Wall clock time and date at job start Mon Mar 30 2020 01:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42895 * 109.46957 * 2 1 4 4 C 1.42905 * 113.99561 * 180.02562 * 3 2 1 5 5 C 1.53008 * 109.46973 * 179.97438 * 4 3 2 6 6 C 1.52993 * 109.46901 * 180.02562 * 5 4 3 7 7 C 1.50707 * 109.46827 * 179.97438 * 6 5 4 8 8 O 1.21275 * 120.00197 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99596 * 180.02562 * 7 6 5 10 10 C 1.46969 * 120.59184 * 179.97438 * 9 7 6 11 11 C 1.53365 * 108.63823 * 235.24762 * 10 9 7 12 12 N 1.46971 * 108.63406 * 310.57818 * 11 10 9 13 13 C 1.36933 * 120.58954 * 235.20080 * 12 11 10 14 14 H 1.08004 * 119.99676 * 151.84704 * 13 12 11 15 15 C 1.38804 * 120.00274 * 331.57456 * 13 12 11 16 16 N 1.31613 * 120.00257 * 342.82344 * 15 13 12 17 17 Si 1.86809 * 120.00042 * 162.81945 * 15 13 12 18 18 H 1.48504 * 109.46931 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46750 * 119.99895 * 17 15 13 20 20 H 1.48498 * 109.47076 * 239.99975 * 17 15 13 21 21 C 1.46964 * 118.81046 * 55.47559 * 12 11 10 22 22 C 1.46965 * 120.59893 * 0.02562 * 9 7 6 23 23 H 1.09000 * 109.47150 * 59.99770 * 1 2 3 24 24 H 1.09004 * 109.47343 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47163 * 300.00094 * 1 2 3 26 26 H 1.09000 * 109.46668 * 240.00027 * 2 1 3 27 27 H 1.09000 * 109.47150 * 120.00230 * 2 1 3 28 28 H 1.09005 * 109.46950 * 60.00344 * 4 3 2 29 29 H 1.08997 * 109.46898 * 299.99932 * 4 3 2 30 30 H 1.09000 * 109.47064 * 59.99677 * 5 4 3 31 31 H 1.09000 * 109.46630 * 300.00085 * 5 4 3 32 32 H 1.09008 * 109.47542 * 60.00199 * 6 5 4 33 33 H 1.08996 * 109.47528 * 300.00227 * 6 5 4 34 34 H 1.09001 * 109.60759 * 115.50025 * 10 9 7 35 35 H 1.08998 * 109.74755 * 355.07824 * 10 9 7 36 36 H 1.08993 * 109.61301 * 190.83327 * 11 10 9 37 37 H 1.09004 * 109.75220 * 70.40370 * 11 10 9 38 38 H 0.97004 * 120.00510 * 180.02562 * 16 15 13 39 39 H 1.08995 * 109.60931 * 64.27031 * 21 12 11 40 40 H 1.09004 * 109.60392 * 184.78099 * 21 12 11 41 41 H 1.09002 * 109.60509 * 244.49992 * 22 9 7 42 42 H 1.09000 * 109.60856 * 4.83277 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8255 2.9383 -0.0012 6 6 5.3506 3.0591 -0.0024 7 6 5.7392 4.5152 -0.0037 8 8 4.8809 5.3719 -0.0040 9 7 7.0408 4.8652 -0.0054 10 6 7.4345 6.2812 -0.0072 11 6 8.3626 6.5304 -1.2024 12 7 9.4135 5.5029 -1.2032 13 6 10.7358 5.8587 -1.2059 14 1 11.4723 5.2031 -0.7651 15 6 11.1304 7.0592 -1.7801 16 7 10.3231 7.6905 -2.6059 17 14 12.8073 7.7791 -1.3807 18 1 13.5180 6.8826 -0.4337 19 1 13.6007 7.9081 -2.6294 20 1 12.6366 9.1182 -0.7620 21 6 9.0198 4.0870 -1.2071 22 6 8.0917 3.8379 -0.0067 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 3.8333 0.9766 -0.8909 29 1 3.8340 0.9763 0.8892 30 1 3.4230 3.4222 0.8888 31 1 3.4223 3.4215 -0.8912 32 1 5.7528 2.5753 -0.8927 33 1 5.7542 2.5757 0.8872 34 1 7.9594 6.5160 0.9188 35 1 6.5483 6.9097 -0.0948 36 1 8.8161 7.5175 -1.1139 37 1 7.7928 6.4714 -2.1298 38 1 10.5989 8.5293 -3.0075 39 1 8.4938 3.8562 -2.1334 40 1 9.9075 3.4603 -1.1215 41 1 8.6635 3.8984 0.9193 42 1 7.6380 2.8505 -0.0926 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085683451.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:06 Heat of formation + Delta-G solvation = -87.519080 kcal Electronic energy + Delta-G solvation = -20915.458634 eV Core-core repulsion = 17702.222453 eV Total energy + Delta-G solvation = -3213.236181 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.08399 -39.05968 -38.43550 -35.63536 -34.87237 -33.05911 -32.27318 -31.62138 -28.96480 -27.55439 -25.38736 -24.42510 -23.64523 -22.93249 -21.80356 -20.02229 -18.78623 -17.88267 -17.47997 -17.39868 -16.73071 -16.64627 -16.48677 -15.50058 -15.43158 -15.30325 -15.09997 -14.96101 -14.42100 -14.14735 -13.58300 -13.46916 -13.35585 -13.17816 -12.78842 -12.56265 -12.52639 -12.45344 -12.37844 -12.24230 -12.01199 -11.87072 -11.82344 -11.74103 -11.65413 -10.77680 -10.62179 -10.49525 -9.80599 -8.66450 -7.88950 -5.37964 1.46848 1.49529 1.59559 1.67101 2.04232 2.50594 2.78947 3.26106 3.59124 3.60863 4.01095 4.09607 4.19738 4.20526 4.26186 4.35009 4.41524 4.47280 4.51848 4.52992 4.54780 4.57444 4.66774 4.70105 4.82020 4.87360 4.95649 5.04427 5.06975 5.15287 5.25109 5.26587 5.31271 5.46270 5.61142 5.68794 6.34537 6.35015 6.56016 7.08712 7.21982 7.78943 8.32159 9.16421 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.054027 B = 0.003067 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.133245 B = 9126.126341 C = 9351.779391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.049 3.951 3 O -0.420 6.420 4 C 0.066 3.934 5 C -0.098 4.098 6 C -0.123 4.123 7 C 0.502 3.498 8 O -0.598 6.598 9 N -0.604 5.604 10 C 0.102 3.898 11 C 0.170 3.830 12 N -0.610 5.610 13 C -0.259 4.259 14 H 0.077 0.923 15 C -0.054 4.054 16 N -0.939 5.939 17 Si 0.969 3.031 18 H -0.261 1.261 19 H -0.295 1.295 20 H -0.293 1.293 21 C 0.123 3.877 22 C 0.098 3.902 23 H 0.054 0.946 24 H 0.092 0.908 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.118 0.882 33 H 0.128 0.872 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.067 0.933 37 H -0.010 1.010 38 H 0.250 0.750 39 H 0.017 0.983 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.400 -17.805 7.327 22.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.027 4.027 3 O -0.341 6.341 4 C -0.010 4.010 5 C -0.137 4.137 6 C -0.163 4.163 7 C 0.292 3.708 8 O -0.480 6.480 9 N -0.336 5.336 10 C -0.023 4.023 11 C 0.043 3.957 12 N -0.334 5.334 13 C -0.389 4.389 14 H 0.095 0.905 15 C -0.249 4.249 16 N -0.585 5.585 17 Si 0.797 3.203 18 H -0.185 1.185 19 H -0.222 1.222 20 H -0.220 1.220 21 C -0.003 4.003 22 C -0.025 4.025 23 H 0.073 0.927 24 H 0.110 0.890 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.137 0.863 33 H 0.146 0.854 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.008 0.992 38 H 0.059 0.941 39 H 0.035 0.965 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.900 -17.094 7.252 22.054 hybrid contribution 1.002 1.035 -0.386 1.491 sum -10.898 -16.059 6.866 20.586 Atomic orbital electron populations 1.21789 0.93400 1.03342 1.02436 1.22663 0.96087 0.82776 1.01134 1.87868 1.22263 1.28291 1.95677 1.22521 0.80725 0.95847 1.01887 1.21128 0.93958 0.95862 1.02704 1.21571 0.96723 0.90930 1.07034 1.21460 0.81339 0.93010 0.74963 1.90643 1.50210 1.54168 1.52936 1.48198 1.06154 1.07580 1.71691 1.22040 0.98170 0.82532 0.99557 1.20859 0.88210 0.94356 0.92262 1.44294 1.02089 1.00967 1.86040 1.19611 0.84720 1.04501 1.30101 0.90488 1.25887 1.01329 1.00872 0.96844 1.70190 1.38823 1.18077 1.31381 0.85182 0.79722 0.78053 0.77309 1.18517 1.22190 1.22003 1.21612 0.97628 0.85734 0.95340 1.22513 0.89023 0.91397 0.99607 0.92712 0.88962 0.92541 0.92387 0.92118 0.91637 0.91108 0.92327 0.92997 0.86347 0.85378 0.91747 0.91155 0.91466 0.99152 0.94109 0.96530 0.89975 0.90614 0.85745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 10.28 71.98 0.74 -1.22 16 2 C 0.05 0.72 6.66 71.98 0.48 1.20 16 3 O -0.42 -9.13 10.34 -148.98 -1.54 -10.67 16 4 C 0.07 1.15 5.94 71.98 0.43 1.58 16 5 C -0.10 -2.26 4.87 30.59 0.15 -2.11 16 6 C -0.12 -2.53 4.04 29.85 0.12 -2.41 16 7 C 0.50 16.49 7.70 87.66 0.67 17.17 16 8 O -0.60 -24.97 15.39 -3.02 -0.05 -25.01 16 9 N -0.60 -20.73 2.95 -817.25 -2.41 -23.14 16 10 C 0.10 4.18 6.59 86.41 0.57 4.75 16 11 C 0.17 8.41 5.51 86.41 0.48 8.88 16 12 N -0.61 -29.51 2.96 -697.46 -2.06 -31.57 16 13 C -0.26 -13.63 9.57 84.03 0.80 -12.82 16 14 H 0.08 3.83 7.89 -2.91 -0.02 3.81 16 15 C -0.05 -2.96 4.91 84.86 0.42 -2.55 16 16 N -0.94 -55.52 11.20 21.65 0.24 -55.28 16 17 Si 0.97 43.89 29.59 68.60 2.03 45.92 16 18 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 19 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 20 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 21 C 0.12 4.49 6.70 86.55 0.58 5.07 16 22 C 0.10 2.71 6.52 86.55 0.56 3.27 16 23 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 25 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 1.55 8.10 -2.39 -0.02 1.53 16 31 H 0.05 1.45 8.10 -2.39 -0.02 1.43 16 32 H 0.12 1.93 7.72 -2.38 -0.02 1.92 16 33 H 0.13 1.78 7.91 -2.39 -0.02 1.76 16 34 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 35 H 0.07 3.00 7.00 -2.39 -0.02 2.99 16 36 H 0.07 3.74 6.00 -2.39 -0.01 3.72 16 37 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 38 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 39 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.08 2.74 7.93 -2.39 -0.02 2.72 16 41 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.12 2.20 5.91 -2.39 -0.01 2.19 16 Total: -1.00 -72.20 337.48 3.19 -69.01 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: 0.97 Total: 9.94 kcal Atomic # 6 Polarization: 14.80 SS G_CDS: 6.00 Total: 20.80 kcal Atomic # 7 Polarization: -105.76 SS G_CDS: -4.23 Total: -109.99 kcal Atomic # 8 Polarization: -34.10 SS G_CDS: -1.59 Total: -35.68 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -72.20 3.19 -69.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085683451.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.506 kcal (2) G-P(sol) polarization free energy of solvation -72.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds