Wall clock time and date at job start Mon Mar 30 2020 01:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21283 * 119.99672 * 2 1 4 4 N 1.34769 * 119.99780 * 179.97438 * 2 1 3 5 5 C 1.46508 * 120.00134 * 179.97438 * 4 2 1 6 6 C 1.52992 * 109.47454 * 179.97438 * 5 4 2 7 7 H 1.08995 * 109.50698 * 305.09448 * 6 5 4 8 8 C 1.53090 * 109.50858 * 184.99938 * 6 5 4 9 9 N 1.47009 * 109.26111 * 183.21903 * 8 6 5 10 10 C 1.46906 * 111.00252 * 182.39276 * 9 8 6 11 11 C 1.53000 * 109.47072 * 170.00094 * 10 9 8 12 12 C 1.52996 * 109.47188 * 180.02562 * 11 10 9 13 13 C 1.50695 * 109.47567 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99782 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00401 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99940 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00290 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47066 * 59.99502 * 17 15 13 19 19 H 1.48496 * 109.47389 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47167 * 300.00017 * 17 15 13 21 21 C 1.47020 * 110.75180 * 58.61704 * 9 8 6 22 22 C 1.53097 * 109.25663 * 301.38207 * 21 9 8 23 23 O 1.43021 * 109.25605 * 56.85187 * 22 21 9 24 24 H 1.08997 * 109.47040 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46928 * 300.00279 * 1 2 3 26 26 H 1.08998 * 109.46949 * 59.99758 * 1 2 3 27 27 H 0.96996 * 120.00584 * 0.02562 * 4 2 1 28 28 H 1.09007 * 109.46658 * 59.99923 * 5 4 2 29 29 H 1.08994 * 109.46626 * 300.00753 * 5 4 2 30 30 H 1.08999 * 109.51016 * 63.28280 * 8 6 5 31 31 H 1.09001 * 109.51058 * 303.15305 * 8 6 5 32 32 H 1.08993 * 109.47164 * 289.99947 * 10 9 8 33 33 H 1.08996 * 109.46920 * 49.99981 * 10 9 8 34 34 H 1.09002 * 109.46936 * 299.99708 * 11 10 9 35 35 H 1.08996 * 109.47340 * 60.00144 * 11 10 9 36 36 H 1.08999 * 109.47452 * 300.00348 * 12 11 10 37 37 H 1.09012 * 109.47215 * 59.99738 * 12 11 10 38 38 H 0.96999 * 120.00082 * 180.02562 * 16 15 13 39 39 H 1.08998 * 109.50492 * 61.31935 * 21 9 8 40 40 H 1.09007 * 109.50106 * 181.45086 * 21 9 8 41 41 H 1.08995 * 109.50808 * 296.91455 * 22 21 9 42 42 H 1.09004 * 109.50466 * 176.78032 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0000 6 6 4.1559 -2.6097 0.0014 7 1 3.7206 -3.1488 0.8428 8 6 5.6817 -2.6124 0.1265 9 7 6.1721 -3.9961 0.0498 10 6 7.6300 -4.0484 0.2228 11 6 8.0723 -5.5039 0.3866 12 6 9.5905 -5.5583 0.5675 13 6 10.0261 -6.9918 0.7294 14 1 9.2933 -7.7848 0.7062 15 6 11.3601 -7.2910 0.9084 16 7 12.2524 -6.3254 0.9373 17 14 11.9001 -9.0680 1.1085 18 1 11.5182 -9.8406 -0.1009 19 1 13.3737 -9.1208 1.2841 20 1 11.2377 -9.6555 2.3006 21 6 5.7693 -4.6220 -1.2181 22 6 4.2425 -4.5992 -1.3298 23 8 3.7818 -3.2496 -1.2218 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.6959 -2.0072 0.0005 28 1 4.0096 -0.6528 0.8895 29 1 4.0088 -0.6539 -0.8904 30 1 5.9692 -2.1769 1.0835 31 1 6.1145 -2.0273 -0.6849 32 1 8.1155 -3.6175 -0.6528 33 1 7.9111 -3.4812 1.1101 34 1 7.5868 -5.9348 1.2623 35 1 7.7912 -6.0711 -0.5007 36 1 10.0764 -5.1272 -0.3078 37 1 9.8713 -4.9911 1.4551 38 1 13.1910 -6.5359 1.0628 39 1 6.2035 -4.0690 -2.0510 40 1 6.1207 -5.6535 -1.2425 41 1 3.8100 -5.1968 -0.5274 42 1 3.9419 -5.0104 -2.2935 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172191204.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:58 Heat of formation + Delta-G solvation = -120.746484 kcal Electronic energy + Delta-G solvation = -20563.845191 eV Core-core repulsion = 17349.168161 eV Total energy + Delta-G solvation = -3214.677030 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.04631 -40.27046 -37.59703 -35.92328 -35.48034 -33.36337 -32.80779 -30.71552 -29.57720 -27.81237 -25.95843 -24.63565 -23.40063 -21.97240 -21.53905 -21.15056 -18.52923 -17.97372 -17.63635 -17.33923 -17.06330 -16.53085 -16.41000 -16.20282 -15.70325 -15.48773 -15.13764 -14.87688 -14.38967 -14.24856 -14.03887 -13.67000 -13.46202 -13.21745 -13.02942 -12.89839 -12.79132 -12.65696 -12.47338 -12.32012 -12.12286 -11.67921 -11.40595 -11.38149 -11.18362 -11.02310 -10.61430 -10.54507 -10.15632 -9.43095 -8.20573 -6.31832 1.39987 1.43110 1.51066 1.64724 2.19359 2.40628 2.63516 2.82245 3.12580 3.75635 3.80056 3.97164 4.00623 4.06410 4.08963 4.26387 4.29159 4.46540 4.52147 4.54918 4.60038 4.63396 4.67964 4.70236 4.80228 4.87183 4.94819 5.00780 5.05994 5.11220 5.23815 5.39224 5.50514 5.71630 5.84594 5.92208 5.97160 6.12605 6.25148 6.57294 6.85040 7.25643 7.37504 8.91153 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.050540 B = 0.002699 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.880705 B =10372.954153 C =10697.070395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.502 3.498 3 O -0.606 6.606 4 N -0.713 5.713 5 C 0.131 3.869 6 C 0.096 3.904 7 H 0.088 0.912 8 C 0.022 3.978 9 N -0.537 5.537 10 C 0.067 3.933 11 C -0.087 4.087 12 C 0.025 3.975 13 C -0.542 4.542 14 H 0.061 0.939 15 C -0.003 4.003 16 N -0.934 5.934 17 Si 0.966 3.034 18 H -0.266 1.266 19 H -0.284 1.284 20 H -0.266 1.266 21 C 0.009 3.991 22 C 0.072 3.928 23 O -0.389 6.389 24 H 0.105 0.895 25 H 0.102 0.898 26 H 0.100 0.900 27 H 0.418 0.582 28 H 0.085 0.915 29 H 0.058 0.942 30 H 0.096 0.904 31 H 0.036 0.964 32 H 0.022 0.978 33 H 0.071 0.929 34 H 0.055 0.945 35 H 0.052 0.948 36 H -0.012 1.012 37 H -0.009 1.009 38 H 0.263 0.737 39 H 0.031 0.969 40 H 0.088 0.912 41 H 0.070 0.930 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.801 6.677 -2.756 25.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.291 3.709 3 O -0.488 6.488 4 N -0.365 5.365 5 C 0.006 3.994 6 C 0.037 3.963 7 H 0.105 0.895 8 C -0.106 4.106 9 N -0.262 5.262 10 C -0.061 4.061 11 C -0.125 4.125 12 C -0.013 4.013 13 C -0.580 4.580 14 H 0.079 0.921 15 C -0.200 4.200 16 N -0.575 5.575 17 Si 0.790 3.210 18 H -0.191 1.191 19 H -0.209 1.209 20 H -0.191 1.191 21 C -0.119 4.119 22 C -0.005 4.005 23 O -0.308 6.308 24 H 0.124 0.876 25 H 0.121 0.879 26 H 0.118 0.882 27 H 0.255 0.745 28 H 0.103 0.897 29 H 0.077 0.923 30 H 0.114 0.886 31 H 0.054 0.946 32 H 0.041 0.959 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.006 0.994 37 H 0.010 0.990 38 H 0.072 0.928 39 H 0.050 0.950 40 H 0.107 0.893 41 H 0.088 0.912 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -24.524 7.261 -2.502 25.699 hybrid contribution 1.543 -0.660 -0.420 1.730 sum -22.981 6.600 -2.922 24.088 Atomic orbital electron populations 1.21862 0.87923 1.06404 1.05925 1.21657 0.92449 0.82630 0.74146 1.90712 1.72228 1.33340 1.52549 1.45975 1.06681 1.09543 1.74349 1.21212 0.81158 0.94463 1.02588 1.22247 0.92882 0.92865 0.88272 0.89456 1.22741 0.95726 0.89538 1.02639 1.62247 1.12482 1.17147 1.34312 1.22055 0.86179 0.97854 0.99998 1.21370 0.95732 0.94621 1.00753 1.18975 0.92077 0.95596 0.94628 1.21656 0.93001 0.93974 1.49390 0.92082 1.26014 0.96997 1.02126 0.94896 1.70093 1.02052 1.34214 1.51115 0.85487 0.76969 0.79292 0.79228 1.19097 1.20942 1.19061 1.22940 0.98114 1.00996 0.89855 1.22759 0.91009 0.82790 1.03914 1.87969 1.76604 1.27458 1.38814 0.87642 0.87899 0.88152 0.74476 0.89680 0.92347 0.88619 0.94597 0.95929 0.91034 0.92612 0.92962 0.99372 0.99011 0.92787 0.95022 0.89330 0.91154 0.86283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 10.39 71.24 0.74 -0.60 16 2 C 0.50 9.21 7.94 87.66 0.70 9.91 16 3 O -0.61 -17.63 17.10 -3.04 -0.05 -17.68 16 4 N -0.71 -10.86 5.51 -463.06 -2.55 -13.41 16 5 C 0.13 2.44 5.34 86.38 0.46 2.90 16 6 C 0.10 1.78 2.84 30.62 0.09 1.86 16 7 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 8 C 0.02 0.52 4.93 86.31 0.43 0.94 16 9 N -0.54 -14.82 4.73 -895.22 -4.23 -19.05 16 10 C 0.07 2.27 4.96 86.30 0.43 2.70 16 11 C -0.09 -3.54 5.09 30.59 0.16 -3.38 16 12 C 0.02 1.32 4.97 29.85 0.15 1.46 16 13 C -0.54 -30.93 9.11 25.60 0.23 -30.70 16 14 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 15 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 16 N -0.93 -57.26 13.29 21.45 0.28 -56.98 16 17 Si 0.97 44.19 29.54 68.60 2.03 46.22 16 18 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 19 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 20 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 21 C 0.01 0.22 5.44 86.31 0.47 0.69 16 22 C 0.07 1.33 7.01 72.01 0.50 1.83 16 23 O -0.39 -7.79 10.42 -148.98 -1.55 -9.34 16 24 H 0.10 0.25 7.91 -2.39 -0.02 0.23 16 25 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.42 4.06 8.31 -92.71 -0.77 3.29 16 28 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 29 H 0.06 1.31 8.14 -2.39 -0.02 1.30 16 30 H 0.10 2.05 8.09 -2.39 -0.02 2.03 16 31 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.02 0.80 8.12 -2.39 -0.02 0.78 16 33 H 0.07 2.43 8.04 -2.39 -0.02 2.41 16 34 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.05 2.06 6.52 -2.39 -0.02 2.04 16 36 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 37 H -0.01 -0.49 8.14 -2.38 -0.02 -0.50 16 38 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 39 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.09 2.30 6.38 -2.38 -0.02 2.28 16 41 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -73.07 342.49 -1.05 -74.11 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: 0.22 Total: 8.21 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: 4.81 Total: -12.08 kcal Atomic # 7 Polarization: -82.95 SS G_CDS: -6.50 Total: -89.44 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -1.60 Total: -27.02 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -73.07 -1.05 -74.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172191204.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.634 kcal (2) G-P(sol) polarization free energy of solvation -73.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds