Wall clock time and date at job start Mon Mar 30 2020 00:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47254 * 2 1 4 4 C 1.36936 * 120.00462 * 274.43667 * 3 2 1 5 5 H 1.08003 * 119.99788 * 337.82528 * 4 3 2 6 6 C 1.38803 * 120.00176 * 157.81400 * 4 3 2 7 7 N 1.31622 * 119.99984 * 7.88618 * 6 4 3 8 8 Si 1.86802 * 120.00258 * 187.88698 * 6 4 3 9 9 H 1.48496 * 109.47183 * 90.00132 * 8 6 4 10 10 H 1.48504 * 109.47034 * 210.00266 * 8 6 4 11 11 H 1.48504 * 109.46700 * 329.99785 * 8 6 4 12 12 C 1.46502 * 119.99764 * 94.44289 * 3 2 1 13 13 C 1.50697 * 109.47178 * 269.99813 * 12 3 2 14 14 O 1.21286 * 119.99834 * 0.02562 * 13 12 3 15 15 N 1.34771 * 120.00633 * 179.97438 * 13 12 3 16 16 C 1.47154 * 120.97584 * 359.72221 * 15 13 12 17 17 C 1.53720 * 108.16114 * 129.43318 * 16 15 13 18 18 H 1.08994 * 109.65405 * 292.56531 * 17 16 15 19 19 C 1.52999 * 109.44115 * 172.37197 * 17 16 15 20 20 O 1.42960 * 109.14928 * 52.53487 * 17 16 15 21 21 C 1.42957 * 114.16350 * 297.28831 * 20 17 16 22 22 H 1.09003 * 109.55427 * 182.52686 * 21 20 17 23 23 C 1.52994 * 109.51873 * 302.65706 * 21 20 17 24 24 C 1.47153 * 120.98722 * 180.02562 * 15 13 12 25 25 H 1.09003 * 109.46835 * 59.99832 * 1 2 3 26 26 H 1.08993 * 109.47206 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47183 * 299.99938 * 1 2 3 28 28 H 1.09006 * 109.47162 * 239.99896 * 2 1 3 29 29 H 1.09003 * 109.46835 * 120.00167 * 2 1 3 30 30 H 0.97005 * 120.00366 * 179.97438 * 7 6 4 31 31 H 1.09005 * 109.47457 * 29.99676 * 12 3 2 32 32 H 1.08995 * 109.47148 * 149.99936 * 12 3 2 33 33 H 1.09003 * 109.68152 * 249.20331 * 16 15 13 34 34 H 1.09000 * 109.68489 * 9.75716 * 16 15 13 35 35 H 1.09003 * 109.47229 * 300.38792 * 19 17 16 36 36 H 1.09005 * 109.47542 * 60.38596 * 19 17 16 37 37 H 1.08999 * 109.47177 * 180.38780 * 19 17 16 38 38 H 1.08994 * 109.47781 * 179.74550 * 23 21 20 39 39 H 1.09002 * 109.46944 * 299.75189 * 23 21 20 40 40 H 1.09000 * 109.46880 * 59.74388 * 23 21 20 41 41 H 1.09002 * 109.67800 * 350.23440 * 24 15 13 42 42 H 1.09000 * 109.68071 * 110.75532 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1601 2.0574 -1.1823 5 1 2.2662 1.5107 -2.1077 6 6 2.1672 3.4454 -1.1915 7 7 2.1943 4.1109 -0.0562 8 14 2.1384 4.3689 -2.8150 9 1 0.7311 4.6210 -3.2161 10 1 2.8487 5.6639 -2.6605 11 1 2.8128 3.5559 -3.8589 12 6 2.3552 2.0390 1.2650 13 6 1.1352 2.7368 1.8087 14 8 0.0874 2.6889 1.1998 15 7 1.2081 3.4132 2.9721 16 6 2.4664 3.4793 3.7322 17 6 2.7485 4.9533 4.0647 18 1 2.9694 5.5001 3.1480 19 6 3.9449 5.0413 5.0143 20 8 1.5969 5.5209 4.6935 21 6 0.4299 5.5415 3.8682 22 1 -0.3864 6.0276 4.4026 23 6 0.7280 6.3120 2.5804 24 6 0.0302 4.1018 3.5232 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.1996 5.0809 -0.0626 31 1 2.6972 1.2932 1.9826 32 1 3.1461 2.7695 1.0953 33 1 2.3696 2.9044 4.6533 34 1 3.2805 3.0750 3.1305 35 1 3.7235 4.4921 5.9295 36 1 4.8226 4.6083 4.5342 37 1 4.1411 6.0859 5.2558 38 1 -0.1608 6.3234 1.9497 39 1 1.0120 7.3351 2.8267 40 1 1.5455 5.8264 2.0475 41 1 -0.7698 4.1102 2.7829 42 1 -0.3077 3.5881 4.4232 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226668859.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:42 Heat of formation + Delta-G solvation = -46.676821 kcal Electronic energy + Delta-G solvation = -23209.623432 eV Core-core repulsion = 19998.158304 eV Total energy + Delta-G solvation = -3211.465128 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.71396 -37.64030 -35.32371 -33.69495 -33.08576 -31.78549 -29.92073 -29.05690 -27.34912 -26.14130 -24.93629 -23.51204 -22.25791 -20.53075 -19.67525 -18.33811 -16.79759 -16.23089 -16.12057 -15.35044 -14.94342 -14.74684 -14.35118 -13.88949 -13.68647 -13.51120 -12.89992 -12.67688 -12.46182 -12.19078 -12.06815 -11.81688 -11.68494 -11.50355 -11.35279 -11.15170 -10.98882 -10.90866 -10.76595 -10.71718 -10.39028 -10.04037 -10.00049 -9.86169 -9.69664 -9.47733 -8.76109 -8.19095 -7.56800 -6.77931 -5.79574 -3.17811 3.39415 3.45538 3.47706 3.83016 4.06437 4.27275 4.55519 5.06835 5.23310 5.35148 5.42323 5.45236 5.49131 5.54066 5.66194 5.75268 5.79115 5.95123 6.02163 6.11915 6.15671 6.20176 6.25289 6.32000 6.35355 6.44473 6.46828 6.53603 6.68867 6.78759 6.81519 7.06232 7.31401 7.37902 7.51234 7.54148 7.75977 8.35504 8.58971 9.20894 9.73019 9.88744 10.30450 11.27002 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.018008 B = 0.007924 C = 0.006795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.453484 B = 3532.912308 C = 4119.444290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.145 3.855 3 N -0.579 5.579 4 C -0.237 4.237 5 H 0.073 0.927 6 C 0.007 3.993 7 N -0.908 5.908 8 Si 0.908 3.092 9 H -0.290 1.290 10 H -0.293 1.293 11 H -0.282 1.282 12 C 0.168 3.832 13 C 0.538 3.462 14 O -0.535 6.535 15 N -0.628 5.628 16 C 0.096 3.904 17 C 0.068 3.932 18 H 0.072 0.928 19 C -0.141 4.141 20 O -0.382 6.382 21 C 0.079 3.921 22 H 0.098 0.902 23 C -0.181 4.181 24 C 0.089 3.911 25 H 0.050 0.950 26 H 0.024 0.976 27 H 0.056 0.944 28 H 0.041 0.959 29 H 0.035 0.965 30 H 0.251 0.749 31 H 0.023 0.977 32 H 0.119 0.881 33 H 0.057 0.943 34 H 0.091 0.909 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.049 0.951 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.029 0.607 9.819 10.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.019 3.981 3 N -0.300 5.300 4 C -0.366 4.366 5 H 0.091 0.909 6 C -0.189 4.189 7 N -0.555 5.555 8 Si 0.739 3.261 9 H -0.217 1.217 10 H -0.220 1.220 11 H -0.208 1.208 12 C 0.038 3.962 13 C 0.327 3.673 14 O -0.410 6.410 15 N -0.367 5.367 16 C -0.029 4.029 17 C 0.010 3.990 18 H 0.090 0.910 19 C -0.199 4.199 20 O -0.301 6.301 21 C 0.020 3.980 22 H 0.115 0.885 23 C -0.239 4.239 24 C -0.035 4.035 25 H 0.069 0.931 26 H 0.043 0.957 27 H 0.075 0.925 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.041 0.959 32 H 0.136 0.864 33 H 0.075 0.925 34 H 0.110 0.890 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.104 0.896 41 H 0.110 0.890 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.492 0.755 9.575 9.720 hybrid contribution -0.376 0.796 -1.072 1.387 sum 1.117 1.550 8.503 8.715 Atomic orbital electron populations 1.22324 0.99133 0.97785 1.02913 1.20852 0.92537 0.86555 0.98186 1.43817 1.73957 1.09848 1.02349 1.19234 1.42356 0.88901 0.86146 0.90917 1.24881 1.00618 0.96492 0.96882 1.69672 1.55873 1.06356 1.23641 0.86197 0.77552 0.79039 0.83335 1.21693 1.21967 1.20771 1.20765 0.94829 0.94801 0.85825 1.22125 0.91577 0.77091 0.76487 1.90478 1.32210 1.61874 1.56406 1.48353 1.09180 1.55313 1.23865 1.22206 0.88309 0.96205 0.96179 1.22567 0.86086 0.93770 0.96613 0.90961 1.21717 0.96194 1.02473 0.99473 1.87892 1.19081 1.82185 1.40958 1.22502 0.87846 0.95594 0.92036 0.88453 1.22352 1.04201 0.99549 0.97751 1.21952 0.91001 0.91872 0.98652 0.93084 0.95700 0.92476 0.94030 0.94693 0.93749 0.95941 0.86356 0.92522 0.89033 0.92114 0.90929 0.92117 0.92027 0.93162 0.89581 0.89041 0.92859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.47 9.66 37.16 0.36 -3.11 16 2 C 0.15 3.12 6.44 -4.04 -0.03 3.09 16 3 N -0.58 -14.39 2.07 -174.61 -0.36 -14.75 16 4 C -0.24 -6.41 9.70 -15.06 -0.15 -6.55 16 5 H 0.07 1.94 7.84 -52.48 -0.41 1.53 16 6 C 0.01 0.20 5.41 -17.43 -0.09 0.11 16 7 N -0.91 -24.15 8.21 55.49 0.46 -23.69 16 8 Si 0.91 22.04 29.56 -169.99 -5.03 17.01 16 9 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 C 0.17 3.86 3.84 -5.19 -0.02 3.84 16 13 C 0.54 12.53 5.67 -10.99 -0.06 12.46 16 14 O -0.54 -14.51 13.36 5.55 0.07 -14.44 16 15 N -0.63 -12.21 2.53 -171.99 -0.44 -12.64 16 16 C 0.10 1.53 5.85 -3.31 -0.02 1.51 16 17 C 0.07 1.03 3.03 -26.36 -0.08 0.95 16 18 H 0.07 1.23 6.25 -51.93 -0.32 0.91 16 19 C -0.14 -1.65 9.57 37.16 0.36 -1.29 16 20 O -0.38 -6.14 10.22 -35.23 -0.36 -6.50 16 21 C 0.08 1.25 3.93 -26.56 -0.10 1.15 16 22 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 23 C -0.18 -3.12 8.81 37.15 0.33 -2.79 16 24 C 0.09 1.59 6.02 -3.51 -0.02 1.57 16 25 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 1.33 6.38 -51.93 -0.33 1.00 16 28 H 0.04 0.85 8.08 -51.93 -0.42 0.43 16 29 H 0.03 0.67 7.84 -51.93 -0.41 0.27 16 30 H 0.25 6.70 8.06 -40.82 -0.33 6.37 16 31 H 0.02 0.46 7.72 -51.93 -0.40 0.06 16 32 H 0.12 2.89 5.76 -51.93 -0.30 2.59 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.09 1.46 6.05 -51.93 -0.31 1.14 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.09 1.73 5.85 -51.93 -0.30 1.43 16 41 H 0.09 1.82 7.08 -51.93 -0.37 1.46 16 42 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 323.53 15.07 4.88 4.88 Total: -1.00 -30.30 323.53 -7.24 -37.54 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -6.93 Total: 1.66 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: 0.47 Total: 10.93 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: -0.34 Total: -51.08 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.29 Total: -20.94 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.01 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.30 -7.24 -37.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226668859.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.135 kcal (2) G-P(sol) polarization free energy of solvation -30.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds