Wall clock time and date at job start Mon Mar 30 2020 01:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46903 * 111.00430 * 2 1 4 4 C 1.52995 * 109.46946 * 66.04273 * 3 2 1 5 5 C 1.52998 * 109.47470 * 180.02562 * 4 3 2 6 6 C 1.53175 * 109.54388 * 294.56151 * 5 4 3 7 7 C 1.53094 * 109.16661 * 183.14993 * 6 5 4 8 8 O 1.42898 * 109.41211 * 57.60371 * 7 6 5 9 9 C 1.42897 * 114.10001 * 298.84343 * 8 7 6 10 10 C 1.53089 * 109.41656 * 61.16248 * 9 8 7 11 11 C 1.46901 * 111.00238 * 236.04324 * 2 1 3 12 12 C 1.50697 * 109.47133 * 293.95811 * 11 2 1 13 13 O 1.21290 * 119.99892 * 359.97438 * 12 11 2 14 14 N 1.34779 * 120.00102 * 179.97438 * 12 11 2 15 15 C 1.37096 * 120.00270 * 179.97438 * 14 12 11 16 16 H 1.07997 * 119.99735 * 0.02562 * 15 14 12 17 17 C 1.38948 * 120.00053 * 179.97438 * 15 14 12 18 18 N 1.31409 * 120.00171 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99980 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46948 * 60.00023 * 19 17 15 21 21 H 1.48495 * 109.47086 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46972 * 300.00491 * 19 17 15 23 23 H 1.09006 * 109.47096 * 60.00161 * 1 2 3 24 24 H 1.09000 * 109.47432 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46990 * 300.00073 * 1 2 3 26 26 H 1.09002 * 109.46754 * 306.04473 * 3 2 1 27 27 H 1.08994 * 109.47283 * 186.04414 * 3 2 1 28 28 H 1.09002 * 109.47230 * 60.00493 * 4 3 2 29 29 H 1.09007 * 109.47507 * 300.00126 * 4 3 2 30 30 H 1.09004 * 109.61242 * 54.77570 * 5 4 3 31 31 H 1.09004 * 109.52259 * 303.05258 * 6 5 4 32 32 H 1.09006 * 109.52330 * 63.24092 * 6 5 4 33 33 H 1.09006 * 109.47665 * 297.62062 * 7 6 5 34 34 H 1.08993 * 109.47955 * 177.58818 * 7 6 5 35 35 H 1.09002 * 109.48425 * 301.17758 * 9 8 7 36 36 H 1.09001 * 109.49443 * 181.15303 * 9 8 7 37 37 H 1.08997 * 109.52675 * 182.48845 * 10 9 8 38 38 H 1.08995 * 109.52428 * 62.29514 * 10 9 8 39 39 H 1.09008 * 109.46707 * 53.95671 * 11 2 1 40 40 H 1.09002 * 109.47513 * 173.95378 * 11 2 1 41 41 H 0.97001 * 119.99591 * 0.02562 * 14 12 11 42 42 H 0.97001 * 120.00103 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 1.3182 5 6 2.1793 3.4860 1.3181 6 6 3.7105 3.4476 1.3026 7 6 4.2499 4.8782 1.3820 8 8 3.7514 5.5088 2.5634 9 6 2.3272 5.6156 2.6111 10 6 1.7105 4.2148 2.5812 11 6 1.9955 -0.7660 -1.1375 12 6 1.6369 -2.2204 -0.9728 13 8 1.0053 -2.5832 -0.0029 14 7 2.0180 -3.1180 -1.9032 15 6 1.6923 -4.4413 -1.7531 16 1 1.1299 -4.7643 -0.8895 17 6 2.0847 -5.3665 -2.7125 18 7 2.7685 -4.9734 -3.7635 19 14 1.6402 -7.1694 -2.5083 20 1 0.1631 -7.3121 -2.4554 21 1 2.1719 -7.9436 -3.6585 22 1 2.2329 -7.6856 -1.2483 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.5612 1.9273 -0.8310 27 1 3.0797 1.3443 -0.1082 28 1 2.0658 1.5015 2.1492 29 1 0.5471 2.0845 1.4265 30 1 1.8190 4.0159 0.4363 31 1 4.0692 2.8751 2.1580 32 1 4.0538 2.9795 0.3800 33 1 3.9243 5.4386 0.5056 34 1 5.3391 4.8546 1.4145 35 1 1.9763 6.1857 1.7509 36 1 2.0311 6.1236 3.5289 37 1 0.6236 4.2953 2.5729 38 1 2.0287 3.6578 3.4623 39 1 1.5611 -0.3872 -2.0628 40 1 3.0797 -0.6612 -1.1756 41 1 2.5234 -2.8279 -2.6786 42 1 3.0422 -5.6193 -4.4335 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120534917.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:21 Heat of formation + Delta-G solvation = -93.246150 kcal Electronic energy + Delta-G solvation = -20771.931419 eV Core-core repulsion = 17558.446893 eV Total energy + Delta-G solvation = -3213.484526 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.72813 -38.57716 -36.81983 -34.77509 -33.77772 -31.36575 -31.23019 -29.90806 -27.69896 -25.97246 -24.60758 -23.76948 -22.79459 -20.71895 -20.16597 -19.11108 -17.81665 -16.47243 -16.27048 -15.98999 -15.53734 -15.13662 -14.92365 -14.67225 -14.40524 -14.18477 -13.75052 -13.67393 -13.29604 -12.84655 -12.48798 -12.30518 -12.05690 -11.85655 -11.55530 -11.47570 -11.36225 -11.16039 -11.12157 -10.93647 -10.85250 -10.44662 -10.42818 -10.30632 -10.19317 -9.69979 -9.44996 -8.41160 -7.95489 -7.80267 -6.39946 -3.80675 3.21147 3.26574 3.31051 3.64259 3.93032 4.00142 4.25118 4.48136 4.57194 4.70821 4.78085 4.94610 5.06863 5.15179 5.19301 5.23556 5.26511 5.38337 5.44661 5.49215 5.57886 5.61404 5.68181 5.76945 5.80192 5.83157 5.90906 5.99607 6.00328 6.07340 6.16350 6.30314 6.34414 6.60633 6.95213 7.33315 7.46454 7.56739 8.08429 8.64286 9.20066 9.56764 10.09049 10.77878 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.047614 B = 0.002888 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.920243 B = 9694.493266 C =10006.545238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.519 5.519 3 C 0.054 3.946 4 C -0.108 4.108 5 C -0.088 4.088 6 C -0.153 4.153 7 C 0.060 3.940 8 O -0.386 6.386 9 C 0.061 3.939 10 C -0.151 4.151 11 C 0.046 3.954 12 C 0.444 3.556 13 O -0.577 6.577 14 N -0.565 5.565 15 C -0.299 4.299 16 H 0.102 0.898 17 C 0.022 3.978 18 N -0.903 5.903 19 Si 0.931 3.069 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.273 1.273 23 H 0.012 0.988 24 H 0.094 0.906 25 H 0.060 0.940 26 H 0.027 0.973 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.048 0.952 34 H 0.092 0.908 35 H 0.048 0.952 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.046 0.954 40 H 0.087 0.913 41 H 0.392 0.608 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.529 19.693 6.220 20.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.243 5.243 3 C -0.074 4.074 4 C -0.146 4.146 5 C -0.107 4.107 6 C -0.191 4.191 7 C -0.017 4.017 8 O -0.305 6.305 9 C -0.016 4.016 10 C -0.188 4.188 11 C -0.086 4.086 12 C 0.230 3.770 13 O -0.462 6.462 14 N -0.202 5.202 15 C -0.428 4.428 16 H 0.120 0.880 17 C -0.180 4.180 18 N -0.545 5.545 19 Si 0.758 3.242 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.199 1.199 23 H 0.030 0.970 24 H 0.113 0.887 25 H 0.079 0.921 26 H 0.045 0.955 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.066 0.934 34 H 0.110 0.890 35 H 0.066 0.934 36 H 0.109 0.891 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.064 0.936 40 H 0.105 0.895 41 H 0.225 0.775 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.453 19.156 7.280 20.498 hybrid contribution -0.304 -0.479 -1.543 1.644 sum 0.149 18.676 5.738 19.538 Atomic orbital electron populations 1.22558 0.86988 1.04287 0.98810 1.61565 1.08589 1.11593 1.42572 1.22194 1.00060 0.88671 0.96457 1.21605 1.01007 0.93674 0.98335 1.21188 0.95220 0.96511 0.97794 1.22312 0.95798 0.97518 1.03448 1.22605 0.99132 0.92421 0.87518 1.87920 1.20981 1.79854 1.41711 1.22572 0.81112 0.96099 1.01824 1.22240 1.00892 0.96752 0.98963 1.21861 1.00586 0.94167 0.91951 1.19759 0.85380 0.86685 0.85185 1.90479 1.43895 1.80163 1.31617 1.41868 1.49519 1.07353 1.21470 1.19648 1.32975 0.82330 1.07864 0.87987 1.25253 0.96850 1.00548 0.95309 1.69604 1.38143 1.35849 1.10871 0.85922 0.78885 0.81732 0.77704 1.19939 1.20997 1.19887 0.96984 0.88740 0.92100 0.95491 0.90926 0.90818 0.91741 0.91315 0.90711 0.90522 0.93386 0.88964 0.93404 0.89069 0.90904 0.90817 0.93634 0.89525 0.77516 0.91852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 8.96 60.06 0.54 0.90 16 2 N -0.52 -8.87 4.50 -244.37 -1.10 -9.97 16 3 C 0.05 0.70 4.72 -3.82 -0.02 0.68 16 4 C -0.11 -1.21 4.61 -26.73 -0.12 -1.34 16 5 C -0.09 -0.81 2.27 -90.44 -0.21 -1.01 16 6 C -0.15 -1.38 5.10 -26.59 -0.14 -1.52 16 7 C 0.06 0.51 6.84 37.21 0.25 0.77 16 8 O -0.39 -4.00 10.76 -35.23 -0.38 -4.38 16 9 C 0.06 0.50 6.84 37.20 0.25 0.75 16 10 C -0.15 -1.27 5.42 -26.59 -0.14 -1.41 16 11 C 0.05 0.84 5.45 -4.98 -0.03 0.81 16 12 C 0.44 10.66 7.47 -10.99 -0.08 10.57 16 13 O -0.58 -15.74 13.91 5.55 0.08 -15.66 16 14 N -0.57 -14.50 5.29 -10.97 -0.06 -14.55 16 15 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 16 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 17 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 18 N -0.90 -24.74 13.05 55.50 0.72 -24.01 16 19 Si 0.93 21.19 29.55 -169.99 -5.02 16.17 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 23 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 24 H 0.09 1.91 5.83 -51.93 -0.30 1.61 16 25 H 0.06 0.89 6.47 -51.93 -0.34 0.55 16 26 H 0.03 0.33 8.12 -51.93 -0.42 -0.09 16 27 H 0.07 0.89 6.45 -51.93 -0.33 0.55 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.73 6.55 -51.92 -0.34 0.38 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.66 6.75 -51.93 -0.35 0.31 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.05 0.77 8.12 -51.92 -0.42 0.35 16 40 H 0.09 1.44 7.93 -51.93 -0.41 1.03 16 41 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 42 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 332.28 15.07 5.01 5.01 Total: -1.00 -31.29 332.28 -7.66 -38.95 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -6.98 Total: 7.29 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: 0.07 Total: 1.17 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: -0.43 Total: -48.54 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.30 Total: -20.04 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.29 -7.66 -38.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120534917.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.295 kcal (2) G-P(sol) polarization free energy of solvation -31.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds