Wall clock time and date at job start Mon Mar 30 2020 01:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46903 * 111.00430 * 2 1 4 4 C 1.52995 * 109.46946 * 66.04273 * 3 2 1 5 5 C 1.52998 * 109.47470 * 180.02562 * 4 3 2 6 6 C 1.53175 * 109.54388 * 294.56151 * 5 4 3 7 7 C 1.53094 * 109.16661 * 183.14993 * 6 5 4 8 8 O 1.42898 * 109.41211 * 57.60371 * 7 6 5 9 9 C 1.42897 * 114.10001 * 298.84343 * 8 7 6 10 10 C 1.53089 * 109.41656 * 61.16248 * 9 8 7 11 11 C 1.46901 * 111.00238 * 236.04324 * 2 1 3 12 12 C 1.50697 * 109.47133 * 293.95811 * 11 2 1 13 13 O 1.21290 * 119.99892 * 359.97438 * 12 11 2 14 14 N 1.34779 * 120.00102 * 179.97438 * 12 11 2 15 15 C 1.37096 * 120.00270 * 179.97438 * 14 12 11 16 16 H 1.07997 * 119.99735 * 0.02562 * 15 14 12 17 17 C 1.38948 * 120.00053 * 179.97438 * 15 14 12 18 18 N 1.31409 * 120.00171 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99980 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46948 * 60.00023 * 19 17 15 21 21 H 1.48495 * 109.47086 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46972 * 300.00491 * 19 17 15 23 23 H 1.09006 * 109.47096 * 60.00161 * 1 2 3 24 24 H 1.09000 * 109.47432 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46990 * 300.00073 * 1 2 3 26 26 H 1.09002 * 109.46754 * 306.04473 * 3 2 1 27 27 H 1.08994 * 109.47283 * 186.04414 * 3 2 1 28 28 H 1.09002 * 109.47230 * 60.00493 * 4 3 2 29 29 H 1.09007 * 109.47507 * 300.00126 * 4 3 2 30 30 H 1.09004 * 109.61242 * 54.77570 * 5 4 3 31 31 H 1.09004 * 109.52259 * 303.05258 * 6 5 4 32 32 H 1.09006 * 109.52330 * 63.24092 * 6 5 4 33 33 H 1.09006 * 109.47665 * 297.62062 * 7 6 5 34 34 H 1.08993 * 109.47955 * 177.58818 * 7 6 5 35 35 H 1.09002 * 109.48425 * 301.17758 * 9 8 7 36 36 H 1.09001 * 109.49443 * 181.15303 * 9 8 7 37 37 H 1.08997 * 109.52675 * 182.48845 * 10 9 8 38 38 H 1.08995 * 109.52428 * 62.29514 * 10 9 8 39 39 H 1.09008 * 109.46707 * 53.95671 * 11 2 1 40 40 H 1.09002 * 109.47513 * 173.95378 * 11 2 1 41 41 H 0.97001 * 119.99591 * 0.02562 * 14 12 11 42 42 H 0.97001 * 120.00103 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 1.3182 5 6 2.1793 3.4860 1.3181 6 6 3.7105 3.4476 1.3026 7 6 4.2499 4.8782 1.3820 8 8 3.7514 5.5088 2.5634 9 6 2.3272 5.6156 2.6111 10 6 1.7105 4.2148 2.5812 11 6 1.9955 -0.7660 -1.1375 12 6 1.6369 -2.2204 -0.9728 13 8 1.0053 -2.5832 -0.0029 14 7 2.0180 -3.1180 -1.9032 15 6 1.6923 -4.4413 -1.7531 16 1 1.1299 -4.7643 -0.8895 17 6 2.0847 -5.3665 -2.7125 18 7 2.7685 -4.9734 -3.7635 19 14 1.6402 -7.1694 -2.5083 20 1 0.1631 -7.3121 -2.4554 21 1 2.1719 -7.9436 -3.6585 22 1 2.2329 -7.6856 -1.2483 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.5612 1.9273 -0.8310 27 1 3.0797 1.3443 -0.1082 28 1 2.0658 1.5015 2.1492 29 1 0.5471 2.0845 1.4265 30 1 1.8190 4.0159 0.4363 31 1 4.0692 2.8751 2.1580 32 1 4.0538 2.9795 0.3800 33 1 3.9243 5.4386 0.5056 34 1 5.3391 4.8546 1.4145 35 1 1.9763 6.1857 1.7509 36 1 2.0311 6.1236 3.5289 37 1 0.6236 4.2953 2.5729 38 1 2.0287 3.6578 3.4623 39 1 1.5611 -0.3872 -2.0628 40 1 3.0797 -0.6612 -1.1756 41 1 2.5234 -2.8279 -2.6786 42 1 3.0422 -5.6193 -4.4335 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120534917.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:21 Heat of formation + Delta-G solvation = -115.477332 kcal Electronic energy + Delta-G solvation = -20772.895435 eV Core-core repulsion = 17558.446893 eV Total energy + Delta-G solvation = -3214.448542 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.57548 -40.19207 -38.15330 -36.04352 -35.48311 -33.27968 -32.01558 -30.95348 -29.16251 -27.26566 -26.22743 -24.46769 -23.89813 -21.76038 -21.03517 -20.83651 -19.84817 -17.82211 -17.16132 -16.92991 -16.64103 -16.56897 -16.40744 -15.86212 -15.61499 -15.33955 -15.21455 -15.06360 -14.57371 -13.94292 -13.78052 -13.51040 -13.21335 -13.06312 -12.98710 -12.86070 -12.54348 -12.47548 -12.38538 -12.21972 -12.12382 -11.97812 -11.72411 -11.45368 -11.13719 -11.11036 -10.41410 -10.25807 -10.00000 -9.17747 -8.46176 -5.94893 1.39665 1.41301 1.52327 2.05958 2.28645 2.78167 3.02965 3.20544 3.42801 3.74220 3.81899 3.96096 4.12748 4.19119 4.24111 4.34200 4.36278 4.44294 4.51070 4.52174 4.60013 4.66636 4.69087 4.71910 4.81816 4.84410 4.92518 4.99239 5.09843 5.14270 5.21934 5.25709 5.34168 5.41195 5.53438 5.90276 6.09043 6.26438 6.31837 6.61523 7.13424 7.57027 8.13264 8.71141 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.047614 B = 0.002888 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.920243 B = 9694.493266 C =10006.545238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.541 5.541 3 C 0.057 3.943 4 C -0.101 4.101 5 C -0.082 4.082 6 C -0.152 4.152 7 C 0.058 3.942 8 O -0.408 6.408 9 C 0.058 3.942 10 C -0.149 4.149 11 C 0.057 3.943 12 C 0.441 3.559 13 O -0.615 6.615 14 N -0.575 5.575 15 C -0.333 4.333 16 H 0.078 0.922 17 C -0.013 4.013 18 N -0.921 5.921 19 Si 0.992 3.008 20 H -0.272 1.272 21 H -0.270 1.270 22 H -0.272 1.272 23 H 0.028 0.972 24 H 0.052 0.948 25 H 0.079 0.921 26 H 0.043 0.957 27 H 0.081 0.919 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.060 0.940 34 H 0.099 0.901 35 H 0.060 0.940 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.108 0.892 41 H 0.396 0.604 42 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.698 20.956 5.630 21.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.266 5.266 3 C -0.070 4.070 4 C -0.139 4.139 5 C -0.101 4.101 6 C -0.190 4.190 7 C -0.018 4.018 8 O -0.328 6.328 9 C -0.019 4.019 10 C -0.186 4.186 11 C -0.074 4.074 12 C 0.228 3.772 13 O -0.501 6.501 14 N -0.213 5.213 15 C -0.463 4.463 16 H 0.096 0.904 17 C -0.213 4.213 18 N -0.562 5.562 19 Si 0.816 3.184 20 H -0.197 1.197 21 H -0.194 1.194 22 H -0.198 1.198 23 H 0.046 0.954 24 H 0.071 0.929 25 H 0.097 0.903 26 H 0.061 0.939 27 H 0.099 0.901 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.078 0.922 34 H 0.117 0.883 35 H 0.078 0.922 36 H 0.120 0.880 37 H 0.102 0.898 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.126 0.874 41 H 0.230 0.770 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.634 20.448 6.679 21.521 hybrid contribution -0.365 -0.814 -1.320 1.593 sum 0.269 19.634 5.359 20.354 Atomic orbital electron populations 1.22422 0.87104 1.02023 1.00519 1.61532 1.08767 1.14053 1.42207 1.22276 1.00513 0.86446 0.97804 1.21530 1.00974 0.94600 0.96793 1.21141 0.95198 0.95167 0.98632 1.22294 0.95747 0.97831 1.03090 1.22697 0.99642 0.92009 0.87490 1.87893 1.22200 1.80071 1.42610 1.22704 0.80165 0.96014 1.02986 1.22218 1.01613 0.96765 0.98040 1.21739 1.02001 0.90218 0.93415 1.20806 0.83699 0.88823 0.83865 1.90457 1.45185 1.81467 1.33001 1.41939 1.50106 1.07052 1.22158 1.19619 1.34504 0.84088 1.08058 0.90368 1.26033 0.96261 1.04332 0.94660 1.69665 1.38148 1.37274 1.11156 0.84999 0.78634 0.76752 0.78014 1.19687 1.19433 1.19756 0.95357 0.92893 0.90273 0.93924 0.90060 0.92566 0.91692 0.90179 0.92158 0.89928 0.92166 0.88268 0.92200 0.88026 0.89758 0.92049 0.91623 0.87388 0.77043 0.91295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.89 8.96 127.69 1.14 2.03 16 2 N -0.54 -17.78 4.50 -927.04 -4.17 -21.95 16 3 C 0.06 1.33 4.72 86.30 0.41 1.73 16 4 C -0.10 -2.08 4.61 30.59 0.14 -1.94 16 5 C -0.08 -1.33 2.27 -10.68 -0.02 -1.35 16 6 C -0.15 -2.47 5.10 30.68 0.16 -2.32 16 7 C 0.06 0.88 6.84 72.01 0.49 1.38 16 8 O -0.41 -7.81 10.76 -148.98 -1.60 -9.42 16 9 C 0.06 0.83 6.84 72.01 0.49 1.32 16 10 C -0.15 -2.23 5.42 30.68 0.17 -2.06 16 11 C 0.06 2.03 5.45 85.56 0.47 2.50 16 12 C 0.44 21.38 7.47 87.66 0.66 22.04 16 13 O -0.62 -34.53 13.91 -3.06 -0.04 -34.57 16 14 N -0.57 -29.95 5.29 -306.99 -1.62 -31.58 16 15 C -0.33 -19.14 9.68 84.04 0.81 -18.32 16 16 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 17 C -0.01 -0.71 5.50 84.93 0.47 -0.25 16 18 N -0.92 -50.10 13.05 21.66 0.28 -49.82 16 19 Si 0.99 43.27 29.55 68.60 2.03 45.29 16 20 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 21 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 22 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 23 H 0.03 0.81 8.14 -2.38 -0.02 0.79 16 24 H 0.05 2.18 5.83 -2.39 -0.01 2.17 16 25 H 0.08 2.23 6.47 -2.38 -0.02 2.21 16 26 H 0.04 0.89 8.12 -2.39 -0.02 0.88 16 27 H 0.08 1.77 6.45 -2.39 -0.02 1.75 16 28 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.06 1.33 6.55 -2.38 -0.02 1.31 16 30 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.08 1.23 6.75 -2.38 -0.02 1.21 16 33 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 34 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.07 2.08 8.12 -2.38 -0.02 2.06 16 40 H 0.11 3.37 7.93 -2.39 -0.02 3.35 16 41 H 0.40 19.54 7.90 -92.71 -0.73 18.80 16 42 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -67.86 332.28 0.52 -67.34 By element: Atomic # 1 Polarization: 29.67 SS G_CDS: 0.27 Total: 29.94 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: 5.38 Total: 4.76 kcal Atomic # 7 Polarization: -97.84 SS G_CDS: -5.51 Total: -103.35 kcal Atomic # 8 Polarization: -42.34 SS G_CDS: -1.65 Total: -43.99 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Total: -67.86 0.52 -67.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120534917.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.136 kcal (2) G-P(sol) polarization free energy of solvation -67.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds