Wall clock time and date at job start Mon Mar 30 2020 01:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42899 * 109.47113 * 2 1 4 4 C 1.42903 * 113.99629 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46726 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.50172 * 304.99731 * 5 4 3 7 7 C 1.53116 * 109.50643 * 65.07607 * 5 4 3 8 8 C 1.53124 * 109.16011 * 177.59331 * 7 5 4 9 9 C 1.53034 * 109.27680 * 302.34363 * 8 7 5 10 10 N 1.46856 * 109.52242 * 59.18536 * 9 8 7 11 11 C 1.46896 * 110.99892 * 174.15895 * 10 9 8 12 12 C 1.50699 * 109.47016 * 293.94885 * 11 10 9 13 13 O 1.21293 * 120.00032 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00245 * 180.02562 * 12 11 10 15 15 C 1.37103 * 120.00293 * 179.97438 * 14 12 11 16 16 H 1.08004 * 119.99740 * 0.02562 * 15 14 12 17 17 C 1.38951 * 120.00034 * 179.97438 * 15 14 12 18 18 N 1.31407 * 120.00074 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99917 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.46900 * 59.99923 * 19 17 15 21 21 H 1.48501 * 109.47028 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46871 * 300.00232 * 19 17 15 23 23 C 1.46847 * 111.22989 * 298.27097 * 10 9 8 24 24 H 1.08997 * 109.46502 * 300.00085 * 1 2 3 25 25 H 1.08998 * 109.46733 * 60.00191 * 1 2 3 26 26 H 1.08997 * 109.46916 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46516 * 239.99933 * 2 1 3 28 28 H 1.09004 * 109.47113 * 120.00401 * 2 1 3 29 29 H 1.09002 * 109.47382 * 59.99956 * 4 3 2 30 30 H 1.09001 * 109.46938 * 299.99942 * 4 3 2 31 31 H 1.08991 * 109.52221 * 297.49970 * 7 5 4 32 32 H 1.09003 * 109.51886 * 57.68846 * 7 5 4 33 33 H 1.09000 * 109.49827 * 62.29087 * 8 7 5 34 34 H 1.09001 * 109.49956 * 182.36703 * 8 7 5 35 35 H 1.09005 * 109.46183 * 179.19256 * 9 8 7 36 36 H 1.08991 * 109.46991 * 299.17474 * 9 8 7 37 37 H 1.08999 * 109.47911 * 53.94948 * 11 10 9 38 38 H 1.08997 * 109.47324 * 173.95289 * 11 10 9 39 39 H 0.97003 * 120.00071 * 359.97438 * 14 12 11 40 40 H 0.96998 * 120.00004 * 180.02562 * 18 17 15 41 41 H 1.09005 * 109.43262 * 301.68909 * 23 10 9 42 42 H 1.08992 * 109.49942 * 181.71711 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4600 -0.0006 5 6 3.8255 2.9383 0.0001 6 1 3.3496 3.4423 -0.8411 7 6 3.3703 3.5883 1.3096 8 6 3.8216 5.0514 1.3278 9 6 5.3421 5.1131 1.1661 10 7 5.7269 4.4794 -0.1016 11 6 7.1644 4.6422 -0.3565 12 6 7.4734 6.1007 -0.5766 13 8 6.5837 6.9235 -0.5257 14 7 8.7383 6.4907 -0.8301 15 6 9.0194 7.8175 -1.0309 16 1 8.2272 8.5502 -0.9855 17 6 10.3236 8.2197 -1.2917 18 7 11.2876 7.3283 -1.3465 19 14 10.7066 10.0275 -1.5646 20 1 10.3275 10.8018 -0.3555 21 1 12.1597 10.1921 -1.8229 22 1 9.9371 10.5257 -2.7329 23 6 5.3459 3.0614 -0.1243 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8901 28 1 1.8934 -0.5139 0.8900 29 1 3.8334 0.9766 -0.8908 30 1 3.8341 0.9763 0.8892 31 1 2.2837 3.5414 1.3810 32 1 3.8149 3.0594 2.1526 33 1 3.3461 5.5891 0.5075 34 1 3.5371 5.5081 2.2757 35 1 5.6652 6.1542 1.1643 36 1 5.8172 4.5869 1.9939 37 1 7.7293 4.2766 0.5010 38 1 7.4427 4.0740 -1.2440 39 1 9.4499 5.8327 -0.8705 40 1 12.1980 7.6091 -1.5282 41 1 5.8215 2.5446 0.7094 42 1 5.6710 2.6123 -1.0627 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113938118.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:49 Heat of formation + Delta-G solvation = -115.002975 kcal Electronic energy + Delta-G solvation = -20910.718159 eV Core-core repulsion = 17696.290186 eV Total energy + Delta-G solvation = -3214.427972 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.76160 -39.61230 -38.46453 -35.98685 -34.68619 -33.29083 -32.85059 -31.50907 -28.99976 -26.65729 -26.46459 -24.04284 -23.50650 -22.78576 -20.94789 -20.63089 -19.84491 -17.86762 -17.41275 -17.01786 -16.80380 -16.52090 -16.27244 -15.73411 -15.60861 -15.31261 -14.88743 -14.76771 -14.53805 -13.97778 -13.65111 -13.56624 -13.45983 -13.28800 -13.02386 -12.67194 -12.64449 -12.42624 -12.32969 -12.16728 -12.12050 -11.89243 -11.54973 -11.53883 -11.29995 -11.18670 -10.47306 -10.22836 -9.98651 -9.16364 -8.45427 -5.93930 1.40021 1.41498 1.52503 2.07052 2.28212 2.54911 3.01010 3.21339 3.40401 3.78634 3.91695 3.97794 4.20825 4.21636 4.30075 4.38404 4.39225 4.47577 4.50002 4.51548 4.54301 4.56862 4.59047 4.68741 4.81378 4.87384 4.92758 5.05440 5.08250 5.11838 5.20280 5.30048 5.38985 5.41743 5.48670 5.92367 6.12310 6.24912 6.37221 6.62484 7.14342 7.58072 8.14450 8.71849 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.051589 B = 0.003048 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.616815 B = 9183.864439 C = 9446.517507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 O -0.409 6.409 4 C 0.075 3.925 5 C -0.079 4.079 6 H 0.066 0.934 7 C -0.101 4.101 8 C -0.109 4.109 9 C 0.055 3.945 10 N -0.536 5.536 11 C 0.058 3.942 12 C 0.441 3.559 13 O -0.614 6.614 14 N -0.575 5.575 15 C -0.332 4.332 16 H 0.078 0.922 17 C -0.014 4.014 18 N -0.921 5.921 19 Si 0.992 3.008 20 H -0.272 1.272 21 H -0.270 1.270 22 H -0.273 1.273 23 C 0.065 3.935 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.089 0.911 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.033 0.967 37 H 0.067 0.933 38 H 0.111 0.889 39 H 0.396 0.604 40 H 0.277 0.723 41 H 0.048 0.952 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.610 -16.935 4.598 22.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.329 6.329 4 C -0.002 4.002 5 C -0.098 4.098 6 H 0.085 0.915 7 C -0.139 4.139 8 C -0.147 4.147 9 C -0.073 4.073 10 N -0.261 5.261 11 C -0.073 4.073 12 C 0.229 3.771 13 O -0.500 6.500 14 N -0.213 5.213 15 C -0.461 4.461 16 H 0.096 0.904 17 C -0.213 4.213 18 N -0.562 5.562 19 Si 0.816 3.184 20 H -0.197 1.197 21 H -0.194 1.194 22 H -0.198 1.198 23 C -0.062 4.062 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.108 0.892 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.051 0.949 37 H 0.085 0.915 38 H 0.129 0.871 39 H 0.230 0.770 40 H 0.087 0.913 41 H 0.066 0.934 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.368 -15.983 4.222 21.902 hybrid contribution 1.404 0.216 0.323 1.457 sum -12.963 -15.767 4.545 20.912 Atomic orbital electron populations 1.21766 0.93225 1.03245 1.02521 1.22640 0.96139 0.83008 1.00849 1.87865 1.21624 1.27848 1.95583 1.22421 0.81014 0.95614 1.01163 1.21059 0.94653 0.94944 0.99125 0.91531 1.21503 1.01172 0.94424 0.96769 1.21507 0.93944 0.97635 1.01592 1.22141 0.96907 0.99569 0.88663 1.61370 1.14483 1.15031 1.35192 1.21713 0.89573 0.92984 1.02990 1.20789 0.82485 0.91611 0.82262 1.90466 1.46664 1.55752 1.57104 1.41934 1.07858 1.08457 1.63033 1.19608 0.94284 0.84844 1.47406 0.90422 1.26028 0.94611 1.04174 0.96525 1.69663 1.01512 1.35710 1.49326 0.85000 0.77451 0.77114 0.78838 1.19727 1.19439 1.19789 1.22070 0.94994 0.87080 1.02082 0.92404 0.92618 0.89186 0.92687 0.92472 0.92182 0.92054 0.91151 0.91413 0.93097 0.90621 0.92302 0.94857 0.91506 0.87082 0.77025 0.91322 0.93417 0.89494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 10.28 71.99 0.74 -1.15 16 2 C 0.05 0.73 6.66 71.99 0.48 1.21 16 3 O -0.41 -8.54 9.93 -148.98 -1.48 -10.02 16 4 C 0.07 1.38 5.32 71.98 0.38 1.76 16 5 C -0.08 -1.84 2.59 -10.74 -0.03 -1.87 16 6 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 7 C -0.10 -2.37 5.16 30.67 0.16 -2.21 16 8 C -0.11 -3.13 6.09 30.65 0.19 -2.94 16 9 C 0.05 1.87 5.11 86.32 0.44 2.31 16 10 N -0.54 -18.09 4.39 -900.92 -3.96 -22.05 16 11 C 0.06 2.08 5.45 85.56 0.47 2.55 16 12 C 0.44 21.50 7.46 87.66 0.65 22.15 16 13 O -0.61 -34.68 13.92 -3.07 -0.04 -34.72 16 14 N -0.58 -30.04 5.29 -306.98 -1.62 -31.66 16 15 C -0.33 -19.12 9.68 84.04 0.81 -18.31 16 16 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 17 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 18 N -0.92 -50.19 13.05 21.66 0.28 -49.91 16 19 Si 0.99 43.50 29.55 68.60 2.03 45.52 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 21 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 22 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 23 C 0.07 1.60 4.75 86.33 0.41 2.01 16 24 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 28 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.07 1.63 7.90 -2.39 -0.02 1.61 16 32 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.06 2.52 5.80 -2.38 -0.01 2.51 16 36 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.07 2.12 8.12 -2.39 -0.02 2.11 16 38 H 0.11 3.45 7.98 -2.39 -0.02 3.43 16 39 H 0.40 19.57 7.90 -92.71 -0.73 18.84 16 40 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 41 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 42 H 0.09 1.91 8.01 -2.39 -0.02 1.89 16 Total: -1.00 -68.06 338.52 0.63 -67.43 By element: Atomic # 1 Polarization: 29.92 SS G_CDS: 0.25 Total: 30.17 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: 5.17 Total: 5.23 kcal Atomic # 7 Polarization: -98.32 SS G_CDS: -5.30 Total: -103.61 kcal Atomic # 8 Polarization: -43.22 SS G_CDS: -1.52 Total: -44.74 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Total: -68.06 0.63 -67.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113938118.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.573 kcal (2) G-P(sol) polarization free energy of solvation -68.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds