Wall clock time and date at job start Mon Mar 30 2020 01:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42895 * 109.46957 * 2 1 4 4 C 1.42905 * 113.99561 * 180.02562 * 3 2 1 5 5 C 1.53008 * 109.46973 * 179.97438 * 4 3 2 6 6 C 1.52993 * 109.46901 * 180.02562 * 5 4 3 7 7 C 1.50707 * 109.46827 * 179.97438 * 6 5 4 8 8 O 1.21275 * 120.00197 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99596 * 180.02562 * 7 6 5 10 10 C 1.46969 * 120.59184 * 179.97438 * 9 7 6 11 11 C 1.53365 * 108.63823 * 235.24762 * 10 9 7 12 12 N 1.46971 * 108.63406 * 310.57818 * 11 10 9 13 13 C 1.36933 * 120.58954 * 235.20080 * 12 11 10 14 14 H 1.08004 * 119.99676 * 151.84704 * 13 12 11 15 15 C 1.38804 * 120.00274 * 331.57456 * 13 12 11 16 16 N 1.31613 * 120.00257 * 342.82344 * 15 13 12 17 17 Si 1.86809 * 120.00042 * 162.81945 * 15 13 12 18 18 H 1.48504 * 109.46931 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46750 * 119.99895 * 17 15 13 20 20 H 1.48498 * 109.47076 * 239.99975 * 17 15 13 21 21 C 1.46964 * 118.81046 * 55.47559 * 12 11 10 22 22 C 1.46965 * 120.59893 * 0.02562 * 9 7 6 23 23 H 1.09000 * 109.47150 * 59.99770 * 1 2 3 24 24 H 1.09004 * 109.47343 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47163 * 300.00094 * 1 2 3 26 26 H 1.09000 * 109.46668 * 240.00027 * 2 1 3 27 27 H 1.09000 * 109.47150 * 120.00230 * 2 1 3 28 28 H 1.09005 * 109.46950 * 60.00344 * 4 3 2 29 29 H 1.08997 * 109.46898 * 299.99932 * 4 3 2 30 30 H 1.09000 * 109.47064 * 59.99677 * 5 4 3 31 31 H 1.09000 * 109.46630 * 300.00085 * 5 4 3 32 32 H 1.09008 * 109.47542 * 60.00199 * 6 5 4 33 33 H 1.08996 * 109.47528 * 300.00227 * 6 5 4 34 34 H 1.09001 * 109.60759 * 115.50025 * 10 9 7 35 35 H 1.08998 * 109.74755 * 355.07824 * 10 9 7 36 36 H 1.08993 * 109.61301 * 190.83327 * 11 10 9 37 37 H 1.09004 * 109.75220 * 70.40370 * 11 10 9 38 38 H 0.97004 * 120.00510 * 180.02562 * 16 15 13 39 39 H 1.08995 * 109.60931 * 64.27031 * 21 12 11 40 40 H 1.09004 * 109.60392 * 184.78099 * 21 12 11 41 41 H 1.09002 * 109.60509 * 244.49992 * 22 9 7 42 42 H 1.09000 * 109.60856 * 4.83277 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8255 2.9383 -0.0012 6 6 5.3506 3.0591 -0.0024 7 6 5.7392 4.5152 -0.0037 8 8 4.8809 5.3719 -0.0040 9 7 7.0408 4.8652 -0.0054 10 6 7.4345 6.2812 -0.0072 11 6 8.3626 6.5304 -1.2024 12 7 9.4135 5.5029 -1.2032 13 6 10.7358 5.8587 -1.2059 14 1 11.4723 5.2031 -0.7651 15 6 11.1304 7.0592 -1.7801 16 7 10.3231 7.6905 -2.6059 17 14 12.8073 7.7791 -1.3807 18 1 13.5180 6.8826 -0.4337 19 1 13.6007 7.9081 -2.6294 20 1 12.6366 9.1182 -0.7620 21 6 9.0198 4.0870 -1.2071 22 6 8.0917 3.8379 -0.0067 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 3.8333 0.9766 -0.8909 29 1 3.8340 0.9763 0.8892 30 1 3.4230 3.4222 0.8888 31 1 3.4223 3.4215 -0.8912 32 1 5.7528 2.5753 -0.8927 33 1 5.7542 2.5757 0.8872 34 1 7.9594 6.5160 0.9188 35 1 6.5483 6.9097 -0.0948 36 1 8.8161 7.5175 -1.1139 37 1 7.7928 6.4714 -2.1298 38 1 10.5989 8.5293 -3.0075 39 1 8.4938 3.8562 -2.1334 40 1 9.9075 3.4603 -1.1215 41 1 8.6635 3.8984 0.9193 42 1 7.6380 2.8505 -0.0926 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085683451.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:07 Heat of formation + Delta-G solvation = -66.888089 kcal Electronic energy + Delta-G solvation = -20914.564007 eV Core-core repulsion = 17702.222453 eV Total energy + Delta-G solvation = -3212.341554 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.67735 -38.25401 -36.83536 -33.96673 -33.82567 -31.35105 -31.17454 -30.26602 -27.47629 -26.24604 -23.65622 -23.03526 -22.89045 -21.77119 -20.29218 -18.53583 -17.26591 -16.72144 -16.61627 -16.09669 -15.45461 -15.21161 -14.82899 -14.41061 -14.27389 -13.68242 -13.54083 -13.28528 -13.12607 -12.99576 -12.83153 -12.22622 -12.05465 -11.73819 -11.65398 -11.61115 -11.22108 -11.08701 -10.88927 -10.83714 -10.72530 -10.56101 -10.25436 -9.98253 -9.84792 -9.78756 -9.33685 -8.60909 -8.23073 -6.72991 -5.86364 -3.32062 3.00759 3.25873 3.32854 3.40881 3.42717 3.66226 4.42513 4.71065 4.75502 4.88340 4.89203 5.04887 5.10142 5.16801 5.25419 5.30126 5.32784 5.37723 5.44460 5.58236 5.62203 5.73279 5.76369 5.82893 5.87462 6.07518 6.14821 6.24373 6.34295 6.38215 6.49746 6.68089 6.86919 7.03025 7.25737 7.54191 7.71073 7.93067 8.34638 8.59162 9.10324 9.73131 10.29899 11.20990 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.054027 B = 0.003067 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.133245 B = 9126.126341 C = 9351.779391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.389 6.389 4 C 0.063 3.937 5 C -0.102 4.102 6 C -0.135 4.135 7 C 0.508 3.492 8 O -0.555 6.555 9 N -0.598 5.598 10 C 0.087 3.913 11 C 0.158 3.842 12 N -0.592 5.592 13 C -0.257 4.257 14 H 0.068 0.932 15 C 0.003 3.997 16 N -0.900 5.900 17 Si 0.904 3.096 18 H -0.277 1.277 19 H -0.290 1.290 20 H -0.288 1.288 21 C 0.130 3.870 22 C 0.089 3.911 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.047 0.953 27 H 0.046 0.954 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.059 0.941 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.023 0.977 38 H 0.255 0.745 39 H 0.023 0.977 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.850 -14.632 5.927 19.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.309 6.309 4 C -0.013 4.013 5 C -0.140 4.140 6 C -0.175 4.175 7 C 0.296 3.704 8 O -0.434 6.434 9 N -0.330 5.330 10 C -0.036 4.036 11 C 0.032 3.968 12 N -0.315 5.315 13 C -0.387 4.387 14 H 0.086 0.914 15 C -0.196 4.196 16 N -0.544 5.544 17 Si 0.734 3.266 18 H -0.202 1.202 19 H -0.217 1.217 20 H -0.214 1.214 21 C 0.003 3.997 22 C -0.036 4.036 23 H 0.082 0.918 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.117 0.883 37 H 0.041 0.959 38 H 0.065 0.935 39 H 0.041 0.959 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.352 -13.856 5.831 19.457 hybrid contribution 1.204 0.100 0.076 1.211 sum -11.147 -13.756 5.907 18.665 Atomic orbital electron populations 1.21748 0.93834 1.02104 1.03235 1.22445 0.95594 0.84010 0.99959 1.87903 1.21363 1.26186 1.95413 1.22528 0.81057 0.97693 1.00049 1.21211 0.93713 0.94209 1.04866 1.21541 0.96952 0.94877 1.04180 1.20474 0.82348 0.90965 0.76594 1.90657 1.49137 1.52312 1.51314 1.48087 1.05006 1.08411 1.71543 1.22479 0.99529 0.80312 1.01317 1.21190 0.88064 0.95402 0.92177 1.44028 1.02698 0.98883 1.85843 1.19222 0.83544 1.04539 1.31368 0.91424 1.25102 0.97889 1.00100 0.96496 1.70028 1.36878 1.17814 1.29700 0.86203 0.83635 0.79046 0.77735 1.20198 1.21677 1.21440 1.21359 0.96099 0.88447 0.93820 1.22455 0.90026 0.89890 1.01262 0.91796 0.91212 0.91849 0.93467 0.93526 0.93262 0.93365 0.90454 0.90334 0.88871 0.89110 0.92275 0.90153 0.88283 0.95873 0.93467 0.95882 0.91487 0.91598 0.90901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.28 37.16 0.38 -0.72 16 2 C 0.06 0.48 6.66 37.16 0.25 0.73 16 3 O -0.39 -4.56 10.34 -35.23 -0.36 -4.93 16 4 C 0.06 0.65 5.94 37.16 0.22 0.87 16 5 C -0.10 -1.27 4.87 -26.73 -0.13 -1.40 16 6 C -0.14 -1.65 4.04 -27.88 -0.11 -1.76 16 7 C 0.51 8.78 7.70 -10.98 -0.08 8.70 16 8 O -0.56 -11.52 15.39 5.56 0.09 -11.43 16 9 N -0.60 -10.79 2.95 -172.24 -0.51 -11.30 16 10 C 0.09 1.77 6.59 -3.60 -0.02 1.75 16 11 C 0.16 3.78 5.51 -3.60 -0.02 3.76 16 12 N -0.59 -14.35 2.96 -171.80 -0.51 -14.86 16 13 C -0.26 -6.81 9.57 -15.06 -0.14 -6.95 16 14 H 0.07 1.74 7.89 -52.48 -0.41 1.33 16 15 C 0.00 0.09 4.91 -17.44 -0.09 0.00 16 16 N -0.90 -25.75 11.20 55.49 0.62 -25.13 16 17 Si 0.90 21.16 29.59 -169.99 -5.03 16.13 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 C 0.13 2.53 6.70 -3.39 -0.02 2.50 16 22 C 0.09 1.39 6.52 -3.39 -0.02 1.37 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 31 H 0.08 1.11 8.10 -51.93 -0.42 0.69 16 32 H 0.09 1.00 7.72 -51.92 -0.40 0.60 16 33 H 0.09 0.90 7.91 -51.93 -0.41 0.49 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.08 1.65 7.00 -51.93 -0.36 1.29 16 36 H 0.10 2.62 6.00 -51.93 -0.31 2.30 16 37 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 1.22 7.93 -51.93 -0.41 0.81 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.07 0.87 5.91 -51.93 -0.31 0.56 16 LS Contribution 337.48 15.07 5.09 5.09 Total: -1.00 -31.77 337.48 -7.66 -39.43 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -7.25 Total: -1.84 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: 0.20 Total: 8.85 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: -0.40 Total: -51.29 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.28 Total: -16.36 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.77 -7.66 -39.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085683451.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.461 kcal (2) G-P(sol) polarization free energy of solvation -31.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds