 16 21 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 22 C -0.14 -1.86 9.57 71.98 0.69 -1.17 16 23 C 0.08 1.78 5.93 86.37 0.51 2.29 16 24 H 0.05 1.84 6.18 -2.39 -0.01 1.82 16 25 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.07 1.84 6.38 -2.39 -0.02 1.82 16 27 H 0.04 2.19 7.15 -2.39 -0.02 2.17 16 28 H 0.07 3.08 5.87 -2.38 -0.01 3.07 16 29 H 0.01 0.42 5.01 -2.39 -0.01 0.41 16 30 H 0.03 1.51 7.19 -2.39 -0.02 1.49 16 31 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 32 H 0.09 2.19 5.93 -2.39 -0.01 2.18 16 33 H 0.11 3.10 7.38 -2.38 -0.02 3.08 16 34 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.11 1.40 6.05 -2.39 -0.01 1.38 16 36 H 0.14 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.08 2.09 7.08 -2.39 -0.02 2.07 16 42 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -76.85 323.80 0.58 -76.27 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 0.95 Total: 14.85 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: 5.49 Total: 0.22 kcal Atomic # 7 Polarization: -98.33 SS G_CDS: -6.15 Total: -104.48 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -1.59 Total: -31.70 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 1.88 Total: 44.84 kcal Total: -76.85 0.58 -76.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081039410.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.832 kcal (2) G-P(sol) polarization free energy of solvation -76.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds