Wall clock time and date at job start Mon Mar 30 2020 01:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42897 * 109.47511 * 2 1 4 4 C 1.42895 * 114.00471 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47518 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.50551 * 54.91512 * 5 4 3 7 7 C 1.53124 * 109.53093 * 294.81934 * 5 4 3 8 8 C 1.53126 * 109.15864 * 182.38243 * 7 5 4 9 9 C 1.53039 * 109.27449 * 57.65819 * 8 7 5 10 10 N 1.46847 * 109.52415 * 300.81595 * 9 8 7 11 11 C 1.46894 * 111.00301 * 185.84283 * 10 9 8 12 12 C 1.50697 * 109.47436 * 169.40141 * 11 10 9 13 13 O 1.21291 * 119.99911 * 353.73505 * 12 11 10 14 14 N 1.34775 * 120.00062 * 173.73091 * 12 11 10 15 15 C 1.37100 * 119.99889 * 179.97438 * 14 12 11 16 16 H 1.07995 * 120.00122 * 0.02562 * 15 14 12 17 17 C 1.38953 * 119.99491 * 179.72679 * 15 14 12 18 18 N 1.31411 * 120.00647 * 0.27531 * 17 15 14 19 19 Si 1.86804 * 119.99542 * 180.27752 * 17 15 14 20 20 H 1.48503 * 109.46957 * 90.00049 * 19 17 15 21 21 H 1.48499 * 109.47275 * 209.99683 * 19 17 15 22 22 H 1.48495 * 109.47460 * 329.99966 * 19 17 15 23 23 C 1.46848 * 111.19414 * 61.74398 * 10 9 8 24 24 H 1.09001 * 109.46711 * 299.99858 * 1 2 3 25 25 H 1.08998 * 109.47612 * 59.99628 * 1 2 3 26 26 H 1.08998 * 109.47084 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46711 * 240.00142 * 2 1 3 28 28 H 1.08998 * 109.47612 * 120.00372 * 2 1 3 29 29 H 1.09003 * 109.47502 * 59.99981 * 4 3 2 30 30 H 1.09008 * 109.47116 * 300.00038 * 4 3 2 31 31 H 1.08995 * 109.52484 * 302.29066 * 7 5 4 32 32 H 1.08999 * 109.52218 * 62.41915 * 7 5 4 33 33 H 1.09001 * 109.49736 * 177.59492 * 8 7 5 34 34 H 1.08997 * 109.50014 * 297.67653 * 8 7 5 35 35 H 1.08996 * 109.45862 * 180.80652 * 9 8 7 36 36 H 1.08992 * 109.46226 * 60.83478 * 9 8 7 37 37 H 1.09006 * 109.47265 * 49.39876 * 11 10 9 38 38 H 1.09005 * 109.47135 * 289.40115 * 11 10 9 39 39 H 0.97001 * 120.00088 * 0.02562 * 14 12 11 40 40 H 0.96996 * 119.99972 * 179.97438 * 18 17 15 41 41 H 1.09004 * 109.46482 * 58.27918 * 23 10 9 42 42 H 1.09002 * 109.45941 * 178.25120 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9383 0.0001 6 1 3.3491 3.4418 0.8414 7 6 3.3716 3.5899 -1.3091 8 6 3.8228 5.0531 -1.3251 9 6 5.3432 5.1148 -1.1615 10 7 5.7266 4.4794 0.1057 11 6 7.1638 4.6421 0.3624 12 6 7.4734 4.2147 1.7740 13 8 6.5718 3.9224 2.5307 14 7 8.7523 4.1571 2.1954 15 6 9.0340 3.7688 3.4797 16 1 8.2311 3.5086 4.1536 17 6 10.3528 3.7040 3.9125 18 7 11.3298 4.0202 3.0924 19 14 10.7370 3.1675 5.6600 20 1 10.9130 1.6934 5.6978 21 1 11.9867 3.8269 6.1169 22 1 9.6170 3.5554 6.5546 23 6 5.3457 3.0614 0.1252 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8932 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.8333 0.9767 -0.8908 30 1 3.8340 0.9764 0.8892 31 1 3.8171 3.0621 -2.1523 32 1 2.2851 3.5420 -1.3823 33 1 3.5399 5.5108 -2.2730 34 1 3.3459 5.5899 -0.5050 35 1 5.6661 6.1558 -1.1581 36 1 5.8191 4.5897 -1.9896 37 1 7.4404 5.6882 0.2306 38 1 7.7297 4.0258 -0.3362 39 1 9.4734 4.3912 1.5903 40 1 12.2504 3.9753 3.3947 41 1 5.8217 2.5458 -0.7090 42 1 5.6704 2.6110 1.0632 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113938117.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:47 Heat of formation + Delta-G solvation = -94.062571 kcal Electronic energy + Delta-G solvation = -21127.225314 eV Core-core repulsion = 17913.705385 eV Total energy + Delta-G solvation = -3213.519928 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.38921 -38.12637 -37.25658 -34.04018 -33.43296 -31.84221 -31.18158 -30.62088 -27.40532 -25.63992 -24.62575 -23.01117 -22.62766 -21.44222 -19.51204 -19.12628 -17.82607 -16.67091 -16.13141 -15.96275 -15.52081 -14.83835 -14.63429 -14.49121 -14.09687 -13.99345 -13.71026 -13.34280 -13.17627 -12.77916 -12.59353 -12.51024 -12.06829 -11.74951 -11.52453 -11.42856 -11.39021 -11.27644 -10.98248 -10.87001 -10.46009 -10.37927 -10.24439 -10.17830 -10.12508 -9.58103 -9.44016 -8.38501 -7.94221 -7.79902 -6.39428 -3.80030 3.19075 3.27585 3.33761 3.55676 3.94559 4.08994 4.29955 4.83310 4.89672 4.93169 5.04001 5.06485 5.17529 5.21859 5.27252 5.34774 5.44312 5.48507 5.55355 5.58804 5.66854 5.73955 5.74874 5.82867 5.89154 5.92437 5.95485 6.02151 6.10593 6.23738 6.29078 6.33572 6.52142 6.59219 7.19419 7.37124 7.48689 7.57454 8.09426 8.65116 9.20945 9.57796 10.10054 10.78488 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.020749 B = 0.003953 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.126432 B = 7081.922189 C = 8178.520617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.056 3.944 3 O -0.387 6.387 4 C 0.069 3.931 5 C -0.079 4.079 6 H 0.089 0.911 7 C -0.110 4.110 8 C -0.115 4.115 9 C 0.054 3.946 10 N -0.513 5.513 11 C 0.047 3.953 12 C 0.444 3.556 13 O -0.575 6.575 14 N -0.566 5.566 15 C -0.298 4.298 16 H 0.103 0.897 17 C 0.021 3.979 18 N -0.903 5.903 19 Si 0.929 3.071 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.269 1.269 23 C 0.064 3.936 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.044 0.956 28 H 0.047 0.953 29 H 0.045 0.955 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.028 0.972 37 H 0.090 0.910 38 H 0.045 0.955 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.022 0.978 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.691 -3.726 -11.103 18.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.306 6.306 4 C -0.008 4.008 5 C -0.098 4.098 6 H 0.108 0.892 7 C -0.148 4.148 8 C -0.153 4.153 9 C -0.074 4.074 10 N -0.238 5.238 11 C -0.085 4.085 12 C 0.229 3.771 13 O -0.459 6.459 14 N -0.203 5.203 15 C -0.427 4.427 16 H 0.121 0.879 17 C -0.180 4.180 18 N -0.545 5.545 19 Si 0.756 3.244 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.194 1.194 23 C -0.064 4.064 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.046 0.954 37 H 0.108 0.892 38 H 0.063 0.937 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.040 0.960 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -14.462 -3.520 -10.176 18.030 hybrid contribution 1.510 -0.769 -0.212 1.708 sum -12.952 -4.289 -10.388 17.148 Atomic orbital electron populations 1.21731 0.93962 1.01983 1.03070 1.22422 0.95406 0.84282 0.99943 1.87864 1.21454 1.25885 1.95412 1.22494 0.80758 0.97426 1.00086 1.21097 0.95839 0.93467 0.99366 0.89245 1.21572 1.01030 0.95486 0.96699 1.21568 0.95218 0.96907 1.01583 1.22125 0.96023 0.99283 0.89947 1.61405 1.15413 1.14786 1.32155 1.21853 0.88200 1.01884 0.96534 1.19776 0.83645 0.84814 0.88870 1.90508 1.45385 1.53664 1.56333 1.41887 1.05700 1.59458 1.13293 1.19697 0.92903 1.41539 0.88575 0.87936 1.25251 0.95203 0.97624 0.99907 1.69612 0.99940 1.48855 1.36066 0.85870 0.77932 0.78562 0.82006 1.20475 1.20956 1.19395 1.22072 0.93765 0.88532 1.02006 0.91823 0.91999 0.91346 0.93728 0.93455 0.93712 0.92929 0.92843 0.91397 0.91863 0.90967 0.90904 0.95414 0.89228 0.93674 0.77534 0.91925 0.95957 0.88430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.28 37.15 0.38 -0.89 16 2 C 0.06 0.58 6.66 37.15 0.25 0.83 16 3 O -0.39 -5.13 9.94 -35.23 -0.35 -5.48 16 4 C 0.07 0.92 5.32 37.16 0.20 1.12 16 5 C -0.08 -1.15 2.59 -90.54 -0.23 -1.39 16 6 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 7 C -0.11 -1.38 5.16 -26.60 -0.14 -1.52 16 8 C -0.11 -1.40 6.09 -26.65 -0.16 -1.56 16 9 C 0.05 0.74 5.46 -3.83 -0.02 0.72 16 10 N -0.51 -8.87 4.35 -236.12 -1.03 -9.90 16 11 C 0.05 0.85 5.45 -4.98 -0.03 0.83 16 12 C 0.44 10.57 7.31 -10.99 -0.08 10.49 16 13 O -0.58 -15.62 14.29 5.55 0.08 -15.54 16 14 N -0.57 -14.46 5.29 -10.96 -0.06 -14.51 16 15 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 16 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 17 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 18 N -0.90 -24.72 13.05 55.50 0.72 -24.00 16 19 Si 0.93 21.17 29.55 -169.99 -5.02 16.14 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 23 C 0.06 1.08 4.40 -3.84 -0.02 1.06 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.83 7.90 -51.93 -0.41 0.42 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 0.92 8.01 -51.93 -0.42 0.50 16 36 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.09 1.49 7.98 -51.93 -0.41 1.07 16 38 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 39 H 0.39 9.57 7.90 -40.82 -0.32 9.25 16 40 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 41 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.10 1.96 6.06 -51.93 -0.31 1.65 16 LS Contribution 338.95 15.07 5.11 5.11 Total: -1.00 -30.95 338.95 -7.94 -38.90 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -7.31 Total: 7.60 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -0.09 Total: 1.68 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: -0.36 Total: -48.41 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.27 Total: -21.02 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.95 -7.94 -38.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113938117.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.165 kcal (2) G-P(sol) polarization free energy of solvation -30.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds