Wall clock time and date at job start Mon Mar 30 2020 00:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47254 * 2 1 4 4 C 1.36936 * 120.00462 * 274.43667 * 3 2 1 5 5 H 1.08003 * 119.99788 * 337.82528 * 4 3 2 6 6 C 1.38803 * 120.00176 * 157.81400 * 4 3 2 7 7 N 1.31622 * 119.99984 * 7.88618 * 6 4 3 8 8 Si 1.86802 * 120.00258 * 187.88698 * 6 4 3 9 9 H 1.48496 * 109.47183 * 90.00132 * 8 6 4 10 10 H 1.48504 * 109.47034 * 210.00266 * 8 6 4 11 11 H 1.48504 * 109.46700 * 329.99785 * 8 6 4 12 12 C 1.46502 * 119.99764 * 94.44289 * 3 2 1 13 13 C 1.50697 * 109.47178 * 269.99813 * 12 3 2 14 14 O 1.21286 * 119.99834 * 0.02562 * 13 12 3 15 15 N 1.34771 * 120.00633 * 179.97438 * 13 12 3 16 16 C 1.47154 * 120.97584 * 359.72221 * 15 13 12 17 17 C 1.53720 * 108.16114 * 129.43318 * 16 15 13 18 18 H 1.08994 * 109.65405 * 292.56531 * 17 16 15 19 19 C 1.52999 * 109.44115 * 172.37197 * 17 16 15 20 20 O 1.42960 * 109.14928 * 52.53487 * 17 16 15 21 21 C 1.42957 * 114.16350 * 297.28831 * 20 17 16 22 22 H 1.09003 * 109.55427 * 182.52686 * 21 20 17 23 23 C 1.52994 * 109.51873 * 302.65706 * 21 20 17 24 24 C 1.47153 * 120.98722 * 180.02562 * 15 13 12 25 25 H 1.09003 * 109.46835 * 59.99832 * 1 2 3 26 26 H 1.08993 * 109.47206 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47183 * 299.99938 * 1 2 3 28 28 H 1.09006 * 109.47162 * 239.99896 * 2 1 3 29 29 H 1.09003 * 109.46835 * 120.00167 * 2 1 3 30 30 H 0.97005 * 120.00366 * 179.97438 * 7 6 4 31 31 H 1.09005 * 109.47457 * 29.99676 * 12 3 2 32 32 H 1.08995 * 109.47148 * 149.99936 * 12 3 2 33 33 H 1.09003 * 109.68152 * 249.20331 * 16 15 13 34 34 H 1.09000 * 109.68489 * 9.75716 * 16 15 13 35 35 H 1.09003 * 109.47229 * 300.38792 * 19 17 16 36 36 H 1.09005 * 109.47542 * 60.38596 * 19 17 16 37 37 H 1.08999 * 109.47177 * 180.38780 * 19 17 16 38 38 H 1.08994 * 109.47781 * 179.74550 * 23 21 20 39 39 H 1.09002 * 109.46944 * 299.75189 * 23 21 20 40 40 H 1.09000 * 109.46880 * 59.74388 * 23 21 20 41 41 H 1.09002 * 109.67800 * 350.23440 * 24 15 13 42 42 H 1.09000 * 109.68071 * 110.75532 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1601 2.0574 -1.1823 5 1 2.2662 1.5107 -2.1077 6 6 2.1672 3.4454 -1.1915 7 7 2.1943 4.1109 -0.0562 8 14 2.1384 4.3689 -2.8150 9 1 0.7311 4.6210 -3.2161 10 1 2.8487 5.6639 -2.6605 11 1 2.8128 3.5559 -3.8589 12 6 2.3552 2.0390 1.2650 13 6 1.1352 2.7368 1.8087 14 8 0.0874 2.6889 1.1998 15 7 1.2081 3.4132 2.9721 16 6 2.4664 3.4793 3.7322 17 6 2.7485 4.9533 4.0647 18 1 2.9694 5.5001 3.1480 19 6 3.9449 5.0413 5.0143 20 8 1.5969 5.5209 4.6935 21 6 0.4299 5.5415 3.8682 22 1 -0.3864 6.0276 4.4026 23 6 0.7280 6.3120 2.5804 24 6 0.0302 4.1018 3.5232 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.1996 5.0809 -0.0626 31 1 2.6972 1.2932 1.9826 32 1 3.1461 2.7695 1.0953 33 1 2.3696 2.9044 4.6533 34 1 3.2805 3.0750 3.1305 35 1 3.7235 4.4921 5.9295 36 1 4.8226 4.6083 4.5342 37 1 4.1411 6.0859 5.2558 38 1 -0.1608 6.3234 1.9497 39 1 1.0120 7.3351 2.8267 40 1 1.5455 5.8264 2.0475 41 1 -0.7698 4.1102 2.7829 42 1 -0.3077 3.5881 4.4232 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226668859.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:41 Heat of formation + Delta-G solvation = -64.939065 kcal Electronic energy + Delta-G solvation = -23210.415342 eV Core-core repulsion = 19998.158304 eV Total energy + Delta-G solvation = -3212.257038 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.16168 -39.30072 -37.12818 -35.27573 -34.35181 -33.72266 -31.32774 -30.74969 -29.06428 -27.55919 -26.48305 -25.32296 -23.55952 -22.26385 -21.16143 -19.89603 -18.69864 -17.74118 -17.54286 -17.08878 -16.59062 -16.23064 -15.72363 -15.59238 -15.41249 -15.15604 -14.54106 -14.26664 -13.93631 -13.78496 -13.46292 -13.16191 -13.09899 -12.94277 -12.90798 -12.82756 -12.75738 -12.58593 -12.29280 -12.25847 -12.03067 -11.96232 -11.77338 -11.44308 -11.34116 -10.85969 -10.74279 -10.08673 -9.10297 -8.70110 -7.82057 -5.20594 1.42080 1.47800 1.51483 2.31734 2.43852 2.65629 2.82965 3.38600 3.70293 3.81369 3.92435 4.10499 4.15629 4.25122 4.40136 4.44493 4.48580 4.50503 4.69336 4.73840 4.75010 4.78445 4.86812 4.89816 4.95458 5.00716 5.04085 5.08671 5.15450 5.30025 5.32408 5.41376 5.45521 5.64934 5.69384 5.94823 6.27151 6.39262 6.90265 7.22414 7.84515 8.07392 8.32408 9.20131 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.018008 B = 0.007924 C = 0.006795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.453484 B = 3532.912308 C = 4119.444290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.140 3.860 3 N -0.596 5.596 4 C -0.251 4.251 5 H 0.069 0.931 6 C -0.035 4.035 7 N -0.908 5.908 8 Si 0.956 3.044 9 H -0.307 1.307 10 H -0.292 1.292 11 H -0.271 1.271 12 C 0.170 3.830 13 C 0.537 3.463 14 O -0.582 6.582 15 N -0.628 5.628 16 C 0.092 3.908 17 C 0.069 3.931 18 H 0.048 0.952 19 C -0.134 4.134 20 O -0.380 6.380 21 C 0.086 3.914 22 H 0.128 0.872 23 C -0.174 4.174 24 C 0.088 3.912 25 H 0.019 0.981 26 H 0.061 0.939 27 H 0.033 0.967 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.243 0.757 31 H 0.051 0.949 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.066 0.934 38 H 0.047 0.953 39 H 0.067 0.933 40 H 0.055 0.945 41 H 0.064 0.936 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.830 0.290 11.532 11.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.015 3.985 3 N -0.316 5.316 4 C -0.381 4.381 5 H 0.086 0.914 6 C -0.230 4.230 7 N -0.556 5.556 8 Si 0.787 3.213 9 H -0.235 1.235 10 H -0.219 1.219 11 H -0.196 1.196 12 C 0.040 3.960 13 C 0.327 3.673 14 O -0.461 6.461 15 N -0.365 5.365 16 C -0.032 4.032 17 C 0.011 3.989 18 H 0.066 0.934 19 C -0.191 4.191 20 O -0.299 6.299 21 C 0.027 3.973 22 H 0.145 0.855 23 C -0.232 4.232 24 C -0.036 4.036 25 H 0.038 0.962 26 H 0.080 0.920 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.119 0.881 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.092 0.908 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.066 0.934 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.331 0.438 11.334 11.580 hybrid contribution -0.624 0.866 -1.557 1.888 sum 1.707 1.304 9.777 10.010 Atomic orbital electron populations 1.22155 0.99230 0.99206 1.00169 1.21027 0.92365 0.85268 0.99858 1.44025 1.74417 1.10955 1.02250 1.19394 1.42403 0.89286 0.87041 0.91359 1.25450 1.01235 0.97278 0.99084 1.69819 1.55953 1.05628 1.24152 0.85431 0.76322 0.78225 0.81322 1.23507 1.21894 1.19578 1.20715 0.94285 0.95070 0.85919 1.22078 0.90870 0.77192 0.77119 1.90455 1.33684 1.63733 1.58201 1.48279 1.10909 1.54197 1.23131 1.22450 0.86698 0.97434 0.96572 1.22619 0.87031 0.92517 0.96773 0.93377 1.21705 0.94884 1.03335 0.99172 1.87910 1.19125 1.82135 1.40759 1.22510 0.88823 0.94195 0.91746 0.85455 1.22265 1.02364 1.00496 0.98056 1.22052 0.89769 0.93344 0.98408 0.96185 0.92050 0.94740 0.93164 0.92033 0.94660 0.93133 0.88075 0.90038 0.89090 0.90755 0.89491 0.91510 0.93385 0.91446 0.92598 0.91767 0.90777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.28 9.66 71.98 0.70 -5.58 16 2 C 0.14 5.86 6.44 86.38 0.56 6.42 16 3 N -0.60 -29.51 2.07 -706.34 -1.46 -30.97 16 4 C -0.25 -13.70 9.70 84.03 0.81 -12.89 16 5 H 0.07 3.68 7.84 -2.91 -0.02 3.66 16 6 C -0.04 -1.93 5.41 84.86 0.46 -1.48 16 7 N -0.91 -49.30 8.21 21.65 0.18 -49.13 16 8 Si 0.96 46.05 29.56 68.60 2.03 48.07 16 9 H -0.31 -15.54 7.11 99.48 0.71 -14.83 16 10 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 11 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 12 C 0.17 7.75 3.84 85.63 0.33 8.08 16 13 C 0.54 25.19 5.67 87.66 0.50 25.69 16 14 O -0.58 -32.37 13.36 -3.05 -0.04 -32.41 16 15 N -0.63 -24.05 2.53 -816.43 -2.07 -26.11 16 16 C 0.09 2.78 5.85 86.50 0.51 3.28 16 17 C 0.07 1.96 3.03 30.84 0.09 2.06 16 18 H 0.05 1.62 6.25 -2.39 -0.01 1.61 16 19 C -0.13 -2.73 9.57 71.98 0.69 -2.04 16 20 O -0.38 -11.30 10.22 -148.98 -1.52 -12.82 16 21 C 0.09 2.60 3.93 30.71 0.12 2.72 16 22 H 0.13 3.15 8.14 -2.39 -0.02 3.13 16 23 C -0.17 -5.99 8.81 71.98 0.63 -5.35 16 24 C 0.09 3.07 6.02 86.37 0.52 3.59 16 25 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.03 1.60 6.38 -2.39 -0.02 1.58 16 28 H 0.05 1.99 8.08 -2.38 -0.02 1.97 16 29 H 0.06 2.22 7.84 -2.39 -0.02 2.21 16 30 H 0.24 13.30 8.06 -92.70 -0.75 12.55 16 31 H 0.05 1.99 7.72 -2.38 -0.02 1.97 16 32 H 0.10 4.97 5.76 -2.39 -0.01 4.96 16 33 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.09 2.77 6.05 -2.39 -0.01 2.75 16 35 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 37 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.06 2.28 5.85 -2.39 -0.01 2.27 16 41 H 0.06 2.61 7.08 -2.39 -0.02 2.59 16 42 H 0.07 2.27 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -66.25 323.53 4.04 -62.21 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 1.01 Total: 16.67 kcal Atomic # 6 Polarization: 18.58 SS G_CDS: 5.91 Total: 24.50 kcal Atomic # 7 Polarization: -102.86 SS G_CDS: -3.35 Total: -106.21 kcal Atomic # 8 Polarization: -43.67 SS G_CDS: -1.56 Total: -45.24 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.07 kcal Total: -66.25 4.04 -62.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226668859.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.730 kcal (2) G-P(sol) polarization free energy of solvation -66.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds