Wall clock time and date at job start Mon Mar 30 2020 01:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21283 * 119.99672 * 2 1 4 4 N 1.34769 * 119.99780 * 179.97438 * 2 1 3 5 5 C 1.46508 * 120.00134 * 179.97438 * 4 2 1 6 6 C 1.52992 * 109.47454 * 179.97438 * 5 4 2 7 7 H 1.08995 * 109.50698 * 305.09448 * 6 5 4 8 8 C 1.53090 * 109.50858 * 184.99938 * 6 5 4 9 9 N 1.47009 * 109.26111 * 183.21903 * 8 6 5 10 10 C 1.46906 * 111.00252 * 182.39276 * 9 8 6 11 11 C 1.53000 * 109.47072 * 170.00094 * 10 9 8 12 12 C 1.52996 * 109.47188 * 180.02562 * 11 10 9 13 13 C 1.50695 * 109.47567 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99782 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00401 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99940 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00290 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47066 * 59.99502 * 17 15 13 19 19 H 1.48496 * 109.47389 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47167 * 300.00017 * 17 15 13 21 21 C 1.47020 * 110.75180 * 58.61704 * 9 8 6 22 22 C 1.53097 * 109.25663 * 301.38207 * 21 9 8 23 23 O 1.43021 * 109.25605 * 56.85187 * 22 21 9 24 24 H 1.08997 * 109.47040 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46928 * 300.00279 * 1 2 3 26 26 H 1.08998 * 109.46949 * 59.99758 * 1 2 3 27 27 H 0.96996 * 120.00584 * 0.02562 * 4 2 1 28 28 H 1.09007 * 109.46658 * 59.99923 * 5 4 2 29 29 H 1.08994 * 109.46626 * 300.00753 * 5 4 2 30 30 H 1.08999 * 109.51016 * 63.28280 * 8 6 5 31 31 H 1.09001 * 109.51058 * 303.15305 * 8 6 5 32 32 H 1.08993 * 109.47164 * 289.99947 * 10 9 8 33 33 H 1.08996 * 109.46920 * 49.99981 * 10 9 8 34 34 H 1.09002 * 109.46936 * 299.99708 * 11 10 9 35 35 H 1.08996 * 109.47340 * 60.00144 * 11 10 9 36 36 H 1.08999 * 109.47452 * 300.00348 * 12 11 10 37 37 H 1.09012 * 109.47215 * 59.99738 * 12 11 10 38 38 H 0.96999 * 120.00082 * 180.02562 * 16 15 13 39 39 H 1.08998 * 109.50492 * 61.31935 * 21 9 8 40 40 H 1.09007 * 109.50106 * 181.45086 * 21 9 8 41 41 H 1.08995 * 109.50808 * 296.91455 * 22 21 9 42 42 H 1.09004 * 109.50466 * 176.78032 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0000 6 6 4.1559 -2.6097 0.0014 7 1 3.7206 -3.1488 0.8428 8 6 5.6817 -2.6124 0.1265 9 7 6.1721 -3.9961 0.0498 10 6 7.6300 -4.0484 0.2228 11 6 8.0723 -5.5039 0.3866 12 6 9.5905 -5.5583 0.5675 13 6 10.0261 -6.9918 0.7294 14 1 9.2933 -7.7848 0.7062 15 6 11.3601 -7.2910 0.9084 16 7 12.2524 -6.3254 0.9373 17 14 11.9001 -9.0680 1.1085 18 1 11.5182 -9.8406 -0.1009 19 1 13.3737 -9.1208 1.2841 20 1 11.2377 -9.6555 2.3006 21 6 5.7693 -4.6220 -1.2181 22 6 4.2425 -4.5992 -1.3298 23 8 3.7818 -3.2496 -1.2218 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.6959 -2.0072 0.0005 28 1 4.0096 -0.6528 0.8895 29 1 4.0088 -0.6539 -0.8904 30 1 5.9692 -2.1769 1.0835 31 1 6.1145 -2.0273 -0.6849 32 1 8.1155 -3.6175 -0.6528 33 1 7.9111 -3.4812 1.1101 34 1 7.5868 -5.9348 1.2623 35 1 7.7912 -6.0711 -0.5007 36 1 10.0764 -5.1272 -0.3078 37 1 9.8713 -4.9911 1.4551 38 1 13.1910 -6.5359 1.0628 39 1 6.2035 -4.0690 -2.0510 40 1 6.1207 -5.6535 -1.2425 41 1 3.8100 -5.1968 -0.5274 42 1 3.9419 -5.0104 -2.2935 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172191204.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:58 Heat of formation + Delta-G solvation = -95.545054 kcal Electronic energy + Delta-G solvation = -20562.752375 eV Core-core repulsion = 17349.168161 eV Total energy + Delta-G solvation = -3213.584214 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.15968 -39.38130 -36.37874 -35.04792 -33.59143 -32.14208 -31.35241 -30.07787 -28.26138 -26.44794 -24.67121 -23.42301 -21.99382 -21.08118 -20.26222 -19.92440 -17.26488 -16.78156 -16.55477 -16.37992 -15.93262 -15.46744 -15.20306 -14.68078 -14.65013 -14.37567 -13.84049 -13.64140 -13.44803 -13.32385 -12.95052 -12.39466 -12.29074 -12.23506 -11.82893 -11.64036 -11.41602 -11.27922 -10.86036 -10.72836 -10.56125 -10.54126 -10.19375 -9.80537 -9.65225 -9.36514 -9.34716 -9.08009 -8.35848 -8.25212 -6.00964 -4.03415 2.38756 2.91366 3.32344 3.36802 3.39116 3.47193 3.90285 4.45313 4.52256 4.63444 4.74372 4.85732 4.90778 4.98045 5.06500 5.16425 5.24827 5.33338 5.34900 5.41380 5.46621 5.53711 5.67228 5.73972 5.82426 5.87688 5.97216 6.11927 6.23948 6.61822 6.67038 6.92865 7.03555 7.19338 7.22288 7.23939 7.65737 7.80276 7.95357 7.98805 8.41693 9.03431 9.60597 11.10419 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.050540 B = 0.002699 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.880705 B =10372.954153 C =10697.070395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.509 3.491 3 O -0.552 6.552 4 N -0.723 5.723 5 C 0.127 3.873 6 C 0.084 3.916 7 H 0.074 0.926 8 C 0.025 3.975 9 N -0.536 5.536 10 C 0.056 3.944 11 C -0.104 4.104 12 C 0.022 3.978 13 C -0.520 4.520 14 H 0.054 0.946 15 C 0.056 3.944 16 N -0.896 5.896 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.013 3.987 22 C 0.066 3.934 23 O -0.383 6.383 24 H 0.075 0.925 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.404 0.596 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.044 0.956 32 H 0.031 0.969 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.047 0.953 36 H 0.013 0.987 37 H 0.016 0.984 38 H 0.261 0.739 39 H 0.041 0.959 40 H 0.095 0.905 41 H 0.060 0.940 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.611 8.112 -2.833 24.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.296 3.704 3 O -0.430 6.430 4 N -0.375 5.375 5 C 0.002 3.998 6 C 0.025 3.975 7 H 0.092 0.908 8 C -0.104 4.104 9 N -0.261 5.261 10 C -0.071 4.071 11 C -0.142 4.142 12 C -0.016 4.016 13 C -0.558 4.558 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.535 5.535 17 Si 0.720 3.280 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.115 4.115 22 C -0.011 4.011 23 O -0.302 6.302 24 H 0.095 0.905 25 H 0.112 0.888 26 H 0.112 0.888 27 H 0.239 0.761 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.032 0.968 37 H 0.034 0.966 38 H 0.071 0.929 39 H 0.059 0.941 40 H 0.113 0.887 41 H 0.078 0.922 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -22.291 8.730 -2.573 24.078 hybrid contribution 0.856 -1.131 -0.380 1.468 sum -21.435 7.599 -2.953 22.934 Atomic orbital electron populations 1.21836 0.91639 1.04230 1.05260 1.20822 0.90666 0.83400 0.75555 1.90735 1.70812 1.31454 1.49949 1.46023 1.07250 1.08987 1.75286 1.21358 0.80139 0.94913 1.03343 1.22345 0.94435 0.92653 0.88047 0.90803 1.22644 0.94308 0.91027 1.02423 1.62302 1.14752 1.15625 1.33402 1.22338 0.84062 1.00345 1.00340 1.21649 0.99677 0.92192 1.00659 1.19068 0.88467 0.97035 0.96999 1.21195 0.92401 0.92743 1.49468 0.92744 1.25033 0.96874 0.97193 0.95423 1.69953 1.01655 1.31693 1.50244 0.86650 0.77410 0.85216 0.78675 1.20270 1.21299 1.20215 1.22843 0.96013 1.01748 0.90891 1.22696 0.93238 0.82906 1.02228 1.87966 1.76803 1.27047 1.38426 0.90549 0.88774 0.88760 0.76083 0.89745 0.90585 0.89427 0.93808 0.95050 0.90954 0.92555 0.93474 0.96824 0.96586 0.92947 0.94096 0.88700 0.92209 0.88457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.91 10.39 36.01 0.37 -0.54 16 2 C 0.51 4.97 7.94 -10.99 -0.09 4.89 16 3 O -0.55 -7.98 17.10 5.56 0.09 -7.89 16 4 N -0.72 -6.15 5.51 -60.29 -0.33 -6.48 16 5 C 0.13 1.24 5.34 -4.04 -0.02 1.22 16 6 C 0.08 0.85 2.84 -26.69 -0.08 0.78 16 7 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 8 C 0.03 0.30 4.93 -3.72 -0.02 0.28 16 9 N -0.54 -7.65 4.73 -234.31 -1.11 -8.75 16 10 C 0.06 0.95 4.96 -3.82 -0.02 0.93 16 11 C -0.10 -2.10 5.09 -26.73 -0.14 -2.24 16 12 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 13 C -0.52 -14.69 9.11 -34.44 -0.31 -15.01 16 14 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 17 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 C 0.01 0.17 5.44 -3.71 -0.02 0.15 16 22 C 0.07 0.69 7.01 37.21 0.26 0.95 16 23 O -0.38 -4.27 10.42 -35.23 -0.37 -4.64 16 24 H 0.08 0.23 7.91 -51.93 -0.41 -0.18 16 25 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.40 2.54 8.31 -40.82 -0.34 2.20 16 28 H 0.08 0.82 8.14 -51.92 -0.42 0.39 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.09 0.98 8.09 -51.93 -0.42 0.56 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.03 0.54 8.12 -51.93 -0.42 0.12 16 33 H 0.07 1.22 8.04 -51.93 -0.42 0.80 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.05 0.93 6.52 -51.93 -0.34 0.59 16 36 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.09 1.28 6.38 -51.93 -0.33 0.95 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 342.49 15.07 5.16 5.16 Total: -1.00 -33.37 342.49 -8.42 -41.79 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -7.29 Total: -2.90 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -0.29 Total: -6.66 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: -0.70 Total: -41.47 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: -0.27 Total: -12.53 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.37 -8.42 -41.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172191204.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.758 kcal (2) G-P(sol) polarization free energy of solvation -33.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds