Wall clock time and date at job start Mon Mar 30 2020 01:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42899 * 109.47113 * 2 1 4 4 C 1.42903 * 113.99629 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46726 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.50172 * 304.99731 * 5 4 3 7 7 C 1.53116 * 109.50643 * 65.07607 * 5 4 3 8 8 C 1.53124 * 109.16011 * 177.59331 * 7 5 4 9 9 C 1.53034 * 109.27680 * 302.34363 * 8 7 5 10 10 N 1.46856 * 109.52242 * 59.18536 * 9 8 7 11 11 C 1.46896 * 110.99892 * 174.15895 * 10 9 8 12 12 C 1.50699 * 109.47016 * 293.94885 * 11 10 9 13 13 O 1.21293 * 120.00032 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00245 * 180.02562 * 12 11 10 15 15 C 1.37103 * 120.00293 * 179.97438 * 14 12 11 16 16 H 1.08004 * 119.99740 * 0.02562 * 15 14 12 17 17 C 1.38951 * 120.00034 * 179.97438 * 15 14 12 18 18 N 1.31407 * 120.00074 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99917 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.46900 * 59.99923 * 19 17 15 21 21 H 1.48501 * 109.47028 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46871 * 300.00232 * 19 17 15 23 23 C 1.46847 * 111.22989 * 298.27097 * 10 9 8 24 24 H 1.08997 * 109.46502 * 300.00085 * 1 2 3 25 25 H 1.08998 * 109.46733 * 60.00191 * 1 2 3 26 26 H 1.08997 * 109.46916 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46516 * 239.99933 * 2 1 3 28 28 H 1.09004 * 109.47113 * 120.00401 * 2 1 3 29 29 H 1.09002 * 109.47382 * 59.99956 * 4 3 2 30 30 H 1.09001 * 109.46938 * 299.99942 * 4 3 2 31 31 H 1.08991 * 109.52221 * 297.49970 * 7 5 4 32 32 H 1.09003 * 109.51886 * 57.68846 * 7 5 4 33 33 H 1.09000 * 109.49827 * 62.29087 * 8 7 5 34 34 H 1.09001 * 109.49956 * 182.36703 * 8 7 5 35 35 H 1.09005 * 109.46183 * 179.19256 * 9 8 7 36 36 H 1.08991 * 109.46991 * 299.17474 * 9 8 7 37 37 H 1.08999 * 109.47911 * 53.94948 * 11 10 9 38 38 H 1.08997 * 109.47324 * 173.95289 * 11 10 9 39 39 H 0.97003 * 120.00071 * 359.97438 * 14 12 11 40 40 H 0.96998 * 120.00004 * 180.02562 * 18 17 15 41 41 H 1.09005 * 109.43262 * 301.68909 * 23 10 9 42 42 H 1.08992 * 109.49942 * 181.71711 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4600 -0.0006 5 6 3.8255 2.9383 0.0001 6 1 3.3496 3.4423 -0.8411 7 6 3.3703 3.5883 1.3096 8 6 3.8216 5.0514 1.3278 9 6 5.3421 5.1131 1.1661 10 7 5.7269 4.4794 -0.1016 11 6 7.1644 4.6422 -0.3565 12 6 7.4734 6.1007 -0.5766 13 8 6.5837 6.9235 -0.5257 14 7 8.7383 6.4907 -0.8301 15 6 9.0194 7.8175 -1.0309 16 1 8.2272 8.5502 -0.9855 17 6 10.3236 8.2197 -1.2917 18 7 11.2876 7.3283 -1.3465 19 14 10.7066 10.0275 -1.5646 20 1 10.3275 10.8018 -0.3555 21 1 12.1597 10.1921 -1.8229 22 1 9.9371 10.5257 -2.7329 23 6 5.3459 3.0614 -0.1243 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8901 28 1 1.8934 -0.5139 0.8900 29 1 3.8334 0.9766 -0.8908 30 1 3.8341 0.9763 0.8892 31 1 2.2837 3.5414 1.3810 32 1 3.8149 3.0594 2.1526 33 1 3.3461 5.5891 0.5075 34 1 3.5371 5.5081 2.2757 35 1 5.6652 6.1542 1.1643 36 1 5.8172 4.5869 1.9939 37 1 7.7293 4.2766 0.5010 38 1 7.4427 4.0740 -1.2440 39 1 9.4499 5.8327 -0.8705 40 1 12.1980 7.6091 -1.5282 41 1 5.8215 2.5446 0.7094 42 1 5.6710 2.6123 -1.0627 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113938118.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:49 Heat of formation + Delta-G solvation = -93.311126 kcal Electronic energy + Delta-G solvation = -20909.777529 eV Core-core repulsion = 17696.290186 eV Total energy + Delta-G solvation = -3213.487343 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.41691 -38.24713 -37.27108 -34.08673 -33.35693 -31.94203 -31.15938 -30.68801 -27.43961 -25.67703 -24.60222 -23.08759 -22.57595 -21.60612 -19.53936 -19.09696 -17.80908 -16.83457 -16.26833 -15.91313 -15.52957 -14.89952 -14.64723 -14.55290 -14.08590 -14.00142 -13.59562 -13.42335 -13.30522 -12.83620 -12.66583 -12.47280 -12.14184 -11.69186 -11.60112 -11.52693 -11.42221 -11.30122 -10.97708 -10.82883 -10.49335 -10.42317 -10.21405 -10.15891 -10.15148 -9.72854 -9.42115 -8.37638 -7.93942 -7.77516 -6.38692 -3.79305 3.22241 3.27521 3.31819 3.41305 3.94565 4.10455 4.30180 4.72806 4.79305 4.84964 4.97218 5.04054 5.09433 5.11547 5.26408 5.28920 5.35830 5.39952 5.51811 5.56248 5.62912 5.63844 5.72500 5.78080 5.84045 5.87609 5.95856 6.04026 6.16786 6.24275 6.32171 6.33578 6.58641 6.65844 7.05213 7.38844 7.51076 7.58058 8.09829 8.65600 9.21398 9.58150 10.10409 10.79129 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.051589 B = 0.003048 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.616815 B = 9183.864439 C = 9446.517507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.385 6.385 4 C 0.070 3.930 5 C -0.082 4.082 6 H 0.088 0.912 7 C -0.110 4.110 8 C -0.114 4.114 9 C 0.052 3.948 10 N -0.514 5.514 11 C 0.047 3.953 12 C 0.445 3.555 13 O -0.576 6.576 14 N -0.566 5.566 15 C -0.298 4.298 16 H 0.102 0.898 17 C 0.021 3.979 18 N -0.903 5.903 19 Si 0.930 3.070 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.274 1.274 23 C 0.064 3.936 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.102 0.898 36 H 0.019 0.981 37 H 0.046 0.954 38 H 0.088 0.912 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.029 0.971 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.611 -15.105 4.235 20.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.305 6.305 4 C -0.007 4.007 5 C -0.100 4.100 6 H 0.107 0.893 7 C -0.147 4.147 8 C -0.151 4.151 9 C -0.075 4.075 10 N -0.238 5.238 11 C -0.085 4.085 12 C 0.230 3.770 13 O -0.460 6.460 14 N -0.202 5.202 15 C -0.427 4.427 16 H 0.120 0.880 17 C -0.180 4.180 18 N -0.545 5.545 19 Si 0.758 3.242 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.065 4.065 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.120 0.880 36 H 0.038 0.962 37 H 0.064 0.936 38 H 0.106 0.894 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.047 0.953 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.368 -14.117 3.857 20.509 hybrid contribution 1.468 -0.322 0.429 1.563 sum -12.900 -14.438 4.286 19.830 Atomic orbital electron populations 1.21739 0.93862 1.02051 1.03192 1.22433 0.95536 0.84163 0.99865 1.87895 1.21272 1.25941 1.95379 1.22499 0.81032 0.97320 0.99892 1.21125 0.95407 0.93416 1.00100 0.89328 1.21572 1.00974 0.96058 0.96125 1.21554 0.95814 0.96003 1.01777 1.22272 0.95279 1.01918 0.88073 1.61420 1.15289 1.12236 1.34853 1.21833 0.88263 0.97263 1.01104 1.19746 0.83609 0.89287 0.84347 1.90486 1.45685 1.53783 1.56040 1.41867 1.07000 1.09083 1.62291 1.19647 0.94127 0.83857 1.45108 0.87982 1.25253 0.95265 1.00015 0.97463 1.69603 1.01171 1.34117 1.49583 0.85922 0.77071 0.82171 0.79077 1.19943 1.21025 1.19899 1.21994 0.94364 0.89524 1.00607 0.91873 0.91816 0.91292 0.93565 0.93647 0.93301 0.93557 0.91440 0.92862 0.90905 0.91932 0.87951 0.96246 0.93581 0.89407 0.77520 0.91874 0.95262 0.90835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.28 37.16 0.38 -0.70 16 2 C 0.06 0.48 6.66 37.16 0.25 0.73 16 3 O -0.39 -4.41 9.93 -35.23 -0.35 -4.76 16 4 C 0.07 0.74 5.32 37.16 0.20 0.93 16 5 C -0.08 -1.03 2.59 -90.54 -0.23 -1.26 16 6 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 7 C -0.11 -1.38 5.16 -26.61 -0.14 -1.52 16 8 C -0.11 -1.65 6.09 -26.65 -0.16 -1.81 16 9 C 0.05 0.89 5.11 -3.83 -0.02 0.87 16 10 N -0.51 -8.90 4.39 -236.11 -1.04 -9.93 16 11 C 0.05 0.86 5.45 -4.98 -0.03 0.83 16 12 C 0.44 10.63 7.46 -10.99 -0.08 10.55 16 13 O -0.58 -15.64 13.92 5.55 0.08 -15.57 16 14 N -0.57 -14.48 5.29 -10.96 -0.06 -14.54 16 15 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 16 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 17 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 18 N -0.90 -24.75 13.05 55.50 0.72 -24.03 16 19 Si 0.93 21.23 29.55 -169.99 -5.02 16.21 16 20 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 23 C 0.06 0.86 4.75 -3.83 -0.02 0.84 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.83 7.90 -51.93 -0.41 0.42 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.10 2.11 5.80 -51.93 -0.30 1.81 16 36 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 38 H 0.09 1.45 7.98 -51.93 -0.41 1.04 16 39 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16 40 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.91 8.01 -51.93 -0.42 0.50 16 LS Contribution 338.52 15.07 5.10 5.10 Total: -1.00 -30.99 338.52 -7.95 -38.94 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -7.29 Total: 7.13 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -0.09 Total: 1.44 kcal Atomic # 7 Polarization: -48.13 SS G_CDS: -0.37 Total: -48.50 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.27 Total: -20.33 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.99 -7.95 -38.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113938118.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.369 kcal (2) G-P(sol) polarization free energy of solvation -30.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds