Wall clock time and date at job start Mon Mar 30 2020 01:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42897 * 109.47511 * 2 1 4 4 C 1.42895 * 114.00471 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47518 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.50551 * 54.91512 * 5 4 3 7 7 C 1.53124 * 109.53093 * 294.81934 * 5 4 3 8 8 C 1.53126 * 109.15864 * 182.38243 * 7 5 4 9 9 C 1.53039 * 109.27449 * 57.65819 * 8 7 5 10 10 N 1.46847 * 109.52415 * 300.81595 * 9 8 7 11 11 C 1.46894 * 111.00301 * 185.84283 * 10 9 8 12 12 C 1.50697 * 109.47436 * 169.40141 * 11 10 9 13 13 O 1.21291 * 119.99911 * 353.73505 * 12 11 10 14 14 N 1.34775 * 120.00062 * 173.73091 * 12 11 10 15 15 C 1.37100 * 119.99889 * 179.97438 * 14 12 11 16 16 H 1.07995 * 120.00122 * 0.02562 * 15 14 12 17 17 C 1.38953 * 119.99491 * 179.72679 * 15 14 12 18 18 N 1.31411 * 120.00647 * 0.27531 * 17 15 14 19 19 Si 1.86804 * 119.99542 * 180.27752 * 17 15 14 20 20 H 1.48503 * 109.46957 * 90.00049 * 19 17 15 21 21 H 1.48499 * 109.47275 * 209.99683 * 19 17 15 22 22 H 1.48495 * 109.47460 * 329.99966 * 19 17 15 23 23 C 1.46848 * 111.19414 * 61.74398 * 10 9 8 24 24 H 1.09001 * 109.46711 * 299.99858 * 1 2 3 25 25 H 1.08998 * 109.47612 * 59.99628 * 1 2 3 26 26 H 1.08998 * 109.47084 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46711 * 240.00142 * 2 1 3 28 28 H 1.08998 * 109.47612 * 120.00372 * 2 1 3 29 29 H 1.09003 * 109.47502 * 59.99981 * 4 3 2 30 30 H 1.09008 * 109.47116 * 300.00038 * 4 3 2 31 31 H 1.08995 * 109.52484 * 302.29066 * 7 5 4 32 32 H 1.08999 * 109.52218 * 62.41915 * 7 5 4 33 33 H 1.09001 * 109.49736 * 177.59492 * 8 7 5 34 34 H 1.08997 * 109.50014 * 297.67653 * 8 7 5 35 35 H 1.08996 * 109.45862 * 180.80652 * 9 8 7 36 36 H 1.08992 * 109.46226 * 60.83478 * 9 8 7 37 37 H 1.09006 * 109.47265 * 49.39876 * 11 10 9 38 38 H 1.09005 * 109.47135 * 289.40115 * 11 10 9 39 39 H 0.97001 * 120.00088 * 0.02562 * 14 12 11 40 40 H 0.96996 * 119.99972 * 179.97438 * 18 17 15 41 41 H 1.09004 * 109.46482 * 58.27918 * 23 10 9 42 42 H 1.09002 * 109.45941 * 178.25120 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9383 0.0001 6 1 3.3491 3.4418 0.8414 7 6 3.3716 3.5899 -1.3091 8 6 3.8228 5.0531 -1.3251 9 6 5.3432 5.1148 -1.1615 10 7 5.7266 4.4794 0.1057 11 6 7.1638 4.6421 0.3624 12 6 7.4734 4.2147 1.7740 13 8 6.5718 3.9224 2.5307 14 7 8.7523 4.1571 2.1954 15 6 9.0340 3.7688 3.4797 16 1 8.2311 3.5086 4.1536 17 6 10.3528 3.7040 3.9125 18 7 11.3298 4.0202 3.0924 19 14 10.7370 3.1675 5.6600 20 1 10.9130 1.6934 5.6978 21 1 11.9867 3.8269 6.1169 22 1 9.6170 3.5554 6.5546 23 6 5.3457 3.0614 0.1252 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8932 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.8333 0.9767 -0.8908 30 1 3.8340 0.9764 0.8892 31 1 3.8171 3.0621 -2.1523 32 1 2.2851 3.5420 -1.3823 33 1 3.5399 5.5108 -2.2730 34 1 3.3459 5.5899 -0.5050 35 1 5.6661 6.1558 -1.1581 36 1 5.8191 4.5897 -1.9896 37 1 7.4404 5.6882 0.2306 38 1 7.7297 4.0258 -0.3362 39 1 9.4734 4.3912 1.5903 40 1 12.2504 3.9753 3.3947 41 1 5.8217 2.5458 -0.7090 42 1 5.6704 2.6110 1.0632 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113938117.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:47 Heat of formation + Delta-G solvation = -115.756109 kcal Electronic energy + Delta-G solvation = -21128.166016 eV Core-core repulsion = 17913.705385 eV Total energy + Delta-G solvation = -3214.460631 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.77394 -39.59791 -38.51886 -35.97529 -34.76108 -33.24378 -32.84897 -31.54096 -28.97764 -26.71123 -26.48820 -24.17565 -23.57762 -22.57983 -20.99293 -20.63778 -19.86514 -17.77123 -17.61308 -17.08190 -16.83184 -16.51993 -16.19704 -15.72591 -15.61734 -15.36666 -14.89371 -14.81930 -14.55094 -13.86231 -13.67308 -13.63113 -13.38486 -13.30890 -13.08863 -12.78735 -12.58204 -12.41838 -12.35176 -12.21535 -12.12565 -11.90750 -11.56165 -11.50857 -11.30530 -11.20426 -10.55141 -10.25545 -9.99223 -9.16703 -8.46162 -5.94660 1.37518 1.41093 1.54013 2.06708 2.28305 2.53277 2.92895 3.20777 3.43216 3.77206 3.89496 3.99805 4.15781 4.21141 4.26332 4.34525 4.35247 4.45123 4.46468 4.49528 4.50866 4.53675 4.57899 4.71338 4.84236 4.86409 4.93987 5.02852 5.03753 5.12705 5.20331 5.27101 5.38318 5.41262 5.49448 5.91852 6.10547 6.24257 6.30375 6.62057 7.13982 7.57754 8.14168 8.71410 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.020749 B = 0.003953 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.126432 B = 7081.922189 C = 8178.520617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.047 3.953 3 O -0.403 6.403 4 C 0.074 3.926 5 C -0.074 4.074 6 H 0.058 0.942 7 C -0.102 4.102 8 C -0.111 4.111 9 C 0.053 3.947 10 N -0.536 5.536 11 C 0.058 3.942 12 C 0.441 3.559 13 O -0.614 6.614 14 N -0.575 5.575 15 C -0.332 4.332 16 H 0.077 0.923 17 C -0.013 4.013 18 N -0.921 5.921 19 Si 0.992 3.008 20 H -0.271 1.271 21 H -0.270 1.270 22 H -0.274 1.274 23 C 0.069 3.931 24 H 0.054 0.946 25 H 0.063 0.937 26 H 0.090 0.910 27 H 0.059 0.941 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.038 0.962 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.057 0.943 35 H 0.085 0.915 36 H 0.044 0.956 37 H 0.112 0.888 38 H 0.066 0.934 39 H 0.396 0.604 40 H 0.277 0.723 41 H 0.038 0.962 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.899 -3.834 -12.808 19.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.029 4.029 3 O -0.323 6.323 4 C -0.003 4.003 5 C -0.093 4.093 6 H 0.077 0.923 7 C -0.140 4.140 8 C -0.149 4.149 9 C -0.074 4.074 10 N -0.261 5.261 11 C -0.073 4.073 12 C 0.228 3.772 13 O -0.500 6.500 14 N -0.213 5.213 15 C -0.461 4.461 16 H 0.095 0.905 17 C -0.213 4.213 18 N -0.563 5.563 19 Si 0.815 3.185 20 H -0.196 1.196 21 H -0.195 1.195 22 H -0.199 1.199 23 C -0.059 4.059 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.109 0.891 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.112 0.888 34 H 0.075 0.925 35 H 0.103 0.897 36 H 0.063 0.937 37 H 0.130 0.870 38 H 0.084 0.916 39 H 0.230 0.770 40 H 0.087 0.913 41 H 0.056 0.944 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.669 -3.621 -11.912 19.240 hybrid contribution 1.519 -0.749 0.302 1.720 sum -13.151 -4.370 -11.609 18.078 Atomic orbital electron populations 1.21746 0.92543 1.03385 1.02720 1.22677 0.96607 0.83030 1.00636 1.87838 1.21085 1.27867 1.95523 1.22392 0.81189 0.96485 1.00255 1.20998 0.94146 0.94454 0.99732 0.92342 1.21521 1.01296 0.95697 0.95485 1.21579 0.94102 0.96611 1.02615 1.22257 0.96993 0.99728 0.88403 1.61375 1.14553 1.15194 1.35002 1.21734 0.89578 1.03278 0.92685 1.20810 0.82521 0.82978 0.90876 1.90484 1.46389 1.54897 1.58232 1.41947 1.06546 1.60063 1.12763 1.19644 0.92994 1.43754 0.89735 0.90453 1.26018 0.94534 0.97022 1.03678 1.69670 1.00328 1.48721 1.37533 0.84947 0.77807 0.78508 0.77195 1.19618 1.19491 1.19861 1.21922 0.95230 0.88485 1.00228 0.92675 0.91817 0.89080 0.92242 0.93541 0.91863 0.94408 0.91327 0.91013 0.88766 0.92456 0.89675 0.93738 0.86993 0.91605 0.77048 0.91321 0.94424 0.92787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 10.28 71.98 0.74 -1.54 16 2 C 0.05 0.91 6.66 71.98 0.48 1.39 16 3 O -0.40 -10.51 9.94 -148.98 -1.48 -11.99 16 4 C 0.07 1.95 5.32 71.98 0.38 2.33 16 5 C -0.07 -2.18 2.59 -10.74 -0.03 -2.20 16 6 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 7 C -0.10 -2.35 5.16 30.68 0.16 -2.20 16 8 C -0.11 -2.43 6.09 30.65 0.19 -2.24 16 9 C 0.05 1.30 5.46 86.33 0.47 1.77 16 10 N -0.54 -18.11 4.35 -900.95 -3.92 -22.03 16 11 C 0.06 2.08 5.45 85.56 0.47 2.55 16 12 C 0.44 21.50 7.31 87.66 0.64 22.14 16 13 O -0.61 -34.85 14.29 -3.07 -0.04 -34.90 16 14 N -0.58 -30.05 5.29 -306.99 -1.62 -31.67 16 15 C -0.33 -19.12 9.68 84.04 0.81 -18.31 16 16 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 17 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 18 N -0.92 -50.20 13.05 21.66 0.28 -49.91 16 19 Si 0.99 43.46 29.55 68.60 2.03 45.49 16 20 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 21 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 22 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 23 C 0.07 2.34 4.40 86.32 0.38 2.72 16 24 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.06 0.96 8.14 -2.39 -0.02 0.95 16 26 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.07 1.39 8.14 -2.39 -0.02 1.38 16 32 H 0.07 1.62 7.90 -2.39 -0.02 1.60 16 33 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.08 1.88 8.01 -2.39 -0.02 1.86 16 36 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.11 3.51 7.98 -2.38 -0.02 3.49 16 38 H 0.07 2.10 8.12 -2.38 -0.02 2.08 16 39 H 0.40 19.58 7.90 -92.71 -0.73 18.85 16 40 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 41 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.05 2.28 6.06 -2.39 -0.01 2.27 16 Total: -1.00 -68.38 338.95 0.66 -67.72 By element: Atomic # 1 Polarization: 30.87 SS G_CDS: 0.25 Total: 31.13 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: 5.16 Total: 6.18 kcal Atomic # 7 Polarization: -98.36 SS G_CDS: -5.26 Total: -103.62 kcal Atomic # 8 Polarization: -45.37 SS G_CDS: -1.52 Total: -46.89 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -68.38 0.66 -67.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113938117.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.036 kcal (2) G-P(sol) polarization free energy of solvation -68.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds